Wall clock time and date at job start Sun Mar 29 2020 21:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86804 * 119.99863 * 2 1 4 4 H 1.48497 * 109.47080 * 240.00245 * 3 2 1 5 5 H 1.48493 * 109.46941 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46912 * 120.00057 * 3 2 1 7 7 C 1.38806 * 120.00110 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00320 * 179.97438 * 7 2 1 9 9 O 1.34853 * 120.00024 * 359.97438 * 7 2 1 10 10 C 1.34749 * 116.99833 * 179.97438 * 9 7 2 11 11 O 1.21507 * 120.00404 * 0.02562 * 10 9 7 12 12 C 1.47589 * 119.99512 * 180.02562 * 10 9 7 13 13 C 1.39715 * 120.16825 * 359.97438 * 12 10 9 14 14 C 1.37868 * 119.85664 * 180.02562 * 13 12 10 15 15 C 1.38439 * 120.19444 * 0.02562 * 14 13 12 16 16 C 1.38285 * 120.33436 * 359.97438 * 15 14 13 17 17 C 1.38134 * 120.13913 * 0.02562 * 16 15 14 18 18 Cl 1.73600 * 120.09972 * 179.97438 * 17 16 15 19 19 H 0.97002 * 120.00248 * 0.02562 * 1 2 3 20 20 H 1.07997 * 120.06749 * 0.02562 * 13 12 10 21 21 H 1.08003 * 119.90573 * 180.02562 * 14 13 12 22 22 H 1.08000 * 119.83867 * 180.02562 * 15 14 13 23 23 H 1.08003 * 119.93218 * 179.74492 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2831 2.7464 0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0082 -1.2021 -0.0005 8 1 3.0882 -1.2021 -0.0010 9 8 1.3340 -2.3700 -0.0005 10 6 2.0679 -3.5000 -0.0016 11 8 3.2813 -3.4364 -0.0021 12 6 1.3978 -4.8150 -0.0023 13 6 0.0028 -4.8922 -0.0012 14 6 -0.6164 -6.1240 -0.0013 15 6 0.1399 -7.2835 -0.0018 16 6 1.5211 -7.2164 -0.0029 17 6 2.1559 -5.9896 -0.0028 18 17 3.8899 -5.9065 -0.0034 19 1 -0.4850 0.8400 -0.0004 20 1 -0.5891 -3.9889 -0.0003 21 1 -1.6948 -6.1846 -0.0009 22 1 -0.3512 -8.2454 -0.0023 23 1 2.1048 -8.1251 0.0008 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000196237261.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:40 Heat of formation + Delta-G solvation = -54.488549 kcal Electronic energy + Delta-G solvation = -12854.465687 eV Core-core repulsion = 10273.336377 eV Total energy + Delta-G solvation = -2581.129310 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 226.018 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.48013 -38.11090 -35.95994 -35.05819 -32.23199 -31.02290 -30.41112 -25.66642 -23.47171 -22.30851 -20.27254 -17.73260 -17.42823 -16.16009 -15.18764 -14.82964 -14.59030 -14.23069 -14.13532 -13.54937 -12.96004 -12.57252 -11.75423 -11.43011 -11.23444 -11.21162 -11.12203 -10.61184 -10.45697 -10.42588 -9.85969 -8.78747 -8.72429 -8.61497 -8.47080 -6.47700 -4.09248 1.07138 1.43378 2.55414 3.13643 3.17189 3.21204 3.43644 3.88931 4.23283 4.46639 4.97163 5.12934 5.13174 5.32176 5.56548 5.72084 6.00148 6.23879 6.44343 6.57067 6.87037 6.98407 7.35579 7.90886 8.70033 9.01217 9.81768 10.70027 Molecular weight = 226.02amu Principal moments of inertia in cm(-1) A = 0.039289 B = 0.008237 C = 0.006826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.504032 B = 3398.367931 C = 4101.030076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.041 3.959 3 Si 0.946 3.054 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.269 1.269 7 C -0.371 4.371 8 H 0.098 0.902 9 O -0.206 6.206 10 C 0.425 3.575 11 O -0.530 6.530 12 C -0.082 4.082 13 C -0.062 4.062 14 C -0.131 4.131 15 C -0.100 4.100 16 C -0.128 4.128 17 C 0.003 3.997 18 Cl -0.040 7.040 19 H 0.271 0.729 20 H 0.149 0.851 21 H 0.130 0.870 22 H 0.129 0.871 23 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.162 -11.250 -0.002 11.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.164 4.164 3 Si 0.770 3.230 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.194 1.194 7 C -0.447 4.447 8 H 0.116 0.884 9 O -0.113 6.113 10 C 0.272 3.728 11 O -0.427 6.427 12 C -0.084 4.084 13 C -0.081 4.081 14 C -0.149 4.149 15 C -0.118 4.118 16 C -0.147 4.147 17 C -0.024 4.024 18 Cl -0.011 7.011 19 H 0.081 0.919 20 H 0.167 0.833 21 H 0.148 0.852 22 H 0.147 0.853 23 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.873 -11.031 -0.001 11.065 hybrid contribution 0.490 0.760 0.000 0.905 sum -0.383 -10.270 -0.001 10.277 Atomic orbital electron populations 1.69962 1.06066 1.28022 1.45603 1.25373 0.95855 0.98935 0.96203 0.85700 0.78641 0.79167 0.79459 1.19387 1.20319 1.19391 1.21272 0.92587 0.79696 1.51159 0.88441 1.83877 1.39201 1.13179 1.75085 1.20552 0.86081 0.85246 0.80903 1.90718 1.14396 1.87503 1.50109 1.19314 0.93541 0.91300 1.04234 1.21648 0.92979 0.99130 0.94345 1.21206 1.00369 0.92096 1.01201 1.21191 0.93007 0.98747 0.98859 1.20924 0.94901 0.95780 1.03111 1.21027 0.86130 0.93563 1.01694 1.98388 1.07870 1.98634 1.96201 0.91867 0.83335 0.85168 0.85265 0.84889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.73 13.67 55.49 0.76 -23.97 14 2 C 0.04 1.14 5.50 -17.52 -0.10 1.04 14 3 Si 0.95 21.17 29.55 -169.99 -5.02 16.14 14 4 H -0.27 -5.90 7.11 56.52 0.40 -5.50 14 5 H -0.28 -5.95 7.11 56.52 0.40 -5.55 14 6 H -0.27 -5.90 7.11 56.52 0.40 -5.50 14 7 C -0.37 -10.95 9.65 30.94 0.30 -10.66 14 8 H 0.10 2.89 6.86 -52.49 -0.36 2.53 14 9 O -0.21 -5.92 8.99 -21.68 -0.19 -6.12 14 10 C 0.42 10.99 7.83 34.55 0.27 11.26 14 11 O -0.53 -14.51 13.22 -19.27 -0.25 -14.76 14 12 C -0.08 -1.70 5.88 -104.95 -0.62 -2.32 14 13 C -0.06 -1.12 9.62 -39.17 -0.38 -1.49 14 14 C -0.13 -1.78 10.03 -39.64 -0.40 -2.18 14 15 C -0.10 -1.22 10.04 -39.49 -0.40 -1.62 14 16 C -0.13 -1.80 9.82 -39.60 -0.39 -2.19 14 17 C 0.00 0.06 6.35 -39.04 -0.25 -0.19 14 18 Cl -0.04 -0.76 26.03 -51.86 -1.35 -2.11 14 19 H 0.27 7.16 8.31 -40.82 -0.34 6.82 14 20 H 0.15 2.79 7.61 -52.49 -0.40 2.39 14 21 H 0.13 1.38 8.06 -52.48 -0.42 0.96 14 22 H 0.13 1.12 8.06 -52.49 -0.42 0.70 14 23 H 0.13 1.50 8.06 -52.48 -0.42 1.07 14 LS Contribution 234.44 15.07 3.53 3.53 Total: -1.00 -32.06 234.44 -5.65 -37.70 By element: Atomic # 1 Polarization: -0.92 SS G_CDS: -1.16 Total: -2.08 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: -1.95 Total: -8.34 kcal Atomic # 7 Polarization: -24.73 SS G_CDS: 0.76 Total: -23.97 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: -0.45 Total: -20.88 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -1.35 Total: -2.11 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -32.06 -5.65 -37.70 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000196237261.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.784 kcal (2) G-P(sol) polarization free energy of solvation -32.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds