Wall clock time and date at job start Sun Mar 29 2020 21:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09011 * 110.64352 * 2 1 4 4 C 1.54935 * 110.72462 * 236.65534 * 2 1 3 5 5 N 1.48537 * 103.22505 * 204.22418 * 4 2 1 6 6 C 1.46904 * 110.99690 * 159.71870 * 5 4 2 7 7 C 1.52997 * 109.47265 * 52.60645 * 6 5 4 8 8 C 1.52999 * 109.47415 * 179.97438 * 7 6 5 9 9 C 1.50695 * 109.47057 * 180.02562 * 8 7 6 10 10 H 1.07999 * 120.00538 * 359.97438 * 9 8 7 11 11 C 1.37881 * 119.99661 * 179.97438 * 9 8 7 12 12 N 1.31520 * 120.00186 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00030 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.47297 * 89.99863 * 13 11 9 15 15 H 1.48503 * 109.47261 * 330.00044 * 13 11 9 16 16 H 1.48500 * 109.47454 * 210.00037 * 13 11 9 17 17 C 1.47898 * 105.81911 * 39.20850 * 5 4 2 18 18 C 1.53000 * 109.92048 * 94.01844 * 17 5 4 19 19 C 1.52998 * 109.91942 * 215.31270 * 17 5 4 20 20 C 1.53995 * 107.05810 * 334.66869 * 17 5 4 21 21 H 1.09002 * 109.47054 * 296.85046 * 1 2 3 22 22 H 1.09003 * 109.46969 * 56.84809 * 1 2 3 23 23 H 1.08996 * 109.47043 * 176.84542 * 1 2 3 24 24 H 1.08996 * 110.67040 * 85.79286 * 4 2 1 25 25 H 1.08997 * 110.66657 * 322.65896 * 4 2 1 26 26 H 1.09002 * 109.47117 * 292.60339 * 6 5 4 27 27 H 1.08998 * 109.47117 * 172.60457 * 6 5 4 28 28 H 1.09002 * 109.47302 * 59.99808 * 7 6 5 29 29 H 1.08998 * 109.46899 * 299.99946 * 7 6 5 30 30 H 1.09002 * 109.46997 * 59.99676 * 8 7 6 31 31 H 1.09000 * 109.46625 * 300.00101 * 8 7 6 32 32 H 0.97001 * 119.99697 * 359.97438 * 12 11 9 33 33 H 1.08999 * 109.47067 * 59.99825 * 18 17 5 34 34 H 1.08999 * 109.47379 * 180.02562 * 18 17 5 35 35 H 1.09003 * 109.47377 * 300.00532 * 18 17 5 36 36 H 1.09003 * 109.47115 * 59.99757 * 19 17 5 37 37 H 1.08997 * 109.47479 * 179.97438 * 19 17 5 38 38 H 1.08999 * 109.47212 * 300.00012 * 19 17 5 39 39 H 1.09002 * 110.31022 * 120.14461 * 20 17 5 40 40 H 1.09003 * 110.30790 * 242.31092 * 20 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0201 0.0000 4 6 2.0783 -0.7965 -1.2105 5 7 3.4318 -1.2104 -0.7601 6 6 3.9212 -2.3523 -1.5441 7 6 3.8199 -2.0277 -3.0358 8 6 4.3302 -3.2168 -3.8523 9 6 4.2310 -2.8968 -5.3215 10 1 3.8425 -1.9411 -5.6411 11 6 4.6363 -3.8242 -6.2579 12 7 5.1100 -4.9878 -5.8688 13 14 4.5128 -3.4279 -8.0792 14 1 5.7731 -2.7868 -8.5329 15 1 3.3756 -2.5007 -8.3080 16 1 4.2913 -4.6810 -8.8446 17 6 3.2893 -1.5696 0.6675 18 6 3.0462 -3.0740 0.8047 19 6 4.5517 -1.1700 1.4341 20 6 2.0770 -0.7907 1.2105 21 1 -0.3633 0.4642 0.9169 22 1 -0.3633 0.5620 -0.8604 23 1 -0.3633 -1.0261 -0.0566 24 1 2.1444 -0.1593 -2.0923 25 1 1.4560 -1.6688 -1.4108 26 1 3.3166 -3.2315 -1.3216 27 1 4.9611 -2.5516 -1.2854 28 1 4.4246 -1.1485 -3.2582 29 1 2.7800 -1.8284 -3.2944 30 1 3.7259 -4.0963 -3.6299 31 1 5.3702 -3.4156 -3.5934 32 1 5.1745 -5.1934 -4.9230 33 1 3.8892 -3.6186 0.3795 34 1 2.9418 -3.3305 1.8589 35 1 2.1337 -3.3445 0.2732 36 1 4.7038 -0.0941 1.3478 37 1 4.4388 -1.4374 2.4847 38 1 5.4116 -1.6932 1.0160 39 1 1.3207 -1.4807 1.5848 40 1 2.3895 -0.1064 1.9994 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308426362.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:40 Heat of formation + Delta-G solvation = -25.842509 kcal Electronic energy + Delta-G solvation = -16221.990101 eV Core-core repulsion = 13842.444852 eV Total energy + Delta-G solvation = -2379.545249 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.90464 -34.85487 -33.59435 -32.61624 -30.14304 -27.65844 -26.97895 -25.68626 -24.57464 -22.41483 -20.86064 -19.59488 -18.62795 -16.66555 -15.89686 -15.13080 -14.69060 -14.47569 -13.69919 -13.55393 -13.30289 -13.01178 -12.95800 -12.62384 -12.28587 -12.09833 -11.78447 -11.74230 -11.31677 -11.21736 -11.00175 -10.71700 -10.65338 -10.47880 -10.41675 -10.27347 -10.08846 -9.74259 -9.65779 -8.48409 -8.27627 -8.07503 -6.31792 -3.99977 3.46153 3.49924 3.65671 4.14733 4.57983 4.61097 4.65868 4.87985 5.09822 5.24628 5.34423 5.45530 5.49351 5.55930 5.59071 5.66181 5.68944 5.78831 5.79722 5.81969 5.93433 5.97549 6.01237 6.04222 6.11321 6.26067 6.31599 6.32730 6.41517 6.62792 6.73730 6.99136 7.26673 7.40725 7.48310 7.61523 8.28584 8.52113 8.93961 9.72264 11.08950 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.037874 B = 0.005631 C = 0.005177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.114642 B = 4971.508303 C = 5406.924259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.098 4.098 3 H 0.080 0.920 4 C 0.042 3.958 5 N -0.508 5.508 6 C 0.041 3.959 7 C -0.101 4.101 8 C 0.009 3.991 9 C -0.599 4.599 10 H 0.048 0.952 11 C 0.013 3.987 12 N -0.916 5.916 13 Si 1.071 2.929 14 H -0.288 1.288 15 H -0.289 1.289 16 H -0.285 1.285 17 C 0.084 3.916 18 C -0.169 4.169 19 C -0.126 4.126 20 C -0.117 4.117 21 H 0.054 0.946 22 H 0.056 0.944 23 H 0.053 0.947 24 H 0.081 0.919 25 H 0.044 0.956 26 H 0.039 0.961 27 H 0.068 0.932 28 H 0.055 0.945 29 H 0.048 0.952 30 H 0.004 0.996 31 H 0.006 0.994 32 H 0.268 0.732 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.054 0.946 36 H 0.059 0.941 37 H 0.052 0.948 38 H 0.054 0.946 39 H 0.066 0.934 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.759 8.096 14.983 18.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.117 4.117 3 H 0.098 0.902 4 C -0.086 4.086 5 N -0.232 5.232 6 C -0.086 4.086 7 C -0.139 4.139 8 C -0.028 4.028 9 C -0.637 4.637 10 H 0.066 0.934 11 C -0.190 4.190 12 N -0.552 5.552 13 Si 0.900 3.100 14 H -0.215 1.215 15 H -0.215 1.215 16 H -0.210 1.210 17 C -0.005 4.005 18 C -0.228 4.228 19 C -0.184 4.184 20 C -0.155 4.155 21 H 0.073 0.927 22 H 0.075 0.925 23 H 0.072 0.928 24 H 0.100 0.900 25 H 0.062 0.938 26 H 0.057 0.943 27 H 0.086 0.914 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.022 0.978 31 H 0.024 0.976 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.084 0.916 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.082 7.899 13.395 16.698 hybrid contribution -0.807 -0.137 1.603 1.800 sum -6.890 7.762 14.998 18.239 Atomic orbital electron populations 1.21770 0.94871 1.01783 1.01564 1.22076 0.95074 0.99678 0.94874 0.90206 1.23236 0.89392 0.98339 0.97584 1.64921 1.22750 1.34520 1.00982 1.22562 0.99773 0.91341 0.94953 1.21570 1.00537 1.00532 0.91287 1.19193 0.95295 0.92912 0.95416 1.22087 1.46445 1.03613 0.91578 0.93362 1.25859 0.93750 0.93448 1.05992 1.70753 1.43137 1.22368 1.18961 0.83514 0.76310 0.75529 0.74655 1.21453 1.21524 1.21034 1.21799 0.95298 0.93411 0.90036 1.22436 1.02111 0.96724 1.01514 1.21722 0.96725 1.01788 0.98158 1.22599 0.96561 0.98576 0.97775 0.92733 0.92459 0.92766 0.90013 0.93790 0.94269 0.91385 0.92634 0.93325 0.97821 0.97556 0.92157 0.91614 0.92533 0.92698 0.92173 0.92946 0.92651 0.91568 0.91312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.16 37.16 0.34 -1.06 16 2 C -0.10 -1.14 3.66 -88.76 -0.32 -1.47 16 3 H 0.08 0.93 8.14 -51.92 -0.42 0.50 16 4 C 0.04 0.62 4.53 -1.90 -0.01 0.61 16 5 N -0.51 -8.01 5.02 -215.00 -1.08 -9.09 16 6 C 0.04 0.75 3.99 -3.82 -0.02 0.74 16 7 C -0.10 -2.21 4.81 -26.73 -0.13 -2.34 16 8 C 0.01 0.25 4.28 -27.89 -0.12 0.13 16 9 C -0.60 -17.67 9.11 -34.44 -0.31 -17.99 16 10 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 11 C 0.01 0.38 5.46 -17.82 -0.10 0.28 16 12 N -0.92 -28.78 13.65 55.43 0.76 -28.03 16 13 Si 1.07 25.99 29.90 -169.99 -5.08 20.91 16 14 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 15 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 16 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 17 C 0.08 1.10 0.89 -130.53 -0.12 0.98 16 18 C -0.17 -2.17 6.94 37.16 0.26 -1.92 16 19 C -0.13 -1.51 8.63 37.16 0.32 -1.19 16 20 C -0.12 -1.31 5.79 -25.38 -0.15 -1.46 16 21 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 22 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 23 H 0.05 0.55 8.10 -51.93 -0.42 0.13 16 24 H 0.08 1.26 7.66 -51.93 -0.40 0.86 16 25 H 0.04 0.67 7.88 -51.93 -0.41 0.27 16 26 H 0.04 0.71 5.68 -51.93 -0.29 0.42 16 27 H 0.07 1.26 8.12 -51.93 -0.42 0.84 16 28 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.05 1.05 6.79 -51.93 -0.35 0.70 16 30 H 0.00 0.10 8.01 -51.93 -0.42 -0.32 16 31 H 0.01 0.17 8.01 -51.93 -0.42 -0.24 16 32 H 0.27 8.40 7.22 -40.82 -0.29 8.10 16 33 H 0.06 0.91 6.61 -51.93 -0.34 0.57 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.05 0.74 7.73 -51.93 -0.40 0.34 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.70 7.39 -51.93 -0.38 0.31 16 40 H 0.07 0.69 7.69 -51.93 -0.40 0.29 16 LS Contribution 306.90 15.07 4.62 4.62 Total: -1.00 -30.97 306.90 -8.67 -39.63 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -7.53 Total: -3.38 kcal Atomic # 6 Polarization: -24.33 SS G_CDS: -0.35 Total: -24.68 kcal Atomic # 7 Polarization: -36.79 SS G_CDS: -0.32 Total: -37.12 kcal Atomic # 14 Polarization: 25.99 SS G_CDS: -5.08 Total: 20.91 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.97 -8.67 -39.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308426362.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.792 kcal (2) G-P(sol) polarization free energy of solvation -30.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds