Wall clock time and date at job start Sun Mar 29 2020 21:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00234 * 2 1 4 4 H 1.48501 * 109.46901 * 240.00114 * 3 2 1 5 5 H 1.48500 * 109.47138 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47341 * 120.00293 * 3 2 1 7 7 C 1.38817 * 119.99820 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00005 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99808 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99779 * 180.02562 * 9 7 2 11 11 H 1.08992 * 109.54268 * 35.17344 * 10 9 7 12 12 C 1.53251 * 109.54173 * 274.99575 * 10 9 7 13 13 C 1.53096 * 109.11371 * 296.42020 * 12 10 9 14 14 O 1.42897 * 109.51629 * 302.06215 * 13 12 10 15 15 C 1.42981 * 114.06049 * 61.45290 * 14 13 12 16 16 C 1.52719 * 109.42790 * 299.53285 * 15 14 13 17 17 C 1.53930 * 109.88017 * 177.73782 * 16 15 14 18 18 C 1.54966 * 104.12657 * 96.03208 * 17 16 15 19 19 C 1.54921 * 102.79350 * 37.64764 * 18 17 16 20 20 C 1.53572 * 110.03761 * 295.22466 * 16 15 14 21 21 H 0.97004 * 120.00051 * 359.97438 * 1 2 3 22 22 H 0.96999 * 120.00224 * 359.97438 * 9 7 2 23 23 H 1.08995 * 109.53214 * 176.52964 * 12 10 9 24 24 H 1.09001 * 109.59317 * 56.34417 * 12 10 9 25 25 H 1.08991 * 109.46441 * 62.07863 * 13 12 10 26 26 H 1.08995 * 109.46007 * 182.05157 * 13 12 10 27 27 H 1.09001 * 109.48002 * 179.54789 * 15 14 13 28 28 H 1.08995 * 109.48779 * 59.52260 * 15 14 13 29 29 H 1.09004 * 110.49770 * 214.68634 * 17 16 15 30 30 H 1.08999 * 110.50619 * 337.36997 * 17 16 15 31 31 H 1.09007 * 110.74635 * 279.32380 * 18 17 16 32 32 H 1.08999 * 110.75344 * 155.97835 * 18 17 16 33 33 H 1.09003 * 110.48785 * 203.55478 * 19 18 17 34 34 H 1.08998 * 110.59510 * 80.97150 * 19 18 17 35 35 H 1.09009 * 110.05707 * 359.82522 * 20 16 15 36 36 H 1.09000 * 110.05793 * 121.26624 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3254 -2.3881 0.0005 10 6 2.0579 -3.6569 0.0017 11 1 2.9669 -3.5526 0.5940 12 6 2.4243 -4.0386 -1.4366 13 6 1.1396 -4.2741 -2.2354 14 8 0.3677 -5.2993 -1.6067 15 6 -0.0490 -4.9821 -0.2763 16 6 1.1806 -4.7552 0.6007 17 6 0.7436 -4.3574 2.0220 18 6 0.7699 -5.6900 2.8126 19 6 2.0120 -6.4099 2.2303 20 6 1.9839 -6.0578 0.7278 21 1 -0.4850 0.8401 0.0004 22 1 0.3554 -2.3881 0.0005 23 1 3.0220 -4.9500 -1.4308 24 1 2.9954 -3.2312 -1.8949 25 1 0.5593 -3.3522 -2.2702 26 1 1.3940 -4.5815 -3.2498 27 1 -0.6359 -5.8072 0.1272 28 1 -0.6565 -4.0773 -0.2915 29 1 1.4471 -3.6445 2.4522 30 1 -0.2636 -3.9410 2.0093 31 1 -0.1349 -6.2683 2.6249 32 1 0.8960 -5.5039 3.8791 33 1 1.9293 -7.4876 2.3713 34 1 2.9247 -6.0345 2.6931 35 1 1.4956 -6.8545 0.1663 36 1 2.9987 -5.9087 0.3589 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001620677262.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:47 Heat of formation + Delta-G solvation = -52.784109 kcal Electronic energy + Delta-G solvation = -16825.611798 eV Core-core repulsion = 14309.065179 eV Total energy + Delta-G solvation = -2516.546619 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.92700 -36.40578 -34.52446 -31.91700 -30.10161 -29.10112 -28.17771 -24.50842 -24.34532 -23.15395 -20.76132 -20.09347 -17.78334 -17.18785 -15.75336 -15.60761 -15.18160 -14.66283 -14.34290 -13.88513 -13.28280 -13.05266 -12.83076 -12.72331 -11.81989 -11.51357 -11.36647 -10.92529 -10.84851 -10.75775 -10.68943 -10.61828 -10.46147 -10.29702 -10.16072 -9.88328 -9.80566 -9.38954 -8.93958 -8.66572 -6.94877 -5.77090 -3.05243 3.42892 3.47836 3.48397 4.41354 4.58588 4.95701 5.02185 5.06095 5.49595 5.53513 5.66892 5.69558 5.72513 5.79906 5.88001 5.92703 5.97419 6.05679 6.14131 6.17537 6.19743 6.33339 6.38940 6.40607 6.56712 6.62052 6.69024 6.76974 6.80946 6.96103 7.01104 7.69511 7.77191 8.41619 9.52780 10.10392 10.45631 11.45461 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.030832 B = 0.009269 C = 0.008262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.928011 B = 3019.986977 C = 3388.133263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.905 3.095 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.287 1.287 7 C -0.237 4.237 8 H 0.068 0.932 9 N -0.720 5.720 10 C 0.187 3.813 11 H 0.049 0.951 12 C -0.172 4.172 13 C 0.067 3.933 14 O -0.391 6.391 15 C 0.078 3.922 16 C -0.099 4.099 17 C -0.101 4.101 18 C -0.127 4.127 19 C -0.123 4.123 20 C -0.106 4.106 21 H 0.255 0.745 22 H 0.383 0.617 23 H 0.053 0.947 24 H 0.069 0.931 25 H 0.060 0.940 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.054 0.946 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.091 -11.562 1.715 11.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.209 4.209 3 Si 0.736 3.264 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.214 1.214 7 C -0.368 4.368 8 H 0.086 0.914 9 N -0.362 5.362 10 C 0.077 3.923 11 H 0.067 0.933 12 C -0.212 4.212 13 C -0.009 4.009 14 O -0.310 6.310 15 C 0.001 3.999 16 C -0.100 4.100 17 C -0.139 4.139 18 C -0.164 4.164 19 C -0.161 4.161 20 C -0.144 4.144 21 H 0.065 0.935 22 H 0.217 0.783 23 H 0.071 0.929 24 H 0.088 0.912 25 H 0.079 0.921 26 H 0.094 0.906 27 H 0.099 0.901 28 H 0.072 0.928 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.156 -11.567 1.628 11.878 hybrid contribution 0.305 1.320 0.049 1.356 sum 2.461 -10.247 1.677 10.670 Atomic orbital electron populations 1.69642 1.05052 1.25708 1.57750 1.24707 0.95469 0.97550 1.03125 0.86301 0.78528 0.83760 0.77784 1.21383 1.21758 1.21362 1.19178 0.90909 0.84129 1.42594 0.91363 1.42444 1.05692 0.99573 1.88460 1.20252 0.93939 0.85654 0.92435 0.93304 1.22811 0.97710 1.00386 1.00341 1.22431 0.92263 0.91293 0.94933 1.87802 1.71836 1.43346 1.28043 1.22526 0.94813 1.00355 0.82221 1.21758 0.96645 0.95580 0.95996 1.22226 1.01965 0.96229 0.93476 1.22555 0.97716 0.97080 0.99090 1.22377 0.98297 0.99248 0.96175 1.22119 1.00095 0.96614 0.95609 0.93506 0.78257 0.92883 0.91230 0.92147 0.90604 0.90052 0.92822 0.90697 0.91713 0.92079 0.92165 0.92449 0.92028 0.91690 0.91913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.72 13.06 55.49 0.72 -27.00 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 22.26 29.55 -169.99 -5.02 17.24 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.24 -6.42 9.93 -15.06 -0.15 -6.57 16 8 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 9 N -0.72 -17.44 4.01 -53.40 -0.21 -17.66 16 10 C 0.19 3.72 1.72 -67.90 -0.12 3.61 16 11 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 12 C -0.17 -3.17 5.56 -26.55 -0.15 -3.32 16 13 C 0.07 1.23 6.68 37.21 0.25 1.48 16 14 O -0.39 -7.12 10.44 -35.23 -0.37 -7.49 16 15 C 0.08 1.34 4.98 37.01 0.18 1.53 16 16 C -0.10 -1.67 0.38 -153.97 -0.06 -1.73 16 17 C -0.10 -1.69 5.43 -25.21 -0.14 -1.82 16 18 C -0.13 -1.70 6.91 -24.68 -0.17 -1.87 16 19 C -0.12 -1.59 6.84 -25.01 -0.17 -1.76 16 20 C -0.11 -1.55 5.43 -25.73 -0.14 -1.69 16 21 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 22 H 0.38 9.90 6.38 -40.82 -0.26 9.64 16 23 H 0.05 0.88 6.88 -51.93 -0.36 0.52 16 24 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 25 H 0.06 1.26 7.75 -51.93 -0.40 0.86 16 26 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 27 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 28 H 0.05 1.03 6.84 -51.93 -0.36 0.67 16 29 H 0.07 1.40 7.84 -51.93 -0.41 0.99 16 30 H 0.06 1.13 7.81 -51.93 -0.41 0.72 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.06 0.94 7.56 -51.92 -0.39 0.54 16 36 H 0.06 0.92 6.67 -51.93 -0.35 0.57 16 LS Contribution 276.71 15.07 4.17 4.17 Total: -1.00 -28.63 276.71 -7.32 -35.95 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -5.85 Total: 7.38 kcal Atomic # 6 Polarization: -11.84 SS G_CDS: -0.75 Total: -12.59 kcal Atomic # 7 Polarization: -45.16 SS G_CDS: 0.51 Total: -44.65 kcal Atomic # 8 Polarization: -7.12 SS G_CDS: -0.37 Total: -7.49 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -28.63 -7.32 -35.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001620677262.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.836 kcal (2) G-P(sol) polarization free energy of solvation -28.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds