Wall clock time and date at job start Sun Mar 29 2020 21:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86798 * 119.99690 * 2 1 4 4 H 1.48497 * 109.47588 * 269.99493 * 3 2 1 5 5 H 1.48500 * 109.47345 * 30.00228 * 3 2 1 6 6 H 1.48504 * 109.46791 * 150.00071 * 3 2 1 7 7 C 1.38806 * 120.00107 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00032 * 169.38209 * 7 2 1 9 9 N 1.36941 * 119.99662 * 349.09719 * 7 2 1 10 10 C 1.46921 * 120.63481 * 326.19556 * 9 7 2 11 11 C 1.52758 * 109.00964 * 233.58051 * 10 9 7 12 12 C 1.53040 * 109.38512 * 305.58875 * 11 10 9 13 13 C 1.53045 * 109.53543 * 61.23887 * 12 11 10 14 14 C 1.46935 * 120.62553 * 146.47348 * 9 7 2 15 15 H 1.09002 * 109.58615 * 246.29886 * 14 9 7 16 16 C 1.52994 * 109.58475 * 6.58506 * 14 9 7 17 17 H 1.08997 * 109.82500 * 52.67582 * 16 14 9 18 18 C 1.54383 * 109.83275 * 291.69254 * 16 14 9 19 19 C 1.55308 * 102.25361 * 219.13411 * 18 16 14 20 20 C 1.54950 * 100.94175 * 34.13202 * 19 18 16 21 21 O 1.43247 * 109.82561 * 173.56238 * 16 14 9 22 22 H 0.97001 * 119.99923 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.58554 * 353.42137 * 10 9 7 24 24 H 1.08999 * 109.58492 * 113.84070 * 10 9 7 25 25 H 1.09004 * 109.56270 * 185.55007 * 11 10 9 26 26 H 1.09002 * 109.35530 * 65.50220 * 11 10 9 27 27 H 1.08994 * 109.45953 * 301.21810 * 12 11 10 28 28 H 1.09004 * 109.44558 * 181.25056 * 12 11 10 29 29 H 1.08997 * 109.49354 * 178.67893 * 13 12 11 30 30 H 1.08998 * 109.49377 * 58.58569 * 13 12 11 31 31 H 1.09006 * 110.84460 * 337.32076 * 18 16 14 32 32 H 1.08997 * 110.84484 * 100.94027 * 18 16 14 33 33 H 1.08998 * 111.12598 * 276.21516 * 19 18 16 34 34 H 1.08996 * 111.12230 * 152.04971 * 19 18 16 35 35 H 1.08997 * 110.31056 * 204.63946 * 20 19 18 36 36 H 1.08998 * 110.39130 * 82.51334 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0764 -1.2100 -0.1729 9 7 1.3441 -2.3774 0.2233 10 6 0.1936 -2.4238 1.1358 11 6 0.4299 -3.5141 2.1794 12 6 0.7254 -4.8387 1.4721 13 6 1.9922 -4.6953 0.6254 14 6 1.7701 -3.6173 -0.4401 15 1 0.9977 -3.9429 -1.1369 16 6 3.0751 -3.3704 -1.1996 17 1 3.8133 -2.9268 -0.5316 18 6 2.8151 -2.4288 -2.3952 19 6 3.7175 -3.0424 -3.5003 20 6 3.6180 -4.5503 -3.1577 21 8 3.5741 -4.6069 -1.7230 22 1 -0.4850 0.8401 -0.0004 23 1 0.0834 -1.4606 1.6341 24 1 -0.7110 -2.6514 0.5720 25 1 -0.4591 -3.6236 2.8005 26 1 1.2792 -3.2379 2.8044 27 1 -0.1138 -5.1016 0.8283 28 1 0.8722 -5.6221 2.2156 29 1 2.2152 -5.6457 0.1406 30 1 2.8267 -4.4081 1.2652 31 1 1.7663 -2.4575 -2.6906 32 1 3.1258 -1.4105 -2.1616 33 1 4.7439 -2.6865 -3.4119 34 1 3.3168 -2.8379 -4.4930 35 1 4.4935 -5.0816 -3.5306 36 1 2.7086 -4.9767 -3.5811 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001560224348.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:30 Heat of formation + Delta-G solvation = -37.101885 kcal Electronic energy + Delta-G solvation = -16873.589197 eV Core-core repulsion = 14357.722610 eV Total energy + Delta-G solvation = -2515.866587 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.20070 -36.96196 -33.13626 -31.62332 -31.17328 -29.75217 -27.31214 -25.26341 -22.64274 -22.02201 -20.90698 -19.94537 -19.00908 -16.53076 -16.42849 -15.27170 -14.71276 -14.16974 -13.83655 -13.45294 -13.17888 -12.77677 -12.48665 -12.29855 -12.17757 -12.06364 -11.16925 -10.99700 -10.84122 -10.75545 -10.53040 -10.29769 -10.20424 -10.13742 -10.10125 -9.86435 -9.50049 -9.25295 -8.69655 -8.42547 -6.51657 -5.76968 -3.25948 3.34430 3.42696 3.43822 4.31800 4.51208 5.13804 5.30692 5.33678 5.45208 5.58354 5.66076 5.79836 5.82111 5.94596 5.97940 6.07128 6.15251 6.22940 6.39534 6.43204 6.54305 6.58594 6.74590 6.82897 6.85653 6.88765 6.96250 6.99913 7.22246 7.46411 7.62387 7.73595 7.82163 8.50179 9.23551 9.85905 10.46953 11.30662 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.020485 B = 0.013763 C = 0.008940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.524456 B = 2033.879446 C = 3131.201771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.009 3.991 3 Si 0.895 3.105 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.251 4.251 8 H 0.065 0.935 9 N -0.585 5.585 10 C 0.177 3.823 11 C -0.144 4.144 12 C -0.110 4.110 13 C -0.123 4.123 14 C 0.169 3.831 15 H 0.025 0.975 16 C 0.091 3.909 17 H 0.080 0.920 18 C -0.125 4.125 19 C -0.165 4.165 20 C 0.053 3.947 21 O -0.386 6.386 22 H 0.253 0.747 23 H 0.082 0.918 24 H 0.016 0.984 25 H 0.045 0.955 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.041 0.959 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.063 -6.572 -2.814 8.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.190 4.190 3 Si 0.724 3.276 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.381 4.381 8 H 0.082 0.918 9 N -0.310 5.310 10 C 0.051 3.949 11 C -0.183 4.183 12 C -0.147 4.147 13 C -0.162 4.162 14 C 0.063 3.937 15 H 0.042 0.958 16 C 0.034 3.966 17 H 0.098 0.902 18 C -0.162 4.162 19 C -0.203 4.203 20 C -0.024 4.024 21 O -0.305 6.305 22 H 0.063 0.937 23 H 0.100 0.900 24 H 0.034 0.966 25 H 0.064 0.936 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.109 0.891 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.010 -6.594 -2.697 8.175 hybrid contribution 0.247 1.112 -0.135 1.147 sum 4.257 -5.482 -2.831 7.496 Atomic orbital electron populations 1.69989 1.05240 1.25354 1.53814 1.25167 0.95272 0.98136 1.00468 0.86424 0.79296 0.84099 0.77756 1.21322 1.21583 1.20416 1.19065 0.90785 0.83830 1.44424 0.91789 1.43919 1.35122 1.03457 1.48479 1.20618 0.88481 0.96587 0.89174 1.22131 0.99796 0.97005 0.99379 1.21405 0.97963 0.97133 0.98221 1.21903 0.97172 0.98930 0.98219 1.20716 0.92962 0.88054 0.92017 0.95777 1.22765 0.95943 0.82664 0.95247 0.90215 1.23040 1.00094 1.00585 0.92493 1.23364 1.00936 0.95839 1.00139 1.23248 1.00301 0.96210 0.82653 1.88360 1.85914 1.37455 1.18807 0.93674 0.90015 0.96558 0.93634 0.92924 0.93109 0.93981 0.92745 0.92716 0.90610 0.89074 0.91160 0.90830 0.90858 0.92991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.53 11.26 55.49 0.62 -24.91 16 2 C 0.01 0.23 5.02 -17.43 -0.09 0.15 16 3 Si 0.89 21.13 29.57 -169.99 -5.03 16.10 16 4 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.25 -6.54 7.00 -15.06 -0.11 -6.64 16 8 H 0.06 1.64 5.45 -52.49 -0.29 1.35 16 9 N -0.58 -14.43 2.98 -165.04 -0.49 -14.92 16 10 C 0.18 4.27 5.21 -3.94 -0.02 4.25 16 11 C -0.14 -2.89 6.06 -26.83 -0.16 -3.05 16 12 C -0.11 -2.02 5.89 -26.69 -0.16 -2.18 16 13 C -0.12 -2.41 5.07 -26.61 -0.13 -2.54 16 14 C 0.17 3.68 2.60 -67.60 -0.18 3.51 16 15 H 0.02 0.57 8.01 -51.93 -0.42 0.15 16 16 C 0.09 1.83 2.57 -26.01 -0.07 1.76 16 17 H 0.08 1.71 6.97 -51.93 -0.36 1.34 16 18 C -0.12 -2.39 5.20 -24.78 -0.13 -2.52 16 19 C -0.17 -2.48 7.16 -24.48 -0.18 -2.66 16 20 C 0.05 0.79 7.78 38.19 0.30 1.09 16 21 O -0.39 -7.19 10.26 -35.23 -0.36 -7.56 16 22 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 23 H 0.08 2.18 6.31 -51.93 -0.33 1.85 16 24 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.05 1.01 7.77 -51.93 -0.40 0.60 16 30 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.08 1.58 7.76 -51.93 -0.40 1.18 16 32 H 0.09 1.87 6.65 -51.93 -0.35 1.52 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 273.57 15.07 4.12 4.12 Total: -1.00 -27.91 273.57 -7.95 -35.87 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -5.91 Total: 0.13 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: -0.92 Total: -8.84 kcal Atomic # 7 Polarization: -39.96 SS G_CDS: 0.13 Total: -39.83 kcal Atomic # 8 Polarization: -7.19 SS G_CDS: -0.36 Total: -7.56 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.03 Total: 16.10 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -27.91 -7.95 -35.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001560224348.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.236 kcal (2) G-P(sol) polarization free energy of solvation -27.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds