Wall clock time and date at job start Sun Mar 29 2020 21:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46893 * 109.47488 * 2 1 4 4 C 1.46897 * 111.00182 * 84.43715 * 3 2 1 5 5 C 1.53000 * 109.47298 * 277.80763 * 4 3 2 6 6 C 1.50702 * 115.54867 * 307.00396 * 5 4 3 7 7 H 1.07995 * 120.00027 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99803 * 179.72306 * 6 5 4 9 9 N 1.31514 * 120.00095 * 0.27758 * 8 6 5 10 10 Si 1.86797 * 119.99765 * 180.27852 * 8 6 5 11 11 H 1.48503 * 109.47245 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47522 * 120.00152 * 10 8 6 13 13 H 1.48507 * 109.47145 * 239.99891 * 10 8 6 14 14 C 1.52995 * 117.50001 * 92.67488 * 5 4 3 15 15 C 1.52999 * 117.50186 * 161.33255 * 5 4 3 16 16 C 1.46897 * 111.00212 * 208.39349 * 3 2 1 17 17 C 1.53004 * 109.46864 * 297.35171 * 16 3 2 18 18 C 1.52995 * 109.47350 * 57.34739 * 16 3 2 19 19 C 1.52997 * 109.47510 * 177.35346 * 16 3 2 20 20 H 1.08992 * 109.47243 * 157.02252 * 1 2 3 21 21 H 1.08999 * 109.46841 * 277.02372 * 1 2 3 22 22 H 1.08998 * 109.47047 * 37.02134 * 1 2 3 23 23 H 1.09007 * 109.46695 * 239.99638 * 2 1 3 24 24 H 1.09005 * 109.47089 * 120.00442 * 2 1 3 25 25 H 1.09004 * 109.47422 * 157.80495 * 4 3 2 26 26 H 1.09002 * 109.46847 * 37.80515 * 4 3 2 27 27 H 0.97000 * 120.00029 * 180.02562 * 9 8 6 28 28 H 1.08999 * 117.50302 * 215.00526 * 14 5 4 29 29 H 1.09002 * 117.49939 * 0.02562 * 14 5 4 30 30 H 1.09005 * 117.49772 * 359.97438 * 15 5 4 31 31 H 1.09005 * 117.49896 * 144.97174 * 15 5 4 32 32 H 1.08994 * 109.47685 * 59.99776 * 17 16 3 33 33 H 1.09009 * 109.47231 * 179.97438 * 17 16 3 34 34 H 1.08999 * 109.47204 * 299.99278 * 17 16 3 35 35 H 1.08996 * 109.47254 * 52.66995 * 18 16 3 36 36 H 1.09000 * 109.47591 * 172.67363 * 18 16 3 37 37 H 1.08999 * 109.47692 * 292.67407 * 18 16 3 38 38 H 1.08995 * 109.47632 * 59.99575 * 19 16 3 39 39 H 1.09003 * 109.47358 * 180.02562 * 19 16 3 40 40 H 1.09004 * 109.46825 * 299.99530 * 19 16 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 2.0699 1.9256 1.3649 5 6 0.6790 2.4173 1.7702 6 6 0.0270 3.3830 0.8145 7 1 0.5422 3.6821 -0.0863 8 6 -1.2299 3.8799 1.0870 9 7 -1.8575 3.5154 2.1837 10 14 -2.0412 5.0709 -0.1015 11 1 -1.1333 5.3197 -1.2500 12 1 -3.3151 4.4880 -0.5942 13 1 -2.3201 6.3525 0.5951 14 6 -0.2299 1.4342 2.5108 15 6 0.4039 2.6068 3.2633 16 6 3.3327 1.4790 -0.6521 17 6 4.3536 0.6556 0.1357 18 6 3.2332 0.9375 -2.0796 19 6 3.7789 2.9420 -0.6916 20 1 -0.3633 -0.9460 -0.4011 21 1 -0.3633 0.1257 1.0200 22 1 -0.3633 0.8205 -0.6188 23 1 1.8933 -0.5139 -0.8900 24 1 1.8934 -0.5139 0.8900 25 1 2.7740 2.7570 1.4008 26 1 2.3942 1.1450 2.0532 27 1 -2.7420 3.8647 2.3753 28 1 -1.2993 1.4859 2.3067 29 1 0.1633 0.4373 2.7096 30 1 1.2138 2.3808 3.9569 31 1 -0.2483 3.4303 3.5543 32 1 4.0358 -0.3866 0.1639 33 1 5.3278 0.7250 -0.3485 34 1 4.4246 1.0414 1.1526 35 1 2.4164 1.4362 -2.6013 36 1 4.1690 1.1256 -2.6057 37 1 3.0431 -0.1354 -2.0488 38 1 3.8498 3.3278 0.3253 39 1 4.7529 3.0118 -1.1759 40 1 3.0516 3.5286 -1.2529 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382150331.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:54 Heat of formation + Delta-G solvation = 40.866541 kcal Electronic energy + Delta-G solvation = -17240.885114 eV Core-core repulsion = 14864.232587 eV Total energy + Delta-G solvation = -2376.652527 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.92702 -36.10766 -32.63725 -31.29296 -29.52845 -27.04968 -26.97236 -25.64105 -24.15934 -21.63045 -20.50740 -18.89752 -18.10842 -16.00156 -15.55193 -14.86406 -14.12282 -13.83916 -13.69191 -13.32136 -13.08387 -12.71495 -12.08017 -11.92719 -11.81021 -11.49355 -11.24296 -11.04216 -10.95519 -10.86670 -10.64485 -10.51705 -10.47029 -10.05616 -10.02986 -9.84412 -9.68317 -9.30758 -8.62165 -8.06640 -7.85217 -7.39001 -5.79145 -3.79698 3.36554 3.45237 3.50093 4.51107 4.53892 5.16038 5.27547 5.28847 5.52042 5.64896 5.81987 5.83616 5.97904 6.01577 6.09166 6.17136 6.18809 6.22360 6.24790 6.38042 6.39680 6.46856 6.51824 6.68799 6.73193 6.75931 6.88697 7.03052 7.14388 7.30713 7.45280 7.49265 7.82121 8.00706 8.05375 8.23144 8.35013 8.74523 9.18188 9.73159 11.17554 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.027081 B = 0.010337 C = 0.009297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.689227 B = 2707.957250 C = 3010.934447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.059 3.941 3 N -0.502 5.502 4 C 0.097 3.903 5 C 0.033 3.967 6 C -0.437 4.437 7 H 0.065 0.935 8 C 0.050 3.950 9 N -0.887 5.887 10 Si 0.890 3.110 11 H -0.274 1.274 12 H -0.288 1.288 13 H -0.289 1.289 14 C -0.185 4.185 15 C -0.197 4.197 16 C 0.098 3.902 17 C -0.177 4.177 18 C -0.137 4.137 19 C -0.138 4.138 20 H 0.029 0.971 21 H 0.082 0.918 22 H 0.072 0.928 23 H 0.058 0.942 24 H 0.021 0.979 25 H 0.064 0.936 26 H 0.011 0.989 27 H 0.254 0.746 28 H 0.109 0.891 29 H 0.037 0.963 30 H 0.035 0.965 31 H 0.109 0.891 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.054 0.946 35 H 0.065 0.935 36 H 0.050 0.950 37 H 0.051 0.949 38 H 0.060 0.940 39 H 0.047 0.953 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.713 -5.004 -4.515 11.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.069 4.069 3 N -0.225 5.225 4 C -0.030 4.030 5 C 0.032 3.968 6 C -0.474 4.474 7 H 0.083 0.917 8 C -0.149 4.149 9 N -0.527 5.527 10 Si 0.719 3.281 11 H -0.198 1.198 12 H -0.214 1.214 13 H -0.215 1.215 14 C -0.223 4.223 15 C -0.236 4.236 16 C 0.008 3.992 17 C -0.236 4.236 18 C -0.195 4.195 19 C -0.195 4.195 20 H 0.048 0.952 21 H 0.100 0.900 22 H 0.091 0.909 23 H 0.076 0.924 24 H 0.039 0.961 25 H 0.082 0.918 26 H 0.029 0.971 27 H 0.064 0.936 28 H 0.127 0.873 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.127 0.873 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.066 0.934 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 8.209 -4.672 -4.727 10.562 hybrid contribution 0.022 0.015 0.059 0.065 sum 8.231 -4.657 -4.667 10.546 Atomic orbital electron populations 1.22133 0.94452 0.99791 1.05139 1.22096 0.97138 0.88959 0.98709 1.62167 1.22205 1.18740 1.19426 1.21795 0.98245 0.96563 0.86426 1.18931 0.90405 0.97265 0.90182 1.20565 0.99720 1.22105 1.05051 0.91656 1.25010 0.97521 0.96961 0.95417 1.70031 1.13721 1.44414 1.24582 0.86557 0.79312 0.80880 0.81344 1.19835 1.21435 1.21536 1.22774 1.01987 0.89743 1.07770 1.22899 1.01919 1.02652 0.96084 1.21096 0.88712 0.95270 0.94080 1.22542 0.99724 1.00406 1.00950 1.21901 1.01473 1.00454 0.95634 1.21900 0.99977 0.95323 1.02320 0.95242 0.89978 0.90873 0.92354 0.96096 0.91754 0.97052 0.93611 0.87268 0.94505 0.94619 0.87298 0.93035 0.92983 0.92674 0.91573 0.93064 0.92963 0.92161 0.93385 0.91499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.06 9.15 37.16 0.34 -2.72 16 2 C 0.06 1.05 4.42 -3.83 -0.02 1.03 16 3 N -0.50 -9.45 3.78 -218.98 -0.83 -10.28 16 4 C 0.10 2.01 3.61 -3.83 -0.01 1.99 16 5 C 0.03 0.80 1.58 -155.66 -0.25 0.56 16 6 C -0.44 -11.66 8.84 -34.44 -0.30 -11.97 16 7 H 0.07 1.78 7.81 -52.49 -0.41 1.37 16 8 C 0.05 1.36 5.27 -17.82 -0.09 1.27 16 9 N -0.89 -24.76 8.59 55.43 0.48 -24.28 16 10 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 11 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 13 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 14 C -0.19 -4.54 6.28 -26.70 -0.17 -4.71 16 15 C -0.20 -4.93 9.38 -26.70 -0.25 -5.19 16 16 C 0.10 1.54 0.70 -131.60 -0.09 1.44 16 17 C -0.18 -2.48 7.97 37.16 0.30 -2.18 16 18 C -0.14 -1.90 8.07 37.16 0.30 -1.60 16 19 C -0.14 -2.12 8.30 37.16 0.31 -1.81 16 20 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 21 H 0.08 1.75 3.83 -51.93 -0.20 1.55 16 22 H 0.07 1.60 8.10 -51.93 -0.42 1.18 16 23 H 0.06 0.92 5.41 -51.93 -0.28 0.64 16 24 H 0.02 0.37 7.28 -51.93 -0.38 0.00 16 25 H 0.06 1.31 5.38 -51.93 -0.28 1.04 16 26 H 0.01 0.23 7.12 -51.93 -0.37 -0.14 16 27 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 28 H 0.11 2.98 6.25 -51.93 -0.32 2.66 16 29 H 0.04 0.85 7.44 -51.93 -0.39 0.46 16 30 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.11 3.01 6.30 -51.93 -0.33 2.68 16 32 H 0.05 0.71 7.15 -51.93 -0.37 0.34 16 33 H 0.05 0.63 8.14 -51.92 -0.42 0.21 16 34 H 0.05 0.81 7.06 -51.93 -0.37 0.44 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.05 0.69 6.24 -51.93 -0.32 0.36 16 38 H 0.06 0.97 5.94 -51.93 -0.31 0.66 16 39 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 293.43 15.07 4.42 4.42 Total: -1.00 -27.10 293.43 -7.73 -34.83 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -6.84 Total: 2.77 kcal Atomic # 6 Polarization: -23.94 SS G_CDS: 0.06 Total: -23.88 kcal Atomic # 7 Polarization: -34.21 SS G_CDS: -0.35 Total: -34.57 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -27.10 -7.73 -34.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382150331.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.695 kcal (2) G-P(sol) polarization free energy of solvation -27.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds