Wall clock time and date at job start Sun Mar 29 2020 21:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46893 * 109.47488 * 2 1 4 4 C 1.46897 * 111.00182 * 84.43715 * 3 2 1 5 5 C 1.53000 * 109.47298 * 277.80763 * 4 3 2 6 6 C 1.50702 * 115.54867 * 307.00396 * 5 4 3 7 7 H 1.07995 * 120.00027 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99803 * 179.72306 * 6 5 4 9 9 N 1.31514 * 120.00095 * 0.27758 * 8 6 5 10 10 Si 1.86797 * 119.99765 * 180.27852 * 8 6 5 11 11 H 1.48503 * 109.47245 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47522 * 120.00152 * 10 8 6 13 13 H 1.48507 * 109.47145 * 239.99891 * 10 8 6 14 14 C 1.52995 * 117.50001 * 92.67488 * 5 4 3 15 15 C 1.52999 * 117.50186 * 161.33255 * 5 4 3 16 16 C 1.46897 * 111.00212 * 208.39349 * 3 2 1 17 17 C 1.53004 * 109.46864 * 297.35171 * 16 3 2 18 18 C 1.52995 * 109.47350 * 57.34739 * 16 3 2 19 19 C 1.52997 * 109.47510 * 177.35346 * 16 3 2 20 20 H 1.08992 * 109.47243 * 157.02252 * 1 2 3 21 21 H 1.08999 * 109.46841 * 277.02372 * 1 2 3 22 22 H 1.08998 * 109.47047 * 37.02134 * 1 2 3 23 23 H 1.09007 * 109.46695 * 239.99638 * 2 1 3 24 24 H 1.09005 * 109.47089 * 120.00442 * 2 1 3 25 25 H 1.09004 * 109.47422 * 157.80495 * 4 3 2 26 26 H 1.09002 * 109.46847 * 37.80515 * 4 3 2 27 27 H 0.97000 * 120.00029 * 180.02562 * 9 8 6 28 28 H 1.08999 * 117.50302 * 215.00526 * 14 5 4 29 29 H 1.09002 * 117.49939 * 0.02562 * 14 5 4 30 30 H 1.09005 * 117.49772 * 359.97438 * 15 5 4 31 31 H 1.09005 * 117.49896 * 144.97174 * 15 5 4 32 32 H 1.08994 * 109.47685 * 59.99776 * 17 16 3 33 33 H 1.09009 * 109.47231 * 179.97438 * 17 16 3 34 34 H 1.08999 * 109.47204 * 299.99278 * 17 16 3 35 35 H 1.08996 * 109.47254 * 52.66995 * 18 16 3 36 36 H 1.09000 * 109.47591 * 172.67363 * 18 16 3 37 37 H 1.08999 * 109.47692 * 292.67407 * 18 16 3 38 38 H 1.08995 * 109.47632 * 59.99575 * 19 16 3 39 39 H 1.09003 * 109.47358 * 180.02562 * 19 16 3 40 40 H 1.09004 * 109.46825 * 299.99530 * 19 16 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 2.0699 1.9256 1.3649 5 6 0.6790 2.4173 1.7702 6 6 0.0270 3.3830 0.8145 7 1 0.5422 3.6821 -0.0863 8 6 -1.2299 3.8799 1.0870 9 7 -1.8575 3.5154 2.1837 10 14 -2.0412 5.0709 -0.1015 11 1 -1.1333 5.3197 -1.2500 12 1 -3.3151 4.4880 -0.5942 13 1 -2.3201 6.3525 0.5951 14 6 -0.2299 1.4342 2.5108 15 6 0.4039 2.6068 3.2633 16 6 3.3327 1.4790 -0.6521 17 6 4.3536 0.6556 0.1357 18 6 3.2332 0.9375 -2.0796 19 6 3.7789 2.9420 -0.6916 20 1 -0.3633 -0.9460 -0.4011 21 1 -0.3633 0.1257 1.0200 22 1 -0.3633 0.8205 -0.6188 23 1 1.8933 -0.5139 -0.8900 24 1 1.8934 -0.5139 0.8900 25 1 2.7740 2.7570 1.4008 26 1 2.3942 1.1450 2.0532 27 1 -2.7420 3.8647 2.3753 28 1 -1.2993 1.4859 2.3067 29 1 0.1633 0.4373 2.7096 30 1 1.2138 2.3808 3.9569 31 1 -0.2483 3.4303 3.5543 32 1 4.0358 -0.3866 0.1639 33 1 5.3278 0.7250 -0.3485 34 1 4.4246 1.0414 1.1526 35 1 2.4164 1.4362 -2.6013 36 1 4.1690 1.1256 -2.6057 37 1 3.0431 -0.1354 -2.0488 38 1 3.8498 3.3278 0.3253 39 1 4.7529 3.0118 -1.1759 40 1 3.0516 3.5286 -1.2529 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382150331.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:54 Heat of formation + Delta-G solvation = 26.572491 kcal Electronic energy + Delta-G solvation = -17241.504951 eV Core-core repulsion = 14864.232587 eV Total energy + Delta-G solvation = -2377.272364 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.36834 -37.90676 -34.15129 -33.24595 -31.04365 -28.32563 -28.09537 -27.60628 -25.80307 -23.23243 -22.31634 -20.80379 -19.44901 -17.87532 -17.03820 -16.78004 -15.72534 -15.21896 -15.16451 -14.81163 -14.71448 -14.30998 -13.56581 -13.23110 -13.06831 -12.97922 -12.91663 -12.61965 -12.52985 -12.40473 -12.31327 -12.18403 -11.89072 -11.85376 -11.76723 -11.44040 -11.24499 -11.19649 -10.58451 -10.04490 -9.82440 -8.82446 -7.87568 -5.93259 1.42085 1.46050 1.56333 2.51249 3.04809 3.27811 3.95879 4.07226 4.12850 4.29382 4.40766 4.50454 4.57214 4.68200 4.75315 4.79862 4.82724 4.90270 4.91855 4.96501 5.02447 5.08226 5.10665 5.15848 5.22820 5.32035 5.36731 5.40972 5.51126 5.54779 5.60011 5.75729 5.86302 6.06650 6.28405 6.51558 6.66765 6.72615 7.09472 7.61459 9.06785 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.027081 B = 0.010337 C = 0.009297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.689227 B = 2707.957250 C = 3010.934447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.063 3.937 3 N -0.521 5.521 4 C 0.109 3.891 5 C 0.029 3.971 6 C -0.444 4.444 7 H 0.056 0.944 8 C 0.006 3.994 9 N -0.908 5.908 10 Si 0.946 3.054 11 H -0.270 1.270 12 H -0.289 1.289 13 H -0.288 1.288 14 C -0.171 4.171 15 C -0.205 4.205 16 C 0.093 3.907 17 C -0.170 4.170 18 C -0.132 4.132 19 C -0.135 4.135 20 H 0.054 0.946 21 H 0.058 0.942 22 H 0.041 0.959 23 H 0.083 0.917 24 H 0.024 0.976 25 H 0.065 0.935 26 H 0.016 0.984 27 H 0.251 0.749 28 H 0.079 0.921 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.079 0.921 32 H 0.054 0.946 33 H 0.075 0.925 34 H 0.044 0.956 35 H 0.048 0.952 36 H 0.075 0.925 37 H 0.060 0.940 38 H 0.047 0.953 39 H 0.077 0.923 40 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.447 -5.891 -5.690 13.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.065 4.065 3 N -0.245 5.245 4 C -0.019 4.019 5 C 0.028 3.972 6 C -0.482 4.482 7 H 0.074 0.926 8 C -0.191 4.191 9 N -0.548 5.548 10 Si 0.774 3.226 11 H -0.194 1.194 12 H -0.215 1.215 13 H -0.215 1.215 14 C -0.209 4.209 15 C -0.243 4.243 16 C 0.003 3.997 17 C -0.229 4.229 18 C -0.190 4.190 19 C -0.193 4.193 20 H 0.072 0.928 21 H 0.077 0.923 22 H 0.061 0.939 23 H 0.101 0.899 24 H 0.042 0.958 25 H 0.084 0.916 26 H 0.034 0.966 27 H 0.060 0.940 28 H 0.097 0.903 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.098 0.902 32 H 0.073 0.927 33 H 0.094 0.906 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.094 0.906 37 H 0.079 0.921 38 H 0.066 0.934 39 H 0.095 0.905 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 9.954 -5.559 -5.910 12.842 hybrid contribution -0.517 0.290 0.409 0.720 sum 9.437 -5.269 -5.501 12.128 Atomic orbital electron populations 1.22035 0.96012 0.99856 1.03041 1.22077 0.95711 0.88730 0.99985 1.62045 1.24818 1.19436 1.18186 1.21557 0.95665 0.96799 0.87852 1.19083 0.92208 0.96648 0.89215 1.20730 0.99868 1.22526 1.05077 0.92581 1.25630 0.98224 0.98510 0.96758 1.70180 1.13704 1.45219 1.25717 0.85687 0.78260 0.79013 0.79688 1.19424 1.21542 1.21473 1.22527 1.00301 0.90376 1.07708 1.22812 1.02250 1.02090 0.97178 1.21256 0.87552 0.95813 0.95043 1.22450 1.00267 0.99982 1.00202 1.21864 1.02195 1.00615 0.94283 1.21886 1.00933 0.94961 1.01499 0.92752 0.92280 0.93938 0.89903 0.95789 0.91646 0.96615 0.93966 0.90254 0.92824 0.92614 0.90224 0.92676 0.90643 0.93711 0.93254 0.90584 0.92069 0.93392 0.90461 0.93591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.78 9.15 71.98 0.66 -5.12 16 2 C 0.06 2.10 4.42 86.31 0.38 2.48 16 3 N -0.52 -18.87 3.78 -846.72 -3.20 -22.08 16 4 C 0.11 4.41 3.61 86.30 0.31 4.72 16 5 C 0.03 1.44 1.58 -52.93 -0.08 1.35 16 6 C -0.44 -24.02 8.84 25.60 0.23 -23.80 16 7 H 0.06 3.08 7.81 -2.91 -0.02 3.06 16 8 C 0.01 0.32 5.27 84.65 0.45 0.76 16 9 N -0.91 -51.87 8.59 21.45 0.18 -51.68 16 10 Si 0.95 44.70 29.54 68.60 2.03 46.73 16 11 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 12 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 13 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 14 C -0.17 -8.49 6.28 30.61 0.19 -8.29 16 15 C -0.20 -10.34 9.38 30.62 0.29 -10.05 16 16 C 0.09 2.65 0.70 3.53 0.00 2.65 16 17 C -0.17 -4.17 7.97 71.98 0.57 -3.60 16 18 C -0.13 -3.24 8.07 71.98 0.58 -2.66 16 19 C -0.14 -3.90 8.30 71.98 0.60 -3.30 16 20 H 0.05 1.73 8.14 -2.39 -0.02 1.72 16 21 H 0.06 2.51 3.83 -2.39 -0.01 2.50 16 22 H 0.04 1.85 8.10 -2.39 -0.02 1.83 16 23 H 0.08 2.36 5.41 -2.38 -0.01 2.35 16 24 H 0.02 0.80 7.28 -2.38 -0.02 0.78 16 25 H 0.07 2.62 5.38 -2.38 -0.01 2.61 16 26 H 0.02 0.62 7.12 -2.39 -0.02 0.60 16 27 H 0.25 13.92 8.31 -92.71 -0.77 13.15 16 28 H 0.08 4.45 6.25 -2.39 -0.01 4.43 16 29 H 0.05 2.44 7.44 -2.39 -0.02 2.42 16 30 H 0.06 2.54 8.14 -2.38 -0.02 2.52 16 31 H 0.08 4.51 6.30 -2.38 -0.02 4.50 16 32 H 0.05 1.31 7.15 -2.39 -0.02 1.30 16 33 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 34 H 0.04 1.19 7.06 -2.39 -0.02 1.17 16 35 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.06 1.38 6.24 -2.39 -0.01 1.36 16 38 H 0.05 1.48 5.94 -2.39 -0.01 1.46 16 39 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 Total: -1.00 -58.28 293.43 4.18 -54.11 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: 0.99 Total: 17.77 kcal Atomic # 6 Polarization: -49.02 SS G_CDS: 4.18 Total: -44.84 kcal Atomic # 7 Polarization: -70.74 SS G_CDS: -3.02 Total: -73.76 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -58.28 4.18 -54.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382150331.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.678 kcal (2) G-P(sol) polarization free energy of solvation -58.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds