Wall clock time and date at job start Sun Mar 29 2020 21:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47504 * 2 1 4 4 C 1.50704 * 109.47532 * 119.99956 * 2 1 3 5 5 H 1.07992 * 120.00272 * 119.99701 * 4 2 1 6 6 C 1.37880 * 119.99437 * 300.00505 * 4 2 1 7 7 N 1.31516 * 119.99543 * 179.97438 * 6 4 2 8 8 Si 1.86802 * 120.00336 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.46884 * 90.00394 * 8 6 4 10 10 H 1.48502 * 109.47012 * 210.00280 * 8 6 4 11 11 H 1.48497 * 109.47035 * 330.00135 * 8 6 4 12 12 N 1.46900 * 109.47182 * 239.99777 * 2 1 3 13 13 C 1.46902 * 111.00265 * 183.95222 * 12 2 1 14 14 C 1.46902 * 110.99938 * 60.00109 * 12 2 1 15 15 C 1.53000 * 109.47155 * 195.78254 * 14 12 2 16 16 C 1.52998 * 109.46920 * 183.34012 * 15 14 12 17 17 C 1.53000 * 109.46920 * 180.02562 * 16 15 14 18 18 C 1.53001 * 109.47395 * 59.99969 * 17 16 15 19 19 C 1.52999 * 109.47162 * 300.00306 * 18 17 16 20 20 C 1.53000 * 109.47215 * 59.99584 * 19 18 17 21 21 H 1.09002 * 109.46774 * 180.02562 * 1 2 3 22 22 H 1.08995 * 109.46720 * 59.99750 * 1 2 3 23 23 H 1.09001 * 109.46842 * 300.00181 * 1 2 3 24 24 H 0.97000 * 120.00039 * 179.97438 * 7 6 4 25 25 H 1.09004 * 109.46867 * 63.15391 * 13 12 2 26 26 H 1.08997 * 109.47204 * 183.15715 * 13 12 2 27 27 H 1.08998 * 109.47355 * 303.15877 * 13 12 2 28 28 H 1.09005 * 109.47052 * 315.78193 * 14 12 2 29 29 H 1.09006 * 109.47142 * 75.78209 * 14 12 2 30 30 H 1.08998 * 109.46974 * 303.33669 * 15 14 12 31 31 H 1.08998 * 109.47017 * 299.99631 * 16 15 14 32 32 H 1.08997 * 109.47694 * 60.00273 * 16 15 14 33 33 H 1.08997 * 109.47212 * 300.00149 * 17 16 15 34 34 H 1.09003 * 109.47212 * 179.97438 * 17 16 15 35 35 H 1.08991 * 109.47381 * 179.97438 * 18 17 16 36 36 H 1.09005 * 109.46722 * 59.99633 * 18 17 16 37 37 H 1.09007 * 109.46470 * 299.99773 * 19 18 17 38 38 H 1.08995 * 109.47728 * 180.02562 * 19 18 17 39 39 H 1.09003 * 109.47212 * 180.02562 * 20 19 18 40 40 H 1.08997 * 109.47212 * 60.00093 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0325 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1373 -0.8595 3.5565 8 14 0.6257 1.2798 2.6541 9 1 -0.8021 0.8743 2.6993 10 1 0.9771 1.9954 3.9070 11 1 0.8489 2.1773 1.4923 12 7 2.0197 -0.6925 -1.1994 13 6 3.4851 -0.7946 -1.1871 14 6 1.5487 -0.0264 -2.4211 15 6 1.7313 -0.9643 -3.6161 16 6 1.3187 -0.2410 -4.8996 17 6 1.5007 -1.1790 -6.0946 18 6 0.6273 -2.4210 -5.9057 19 6 1.0399 -3.1442 -4.6221 20 6 0.8579 -2.2062 -3.4272 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3632 0.5139 -0.8899 23 1 -0.3633 0.5139 0.8900 24 1 1.9033 -0.5279 4.4375 25 1 3.8000 -1.4005 -0.3374 26 1 3.8247 -1.2610 -2.1118 27 1 3.9181 0.2022 -1.1027 28 1 0.4933 0.2247 -2.3142 29 1 2.1244 0.8849 -2.5831 30 1 2.7773 -1.2625 -3.6873 31 1 0.2727 0.0573 -4.8284 32 1 1.9406 0.6440 -5.0341 33 1 2.5465 -1.4778 -6.1660 34 1 1.2063 -0.6639 -7.0090 35 1 0.7566 -3.0890 -6.7572 36 1 -0.4185 -2.1222 -5.8343 37 1 2.0858 -3.4429 -4.6936 38 1 0.4180 -4.0293 -4.4877 39 1 1.1522 -2.7213 -2.5127 40 1 -0.1879 -1.9074 -3.3558 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042492963.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:20 Heat of formation + Delta-G solvation = -33.994416 kcal Electronic energy + Delta-G solvation = -16527.107328 eV Core-core repulsion = 14147.208586 eV Total energy + Delta-G solvation = -2379.898742 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.03654 -38.14823 -34.84657 -32.82240 -31.57574 -31.33437 -28.12444 -26.31461 -25.06928 -23.35405 -22.16327 -20.86418 -20.46918 -18.85757 -17.19609 -16.29293 -16.09034 -15.75004 -15.11631 -15.03921 -14.87442 -14.68304 -14.29199 -14.08766 -13.62844 -13.23558 -12.92150 -12.74862 -12.64637 -12.53458 -12.36094 -12.28550 -12.04136 -11.89365 -11.57117 -11.44035 -11.15347 -11.04199 -10.79183 -10.73038 -10.72183 -8.93819 -8.28375 -6.31137 1.28623 1.33482 1.43521 2.30959 3.05026 3.24557 3.82361 3.98902 4.02765 4.25305 4.39599 4.47610 4.50973 4.58122 4.62511 4.63382 4.67750 4.75777 4.77440 4.86567 4.88491 4.91305 4.93750 5.08084 5.12936 5.22436 5.27528 5.35385 5.38299 5.42391 5.45814 5.51960 5.65225 5.68965 5.71127 6.05862 6.41085 6.73484 6.77089 7.33785 8.87970 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.046742 B = 0.006547 C = 0.006378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.885904 B = 4275.575515 C = 4389.232499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.183 3.817 3 H -0.015 1.015 4 C -0.506 4.506 5 H 0.043 0.957 6 C 0.012 3.988 7 N -0.948 5.948 8 Si 0.948 3.052 9 H -0.264 1.264 10 H -0.298 1.298 11 H -0.254 1.254 12 N -0.533 5.533 13 C 0.044 3.956 14 C 0.050 3.950 15 C -0.073 4.073 16 C -0.111 4.111 17 C -0.114 4.114 18 C -0.116 4.116 19 C -0.117 4.117 20 C -0.102 4.102 21 H 0.055 0.945 22 H 0.063 0.937 23 H 0.033 0.967 24 H 0.265 0.735 25 H 0.047 0.953 26 H 0.076 0.924 27 H 0.009 0.991 28 H 0.074 0.926 29 H 0.023 0.977 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.056 0.944 38 H 0.060 0.940 39 H 0.049 0.951 40 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.489 1.236 -19.300 19.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.075 3.925 3 H 0.002 0.998 4 C -0.544 4.544 5 H 0.061 0.939 6 C -0.185 4.185 7 N -0.589 5.589 8 Si 0.775 3.225 9 H -0.190 1.190 10 H -0.226 1.226 11 H -0.179 1.179 12 N -0.257 5.257 13 C -0.104 4.104 14 C -0.078 4.078 15 C -0.092 4.092 16 C -0.149 4.149 17 C -0.151 4.151 18 C -0.153 4.153 19 C -0.155 4.155 20 C -0.140 4.140 21 H 0.074 0.926 22 H 0.082 0.918 23 H 0.052 0.948 24 H 0.074 0.926 25 H 0.065 0.935 26 H 0.095 0.905 27 H 0.028 0.972 28 H 0.092 0.908 29 H 0.041 0.959 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.068 0.932 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.679 0.756 -19.112 19.478 hybrid contribution 0.160 1.243 1.037 1.627 sum -3.518 2.000 -18.075 18.522 Atomic orbital electron populations 1.22108 0.96887 1.01393 0.99359 1.19527 0.92709 0.91412 0.88851 0.99786 1.21251 1.30781 1.12330 0.90027 0.93893 1.25765 0.97433 0.99892 0.95422 1.70032 1.47870 1.42477 0.98506 0.85867 0.79433 0.80115 0.77042 1.19031 1.22585 1.17864 1.61855 1.10092 1.52179 1.01593 1.22155 0.87954 0.98939 1.01352 1.22358 1.00424 0.94965 0.90043 1.21079 0.99714 0.95244 0.93115 1.21541 1.01529 0.98087 0.93707 1.21496 1.00078 0.95984 0.97574 1.21526 0.99685 0.96968 0.97150 1.21537 1.01180 0.97959 0.94822 1.21380 0.98972 0.95771 0.97851 0.92634 0.91819 0.94840 0.92572 0.93459 0.90540 0.97241 0.90763 0.95853 0.91954 0.91870 0.91927 0.92180 0.90856 0.91178 0.92053 0.92503 0.92108 0.93241 0.92905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.99 8.50 71.98 0.61 -5.38 16 2 C 0.18 8.74 1.65 44.17 0.07 8.81 16 3 H -0.02 -0.76 7.20 -2.39 -0.02 -0.77 16 4 C -0.51 -29.21 8.54 25.60 0.22 -28.99 16 5 H 0.04 2.76 6.64 -2.91 -0.02 2.74 16 6 C 0.01 0.70 5.45 84.66 0.46 1.16 16 7 N -0.95 -59.86 13.96 21.45 0.30 -59.57 16 8 Si 0.95 45.62 24.37 68.60 1.67 47.29 16 9 H -0.26 -12.05 6.87 99.48 0.68 -11.37 16 10 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 11 H -0.25 -11.50 6.53 99.48 0.65 -10.85 16 12 N -0.53 -21.89 3.96 -901.43 -3.57 -25.46 16 13 C 0.04 1.76 9.04 127.69 1.15 2.91 16 14 C 0.05 1.62 4.24 86.30 0.37 1.99 16 15 C -0.07 -1.93 2.19 -10.79 -0.02 -1.95 16 16 C -0.11 -2.30 5.20 30.59 0.16 -2.14 16 17 C -0.11 -1.98 5.92 30.59 0.18 -1.80 16 18 C -0.12 -2.05 5.92 30.59 0.18 -1.87 16 19 C -0.12 -2.56 5.92 30.59 0.18 -2.37 16 20 C -0.10 -2.78 5.08 30.60 0.16 -2.62 16 21 H 0.05 2.41 8.14 -2.39 -0.02 2.39 16 22 H 0.06 2.27 6.10 -2.39 -0.01 2.26 16 23 H 0.03 1.46 3.27 -2.39 -0.01 1.46 16 24 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 25 H 0.05 2.15 6.35 -2.38 -0.02 2.13 16 26 H 0.08 2.52 6.41 -2.39 -0.02 2.51 16 27 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 28 H 0.07 2.37 5.63 -2.38 -0.01 2.36 16 29 H 0.02 0.75 8.06 -2.38 -0.02 0.73 16 30 H 0.06 1.71 6.52 -2.39 -0.02 1.69 16 31 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.07 1.05 8.14 -2.39 -0.02 1.04 16 36 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 37 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 38 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.05 1.64 7.70 -2.39 -0.02 1.62 16 40 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -63.87 292.21 3.02 -60.85 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: 0.90 Total: 9.15 kcal Atomic # 6 Polarization: -35.98 SS G_CDS: 3.72 Total: -32.26 kcal Atomic # 7 Polarization: -81.76 SS G_CDS: -3.27 Total: -85.03 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 1.67 Total: 47.29 kcal Total: -63.87 3.02 -60.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042492963.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.852 kcal (2) G-P(sol) polarization free energy of solvation -63.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds