Wall clock time and date at job start Sun Mar 29 2020 21:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 120.00133 * 2 1 4 4 H 1.48496 * 109.47181 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47176 * 300.00055 * 3 2 1 6 6 H 1.48499 * 109.47366 * 59.99931 * 3 2 1 7 7 C 1.38813 * 119.99781 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99858 * 165.63688 * 7 2 1 9 9 N 1.36942 * 119.99660 * 345.63960 * 7 2 1 10 10 C 1.46952 * 120.65753 * 329.32819 * 9 7 2 11 11 C 1.53188 * 108.89124 * 233.53931 * 10 9 7 12 12 C 1.53041 * 109.31267 * 305.44656 * 11 10 9 13 13 C 1.53035 * 109.54155 * 61.35804 * 12 11 10 14 14 C 1.46920 * 120.62538 * 149.51286 * 9 7 2 15 15 H 1.09005 * 109.58666 * 246.31524 * 14 9 7 16 16 C 1.53000 * 109.59025 * 6.60035 * 14 9 7 17 17 H 1.09002 * 110.35142 * 59.02529 * 16 14 9 18 18 C 1.54954 * 110.30978 * 181.16785 * 16 14 9 19 19 C 1.55310 * 100.94064 * 155.36098 * 18 16 14 20 20 C 1.54386 * 102.24896 * 325.86747 * 19 18 16 21 21 O 1.43233 * 107.59194 * 21.35758 * 20 19 18 22 22 H 0.97006 * 119.99486 * 0.02562 * 1 2 3 23 23 H 1.08997 * 109.47253 * 113.75023 * 10 9 7 24 24 H 1.09004 * 109.71166 * 353.46680 * 10 9 7 25 25 H 1.08995 * 109.50381 * 185.48916 * 11 10 9 26 26 H 1.09011 * 109.52432 * 65.40790 * 11 10 9 27 27 H 1.09006 * 109.45616 * 301.33873 * 12 11 10 28 28 H 1.09004 * 109.45110 * 181.38003 * 12 11 10 29 29 H 1.08997 * 109.50069 * 178.68490 * 13 12 11 30 30 H 1.09000 * 109.49376 * 58.59227 * 13 12 11 31 31 H 1.09004 * 111.12132 * 37.44415 * 18 16 14 32 32 H 1.09000 * 111.15915 * 273.29526 * 18 16 14 33 33 H 1.08997 * 110.84371 * 207.67715 * 19 18 16 34 34 H 1.08997 * 111.01749 * 84.13549 * 19 18 16 35 35 H 1.09001 * 109.82925 * 261.84288 * 20 19 18 36 36 H 1.09000 * 109.82734 * 140.87501 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0649 -1.2167 -0.2326 9 7 1.3575 -2.3697 0.2931 10 6 0.2120 -2.3767 1.2136 11 6 0.4684 -3.4083 2.3166 12 6 0.7708 -4.7663 1.6791 13 6 2.0305 -4.6579 0.8168 14 6 1.7917 -3.6403 -0.3032 15 1 1.0182 -4.0117 -0.9755 16 6 3.0893 -3.4235 -1.0843 17 1 3.8687 -3.0402 -0.4257 18 6 3.5470 -4.7482 -1.7452 19 6 4.3991 -4.2092 -2.9265 20 6 3.6473 -2.9164 -3.3096 21 8 2.8685 -2.5165 -2.1760 22 1 -0.4850 0.8401 -0.0004 23 1 -0.6921 -2.6437 0.6665 24 1 0.0916 -1.3887 1.6582 25 1 -0.4153 -3.4920 2.9491 26 1 1.3193 -3.0923 2.9203 27 1 -0.0705 -5.0705 1.0563 28 1 0.9295 -5.5077 2.4623 29 1 2.2585 -5.6309 0.3818 30 1 2.8667 -4.3299 1.4342 31 1 2.6937 -5.3224 -2.1062 32 1 4.1545 -5.3401 -1.0605 33 1 4.4030 -4.9161 -3.7562 34 1 5.4163 -3.9857 -2.6048 35 1 2.9922 -3.1076 -4.1595 36 1 4.3627 -2.1335 -3.5615 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001560224347.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:28 Heat of formation + Delta-G solvation = -52.692631 kcal Electronic energy + Delta-G solvation = -16844.974829 eV Core-core repulsion = 14328.432177 eV Total energy + Delta-G solvation = -2516.542652 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.59740 -38.59826 -34.90832 -33.23498 -32.69931 -31.59945 -28.79568 -26.98717 -24.28461 -23.84813 -22.21606 -21.56310 -20.77230 -18.43943 -17.64072 -16.72689 -16.49658 -15.79999 -15.64546 -15.30651 -14.77611 -14.44988 -14.11763 -14.00479 -13.85171 -13.27001 -12.84510 -12.65180 -12.42347 -12.40356 -12.16771 -12.01657 -11.95764 -11.74704 -11.60208 -11.50778 -11.05820 -11.00774 -10.44813 -10.16275 -8.51187 -7.75658 -5.20563 1.43751 1.45037 1.55241 2.56576 3.10122 3.41422 3.61497 3.71168 4.06901 4.09128 4.17538 4.26407 4.33423 4.37104 4.48903 4.63430 4.73231 4.82537 4.90014 4.91063 4.97879 5.00171 5.06286 5.17178 5.20478 5.29765 5.31452 5.42831 5.50599 5.63018 5.79825 5.83414 6.45776 6.54899 7.27571 7.96840 8.48583 9.32212 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.019882 B = 0.014130 C = 0.008950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.964720 B = 1981.071050 C = 3127.593555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.061 4.061 3 Si 0.957 3.043 4 H -0.268 1.268 5 H -0.299 1.299 6 H -0.291 1.291 7 C -0.211 4.211 8 H 0.066 0.934 9 N -0.603 5.603 10 C 0.176 3.824 11 C -0.133 4.133 12 C -0.105 4.105 13 C -0.118 4.118 14 C 0.166 3.834 15 H 0.006 0.994 16 C 0.090 3.910 17 H 0.051 0.949 18 C -0.140 4.140 19 C -0.141 4.141 20 C 0.029 3.971 21 O -0.390 6.390 22 H 0.242 0.758 23 H -0.013 1.013 24 H 0.048 0.952 25 H 0.066 0.934 26 H 0.051 0.949 27 H 0.050 0.950 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.059 0.941 31 H 0.079 0.921 32 H 0.105 0.895 33 H 0.103 0.897 34 H 0.084 0.916 35 H 0.062 0.938 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.767 -12.256 -1.091 14.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.255 4.255 3 Si 0.787 3.213 4 H -0.193 1.193 5 H -0.227 1.227 6 H -0.218 1.218 7 C -0.342 4.342 8 H 0.084 0.916 9 N -0.327 5.327 10 C 0.050 3.950 11 C -0.172 4.172 12 C -0.143 4.143 13 C -0.157 4.157 14 C 0.060 3.940 15 H 0.024 0.976 16 C 0.033 3.967 17 H 0.069 0.931 18 C -0.178 4.178 19 C -0.178 4.178 20 C -0.048 4.048 21 O -0.310 6.310 22 H 0.052 0.948 23 H 0.005 0.995 24 H 0.066 0.934 25 H 0.084 0.916 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.100 0.900 29 H 0.106 0.894 30 H 0.077 0.923 31 H 0.098 0.902 32 H 0.124 0.876 33 H 0.121 0.879 34 H 0.103 0.897 35 H 0.080 0.920 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.560 -11.948 -1.097 14.181 hybrid contribution -0.063 1.414 -0.277 1.442 sum 7.497 -10.534 -1.374 13.002 Atomic orbital electron populations 1.70198 1.06512 1.24866 1.57846 1.25749 0.95969 1.01165 1.02585 0.85329 0.78699 0.80877 0.76393 1.19285 1.22652 1.21846 1.19337 0.91812 0.84863 1.38200 0.91604 1.44369 1.35506 1.03074 1.49716 1.20576 0.87598 0.97295 0.89482 1.22033 1.00726 0.96497 0.97963 1.21382 0.97444 0.96430 0.99022 1.21908 0.98184 0.98563 0.97042 1.20905 0.93163 0.87317 0.92599 0.97629 1.22962 0.96045 0.89021 0.88670 0.93132 1.23296 1.00455 0.96232 0.97783 1.23071 0.99411 0.96226 0.99135 1.23331 0.94436 0.97115 0.89880 1.88804 1.67543 1.52161 1.22492 0.94841 0.99484 0.93351 0.91586 0.92999 0.93109 0.89959 0.89423 0.92272 0.90241 0.87642 0.87874 0.89717 0.91963 0.92130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.93 11.22 21.65 0.24 -59.68 16 2 C -0.06 -3.68 4.96 84.86 0.42 -3.26 16 3 Si 0.96 48.43 29.58 68.60 2.03 50.46 16 4 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 5 H -0.30 -15.29 7.11 99.48 0.71 -14.58 16 6 H -0.29 -14.51 7.11 99.48 0.71 -13.80 16 7 C -0.21 -12.21 7.80 84.03 0.66 -11.55 16 8 H 0.07 3.80 5.94 -2.91 -0.02 3.78 16 9 N -0.60 -31.73 2.99 -675.17 -2.02 -33.75 16 10 C 0.18 9.01 5.26 86.36 0.45 9.46 16 11 C -0.13 -5.13 6.08 30.67 0.19 -4.95 16 12 C -0.11 -3.36 5.88 30.62 0.18 -3.18 16 13 C -0.12 -3.83 5.06 30.67 0.16 -3.68 16 14 C 0.17 7.06 2.72 44.98 0.12 7.18 16 15 H 0.01 0.28 8.14 -2.38 -0.02 0.26 16 16 C 0.09 3.48 2.15 31.26 0.07 3.54 16 17 H 0.05 2.06 7.40 -2.39 -0.02 2.04 16 18 C -0.14 -3.64 5.58 32.06 0.18 -3.46 16 19 C -0.14 -3.27 7.02 31.86 0.22 -3.05 16 20 C 0.03 0.94 7.79 72.45 0.56 1.50 16 21 O -0.39 -17.54 9.17 -148.98 -1.37 -18.91 16 22 H 0.24 14.94 8.31 -92.70 -0.77 14.16 16 23 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 24 H 0.05 2.80 6.18 -2.38 -0.01 2.78 16 25 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 26 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 27 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 28 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.09 2.21 7.53 -2.39 -0.02 2.19 16 30 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.08 2.01 8.06 -2.39 -0.02 1.99 16 32 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -71.34 275.73 3.13 -68.21 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: 1.03 Total: 5.10 kcal Atomic # 6 Polarization: -14.63 SS G_CDS: 3.21 Total: -11.42 kcal Atomic # 7 Polarization: -91.66 SS G_CDS: -1.78 Total: -93.44 kcal Atomic # 8 Polarization: -17.54 SS G_CDS: -1.37 Total: -18.91 kcal Atomic # 14 Polarization: 48.43 SS G_CDS: 2.03 Total: 50.46 kcal Total: -71.34 3.13 -68.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001560224347.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.518 kcal (2) G-P(sol) polarization free energy of solvation -71.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds