Wall clock time and date at job start Sun Mar 29 2020 21:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09011 * 110.64352 * 2 1 4 4 C 1.54935 * 110.72462 * 236.65534 * 2 1 3 5 5 N 1.48537 * 103.22505 * 204.22418 * 4 2 1 6 6 C 1.46904 * 110.99690 * 159.71870 * 5 4 2 7 7 C 1.52997 * 109.47265 * 52.60645 * 6 5 4 8 8 C 1.52999 * 109.47415 * 179.97438 * 7 6 5 9 9 C 1.50695 * 109.47057 * 180.02562 * 8 7 6 10 10 H 1.07999 * 120.00538 * 359.97438 * 9 8 7 11 11 C 1.37881 * 119.99661 * 179.97438 * 9 8 7 12 12 N 1.31520 * 120.00186 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00030 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.47297 * 89.99863 * 13 11 9 15 15 H 1.48503 * 109.47261 * 330.00044 * 13 11 9 16 16 H 1.48500 * 109.47454 * 210.00037 * 13 11 9 17 17 C 1.47898 * 105.81911 * 39.20850 * 5 4 2 18 18 C 1.53000 * 109.92048 * 94.01844 * 17 5 4 19 19 C 1.52998 * 109.91942 * 215.31270 * 17 5 4 20 20 C 1.53995 * 107.05810 * 334.66869 * 17 5 4 21 21 H 1.09002 * 109.47054 * 296.85046 * 1 2 3 22 22 H 1.09003 * 109.46969 * 56.84809 * 1 2 3 23 23 H 1.08996 * 109.47043 * 176.84542 * 1 2 3 24 24 H 1.08996 * 110.67040 * 85.79286 * 4 2 1 25 25 H 1.08997 * 110.66657 * 322.65896 * 4 2 1 26 26 H 1.09002 * 109.47117 * 292.60339 * 6 5 4 27 27 H 1.08998 * 109.47117 * 172.60457 * 6 5 4 28 28 H 1.09002 * 109.47302 * 59.99808 * 7 6 5 29 29 H 1.08998 * 109.46899 * 299.99946 * 7 6 5 30 30 H 1.09002 * 109.46997 * 59.99676 * 8 7 6 31 31 H 1.09000 * 109.46625 * 300.00101 * 8 7 6 32 32 H 0.97001 * 119.99697 * 359.97438 * 12 11 9 33 33 H 1.08999 * 109.47067 * 59.99825 * 18 17 5 34 34 H 1.08999 * 109.47379 * 180.02562 * 18 17 5 35 35 H 1.09003 * 109.47377 * 300.00532 * 18 17 5 36 36 H 1.09003 * 109.47115 * 59.99757 * 19 17 5 37 37 H 1.08997 * 109.47479 * 179.97438 * 19 17 5 38 38 H 1.08999 * 109.47212 * 300.00012 * 19 17 5 39 39 H 1.09002 * 110.31022 * 120.14461 * 20 17 5 40 40 H 1.09003 * 110.30790 * 242.31092 * 20 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0201 0.0000 4 6 2.0783 -0.7965 -1.2105 5 7 3.4318 -1.2104 -0.7601 6 6 3.9212 -2.3523 -1.5441 7 6 3.8199 -2.0277 -3.0358 8 6 4.3302 -3.2168 -3.8523 9 6 4.2310 -2.8968 -5.3215 10 1 3.8425 -1.9411 -5.6411 11 6 4.6363 -3.8242 -6.2579 12 7 5.1100 -4.9878 -5.8688 13 14 4.5128 -3.4279 -8.0792 14 1 5.7731 -2.7868 -8.5329 15 1 3.3756 -2.5007 -8.3080 16 1 4.2913 -4.6810 -8.8446 17 6 3.2893 -1.5696 0.6675 18 6 3.0462 -3.0740 0.8047 19 6 4.5517 -1.1700 1.4341 20 6 2.0770 -0.7907 1.2105 21 1 -0.3633 0.4642 0.9169 22 1 -0.3633 0.5620 -0.8604 23 1 -0.3633 -1.0261 -0.0566 24 1 2.1444 -0.1593 -2.0923 25 1 1.4560 -1.6688 -1.4108 26 1 3.3166 -3.2315 -1.3216 27 1 4.9611 -2.5516 -1.2854 28 1 4.4246 -1.1485 -3.2582 29 1 2.7800 -1.8284 -3.2944 30 1 3.7259 -4.0963 -3.6299 31 1 5.3702 -3.4156 -3.5934 32 1 5.1745 -5.1934 -4.9230 33 1 3.8892 -3.6186 0.3795 34 1 2.9418 -3.3305 1.8589 35 1 2.1337 -3.3445 0.2732 36 1 4.7038 -0.0941 1.3478 37 1 4.4388 -1.4374 2.4847 38 1 5.4116 -1.6932 1.0160 39 1 1.3207 -1.4807 1.5848 40 1 2.3895 -0.1064 1.9994 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308426362.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:40 Heat of formation + Delta-G solvation = -44.357765 kcal Electronic energy + Delta-G solvation = -16222.792982 eV Core-core repulsion = 13842.444852 eV Total energy + Delta-G solvation = -2380.348131 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.03555 -36.67395 -34.92118 -34.17238 -31.80864 -28.79429 -28.05236 -27.16621 -25.99613 -24.30465 -22.31347 -20.86720 -19.80697 -18.86176 -17.02759 -16.35197 -16.20449 -15.70960 -15.61845 -14.96369 -14.56098 -14.51335 -14.17013 -13.76988 -13.71725 -13.24832 -13.12606 -12.97958 -12.72031 -12.55125 -12.40525 -12.20062 -11.96188 -11.93124 -11.75103 -11.66583 -11.49737 -11.39308 -11.26735 -10.68077 -10.56848 -9.34504 -8.72455 -6.42606 1.50459 1.60233 1.78301 2.54640 2.95743 3.12919 3.58474 3.66248 3.90593 4.10120 4.11799 4.20101 4.29675 4.40093 4.53659 4.54936 4.57960 4.65992 4.73814 4.76483 4.82298 4.87442 4.89358 4.95169 4.99993 5.02400 5.05101 5.14919 5.19975 5.31914 5.38071 5.40635 5.46621 5.49227 5.95380 6.03761 6.13741 6.16344 6.54930 7.39697 8.68371 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.037874 B = 0.005631 C = 0.005177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.114642 B = 4971.508303 C = 5406.924259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.091 4.091 3 H 0.083 0.917 4 C 0.037 3.963 5 N -0.517 5.517 6 C 0.056 3.944 7 C -0.086 4.086 8 C 0.011 3.989 9 C -0.620 4.620 10 H 0.048 0.952 11 C -0.040 4.040 12 N -0.937 5.937 13 Si 1.122 2.878 14 H -0.271 1.271 15 H -0.269 1.269 16 H -0.280 1.280 17 C 0.077 3.923 18 C -0.167 4.167 19 C -0.123 4.123 20 C -0.111 4.111 21 H 0.074 0.926 22 H 0.057 0.943 23 H 0.050 0.950 24 H 0.068 0.932 25 H 0.033 0.967 26 H 0.037 0.963 27 H 0.061 0.939 28 H 0.047 0.953 29 H 0.048 0.952 30 H -0.014 1.014 31 H -0.013 1.013 32 H 0.254 0.746 33 H 0.048 0.952 34 H 0.080 0.920 35 H 0.044 0.956 36 H 0.060 0.940 37 H 0.076 0.924 38 H 0.039 0.961 39 H 0.077 0.923 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.718 9.400 15.871 19.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.110 4.110 3 H 0.101 0.899 4 C -0.091 4.091 5 N -0.241 5.241 6 C -0.072 4.072 7 C -0.124 4.124 8 C -0.026 4.026 9 C -0.658 4.658 10 H 0.067 0.933 11 C -0.237 4.237 12 N -0.575 5.575 13 Si 0.942 3.058 14 H -0.196 1.196 15 H -0.194 1.194 16 H -0.206 1.206 17 C -0.012 4.012 18 C -0.225 4.225 19 C -0.181 4.181 20 C -0.149 4.149 21 H 0.092 0.908 22 H 0.076 0.924 23 H 0.069 0.931 24 H 0.086 0.914 25 H 0.051 0.949 26 H 0.056 0.944 27 H 0.079 0.921 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.005 0.995 31 H 0.006 0.994 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.099 0.901 35 H 0.064 0.936 36 H 0.079 0.921 37 H 0.095 0.905 38 H 0.058 0.942 39 H 0.095 0.905 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.046 9.217 14.319 18.429 hybrid contribution -0.501 -0.546 1.375 1.562 sum -7.547 8.671 15.693 19.453 Atomic orbital electron populations 1.21744 0.93334 1.01838 1.02671 1.22051 0.96282 0.99282 0.93374 0.89854 1.23280 0.88869 0.98180 0.98769 1.64898 1.23631 1.33095 1.02459 1.22251 0.99616 0.92388 0.92915 1.21334 0.99878 0.97912 0.93240 1.19127 0.93997 0.94174 0.95314 1.22509 1.46347 1.03745 0.93157 0.93316 1.27524 0.92544 0.92728 1.10904 1.70894 1.44850 1.23598 1.18111 0.82888 0.77718 0.76032 0.69127 1.19637 1.19388 1.20556 1.21996 0.96994 0.93918 0.88285 1.22401 1.00866 0.96410 1.02833 1.21720 0.95473 1.01601 0.99314 1.22600 0.95725 0.98758 0.97823 0.90750 0.92374 0.93128 0.91351 0.94854 0.94443 0.92090 0.93425 0.93281 0.99526 0.99430 0.93635 0.93308 0.90085 0.93646 0.92113 0.90473 0.94163 0.90471 0.89408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 9.16 71.98 0.66 -1.73 16 2 C -0.09 -1.93 3.66 -9.59 -0.04 -1.96 16 3 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 4 C 0.04 1.06 4.53 86.65 0.39 1.45 16 5 N -0.52 -16.08 5.02 -834.13 -4.19 -20.27 16 6 C 0.06 2.10 3.99 86.30 0.34 2.44 16 7 C -0.09 -3.83 4.81 30.59 0.15 -3.68 16 8 C 0.01 0.63 4.28 29.85 0.13 0.76 16 9 C -0.62 -37.17 9.11 25.60 0.23 -36.94 16 10 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 11 C -0.04 -2.40 5.46 84.65 0.46 -1.94 16 12 N -0.94 -59.98 13.65 21.45 0.29 -59.68 16 13 Si 1.12 51.75 29.90 68.60 2.05 53.80 16 14 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 15 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 16 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 17 C 0.08 1.89 0.89 3.67 0.00 1.89 16 18 C -0.17 -4.08 6.94 71.98 0.50 -3.58 16 19 C -0.12 -2.71 8.63 71.98 0.62 -2.09 16 20 C -0.11 -2.16 5.79 31.47 0.18 -1.98 16 21 H 0.07 1.01 8.14 -2.39 -0.02 1.00 16 22 H 0.06 0.99 8.14 -2.39 -0.02 0.98 16 23 H 0.05 0.92 8.10 -2.39 -0.02 0.90 16 24 H 0.07 2.11 7.66 -2.39 -0.02 2.09 16 25 H 0.03 1.02 7.88 -2.39 -0.02 1.00 16 26 H 0.04 1.40 5.68 -2.39 -0.01 1.39 16 27 H 0.06 2.33 8.12 -2.39 -0.02 2.31 16 28 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.05 2.16 6.79 -2.39 -0.02 2.14 16 30 H -0.01 -0.79 8.01 -2.39 -0.02 -0.80 16 31 H -0.01 -0.73 8.01 -2.39 -0.02 -0.75 16 32 H 0.25 16.51 7.22 -92.71 -0.67 15.85 16 33 H 0.05 1.34 6.61 -2.39 -0.02 1.33 16 34 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.04 1.18 7.73 -2.39 -0.02 1.16 16 36 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.08 1.36 7.39 -2.39 -0.02 1.34 16 40 H 0.09 1.42 7.69 -2.39 -0.02 1.40 16 Total: -1.00 -66.95 306.90 2.86 -64.10 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: 1.06 Total: 9.41 kcal Atomic # 6 Polarization: -51.00 SS G_CDS: 3.64 Total: -47.36 kcal Atomic # 7 Polarization: -76.06 SS G_CDS: -3.89 Total: -79.95 kcal Atomic # 14 Polarization: 51.75 SS G_CDS: 2.05 Total: 53.80 kcal Total: -66.95 2.86 -64.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308426362.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.741 kcal (2) G-P(sol) polarization free energy of solvation -66.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds