Wall clock time and date at job start Sun Mar 29 2020 21:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47504 * 2 1 4 4 C 1.50704 * 109.47532 * 119.99956 * 2 1 3 5 5 H 1.07992 * 120.00272 * 119.99701 * 4 2 1 6 6 C 1.37880 * 119.99437 * 300.00505 * 4 2 1 7 7 N 1.31516 * 119.99543 * 179.97438 * 6 4 2 8 8 Si 1.86802 * 120.00336 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.46884 * 90.00394 * 8 6 4 10 10 H 1.48502 * 109.47012 * 210.00280 * 8 6 4 11 11 H 1.48497 * 109.47035 * 330.00135 * 8 6 4 12 12 N 1.46900 * 109.47182 * 239.99777 * 2 1 3 13 13 C 1.46902 * 111.00265 * 183.95222 * 12 2 1 14 14 C 1.46902 * 110.99938 * 60.00109 * 12 2 1 15 15 C 1.53000 * 109.47155 * 195.78254 * 14 12 2 16 16 C 1.52998 * 109.46920 * 183.34012 * 15 14 12 17 17 C 1.53000 * 109.46920 * 180.02562 * 16 15 14 18 18 C 1.53001 * 109.47395 * 59.99969 * 17 16 15 19 19 C 1.52999 * 109.47162 * 300.00306 * 18 17 16 20 20 C 1.53000 * 109.47215 * 59.99584 * 19 18 17 21 21 H 1.09002 * 109.46774 * 180.02562 * 1 2 3 22 22 H 1.08995 * 109.46720 * 59.99750 * 1 2 3 23 23 H 1.09001 * 109.46842 * 300.00181 * 1 2 3 24 24 H 0.97000 * 120.00039 * 179.97438 * 7 6 4 25 25 H 1.09004 * 109.46867 * 63.15391 * 13 12 2 26 26 H 1.08997 * 109.47204 * 183.15715 * 13 12 2 27 27 H 1.08998 * 109.47355 * 303.15877 * 13 12 2 28 28 H 1.09005 * 109.47052 * 315.78193 * 14 12 2 29 29 H 1.09006 * 109.47142 * 75.78209 * 14 12 2 30 30 H 1.08998 * 109.46974 * 303.33669 * 15 14 12 31 31 H 1.08998 * 109.47017 * 299.99631 * 16 15 14 32 32 H 1.08997 * 109.47694 * 60.00273 * 16 15 14 33 33 H 1.08997 * 109.47212 * 300.00149 * 17 16 15 34 34 H 1.09003 * 109.47212 * 179.97438 * 17 16 15 35 35 H 1.08991 * 109.47381 * 179.97438 * 18 17 16 36 36 H 1.09005 * 109.46722 * 59.99633 * 18 17 16 37 37 H 1.09007 * 109.46470 * 299.99773 * 19 18 17 38 38 H 1.08995 * 109.47728 * 180.02562 * 19 18 17 39 39 H 1.09003 * 109.47212 * 180.02562 * 20 19 18 40 40 H 1.08997 * 109.47212 * 60.00093 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0325 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1373 -0.8595 3.5565 8 14 0.6257 1.2798 2.6541 9 1 -0.8021 0.8743 2.6993 10 1 0.9771 1.9954 3.9070 11 1 0.8489 2.1773 1.4923 12 7 2.0197 -0.6925 -1.1994 13 6 3.4851 -0.7946 -1.1871 14 6 1.5487 -0.0264 -2.4211 15 6 1.7313 -0.9643 -3.6161 16 6 1.3187 -0.2410 -4.8996 17 6 1.5007 -1.1790 -6.0946 18 6 0.6273 -2.4210 -5.9057 19 6 1.0399 -3.1442 -4.6221 20 6 0.8579 -2.2062 -3.4272 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3632 0.5139 -0.8899 23 1 -0.3633 0.5139 0.8900 24 1 1.9033 -0.5279 4.4375 25 1 3.8000 -1.4005 -0.3374 26 1 3.8247 -1.2610 -2.1118 27 1 3.9181 0.2022 -1.1027 28 1 0.4933 0.2247 -2.3142 29 1 2.1244 0.8849 -2.5831 30 1 2.7773 -1.2625 -3.6873 31 1 0.2727 0.0573 -4.8284 32 1 1.9406 0.6440 -5.0341 33 1 2.5465 -1.4778 -6.1660 34 1 1.2063 -0.6639 -7.0090 35 1 0.7566 -3.0890 -6.7572 36 1 -0.4185 -2.1222 -5.8343 37 1 2.0858 -3.4429 -4.6936 38 1 0.4180 -4.0293 -4.4877 39 1 1.1522 -2.7213 -2.5127 40 1 -0.1879 -1.9074 -3.3558 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042492963.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:21 Heat of formation + Delta-G solvation = -16.245959 kcal Electronic energy + Delta-G solvation = -16526.337697 eV Core-core repulsion = 14147.208586 eV Total energy + Delta-G solvation = -2379.129111 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.81329 -36.66173 -32.90827 -31.27103 -30.54159 -29.77391 -26.48959 -24.46332 -23.55995 -22.36915 -20.84962 -19.47196 -19.15434 -16.75241 -15.55834 -14.86948 -14.60319 -14.33072 -13.95119 -13.73883 -13.55187 -13.05614 -12.58034 -12.37890 -12.06685 -11.94748 -11.85280 -11.50140 -11.15269 -10.95723 -10.90840 -10.64621 -10.52373 -10.50644 -10.11676 -9.93878 -9.83331 -9.70622 -9.42614 -8.95930 -8.54171 -7.26081 -6.04820 -4.02882 3.27666 3.37499 3.39625 4.41493 4.70826 4.84066 4.93914 5.05884 5.27513 5.33352 5.46246 5.62412 5.66759 5.71860 5.74016 5.77120 5.95289 6.05624 6.09799 6.15683 6.19623 6.28866 6.33164 6.35373 6.38726 6.46006 6.48885 6.57254 6.62632 6.75862 6.84283 6.88891 6.95008 7.32663 7.63470 8.01286 8.16032 8.69735 9.02201 9.57700 11.08034 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.046742 B = 0.006547 C = 0.006378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.885904 B = 4275.575515 C = 4389.232499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.181 3.819 3 H -0.005 1.005 4 C -0.503 4.503 5 H 0.083 0.917 6 C 0.069 3.931 7 N -0.901 5.901 8 Si 0.886 3.114 9 H -0.279 1.279 10 H -0.298 1.298 11 H -0.270 1.270 12 N -0.524 5.524 13 C 0.038 3.962 14 C 0.049 3.951 15 C -0.079 4.079 16 C -0.115 4.115 17 C -0.116 4.116 18 C -0.119 4.119 19 C -0.120 4.120 20 C -0.104 4.104 21 H 0.060 0.940 22 H 0.029 0.971 23 H 0.040 0.960 24 H 0.263 0.737 25 H 0.078 0.922 26 H 0.046 0.954 27 H 0.011 0.989 28 H 0.072 0.928 29 H 0.020 0.980 30 H 0.066 0.934 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.056 0.944 39 H 0.080 0.920 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.238 0.033 -16.718 16.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.074 3.926 3 H 0.012 0.988 4 C -0.542 4.542 5 H 0.101 0.899 6 C -0.132 4.132 7 N -0.539 5.539 8 Si 0.717 3.283 9 H -0.206 1.206 10 H -0.226 1.226 11 H -0.195 1.195 12 N -0.248 5.248 13 C -0.110 4.110 14 C -0.079 4.079 15 C -0.098 4.098 16 C -0.153 4.153 17 C -0.154 4.154 18 C -0.156 4.156 19 C -0.158 4.158 20 C -0.142 4.142 21 H 0.079 0.921 22 H 0.048 0.952 23 H 0.058 0.942 24 H 0.073 0.927 25 H 0.097 0.903 26 H 0.064 0.936 27 H 0.030 0.970 28 H 0.090 0.910 29 H 0.038 0.962 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.099 0.901 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.426 -0.443 -16.497 16.681 hybrid contribution -0.308 1.707 0.265 1.755 sum -2.733 1.264 -16.232 16.509 Atomic orbital electron populations 1.22216 0.98678 1.01295 0.98064 1.19681 0.91360 0.92530 0.89070 0.98768 1.21007 1.31739 1.13486 0.87926 0.89923 1.24929 0.95864 0.96587 0.95852 1.69883 1.45880 1.40308 0.97842 0.86883 0.80792 0.83904 0.76733 1.20570 1.22552 1.19530 1.61906 1.09708 1.51911 1.01271 1.22237 0.88198 0.99419 1.01137 1.22245 1.00544 0.94320 0.90803 1.21129 0.99887 0.95684 0.93106 1.21573 1.01278 0.97808 0.94627 1.21499 0.99937 0.96288 0.97656 1.21537 0.99602 0.96800 0.97671 1.21571 1.01024 0.98181 0.95009 1.21445 0.99228 0.95464 0.98044 0.92051 0.95199 0.94189 0.92684 0.90333 0.93563 0.97042 0.91012 0.96220 0.91541 0.92226 0.92552 0.92277 0.92646 0.92765 0.92298 0.92408 0.92514 0.90119 0.92756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.24 8.50 37.16 0.32 -2.92 16 2 C 0.18 4.35 1.65 -68.86 -0.11 4.24 16 3 H -0.01 -0.13 7.20 -51.93 -0.37 -0.50 16 4 C -0.50 -14.14 8.54 -34.44 -0.29 -14.44 16 5 H 0.08 2.51 6.64 -52.49 -0.35 2.16 16 6 C 0.07 2.00 5.45 -17.82 -0.10 1.90 16 7 N -0.90 -27.59 13.96 55.43 0.77 -26.82 16 8 Si 0.89 22.23 24.37 -169.99 -4.14 18.08 16 9 H -0.28 -6.81 6.87 56.52 0.39 -6.42 16 10 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16 11 H -0.27 -6.57 6.53 56.52 0.37 -6.20 16 12 N -0.52 -10.84 3.96 -236.27 -0.94 -11.78 16 13 C 0.04 0.76 9.04 60.07 0.54 1.30 16 14 C 0.05 0.85 4.24 -3.82 -0.02 0.84 16 15 C -0.08 -1.13 2.19 -90.62 -0.20 -1.33 16 16 C -0.11 -1.38 5.20 -26.73 -0.14 -1.52 16 17 C -0.12 -1.22 5.92 -26.73 -0.16 -1.38 16 18 C -0.12 -1.25 5.92 -26.73 -0.16 -1.40 16 19 C -0.12 -1.43 5.92 -26.73 -0.16 -1.59 16 20 C -0.10 -1.49 5.08 -26.73 -0.14 -1.62 16 21 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 22 H 0.03 0.57 6.10 -51.93 -0.32 0.26 16 23 H 0.04 0.93 3.27 -51.93 -0.17 0.76 16 24 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 25 H 0.08 1.70 6.35 -51.93 -0.33 1.37 16 26 H 0.05 0.78 6.41 -51.93 -0.33 0.44 16 27 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.07 1.24 5.63 -51.93 -0.29 0.95 16 29 H 0.02 0.34 8.06 -51.93 -0.42 -0.08 16 30 H 0.07 0.98 6.52 -51.93 -0.34 0.64 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.08 1.35 7.70 -51.93 -0.40 0.95 16 40 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 292.21 15.07 4.40 4.40 Total: -1.00 -29.19 292.21 -7.67 -36.86 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: -7.15 Total: -2.82 kcal Atomic # 6 Polarization: -17.32 SS G_CDS: -0.61 Total: -17.93 kcal Atomic # 7 Polarization: -38.44 SS G_CDS: -0.16 Total: -38.60 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.14 Total: 18.08 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -29.19 -7.67 -36.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042492963.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.610 kcal (2) G-P(sol) polarization free energy of solvation -29.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds