Wall clock time and date at job start Sun Mar 29 2020 21:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36935 * 120.00412 * 2 1 4 4 H 1.07996 * 119.99735 * 200.36107 * 3 2 1 5 5 C 1.38812 * 119.99796 * 20.36159 * 3 2 1 6 6 N 1.31612 * 120.00018 * 14.98532 * 5 3 2 7 7 Si 1.86809 * 119.99710 * 194.99066 * 5 3 2 8 8 H 1.48491 * 109.47051 * 85.00162 * 7 5 3 9 9 H 1.48501 * 109.46846 * 205.00378 * 7 5 3 10 10 H 1.48497 * 109.46743 * 325.00012 * 7 5 3 11 11 C 1.46505 * 119.99437 * 179.97438 * 2 1 3 12 12 C 1.53004 * 109.46989 * 269.99887 * 11 2 1 13 13 C 1.52999 * 109.46867 * 180.02562 * 12 11 2 14 14 C 1.54063 * 108.87896 * 297.97451 * 13 12 11 15 15 C 1.54060 * 112.81955 * 197.50416 * 14 13 12 16 16 C 1.50475 * 112.50114 * 318.28745 * 15 14 13 17 17 C 1.54243 * 108.51589 * 94.14886 * 16 15 14 18 18 C 1.45540 * 112.40895 * 280.01072 * 17 16 15 19 19 C 1.50476 * 108.87475 * 174.99854 * 13 12 11 20 20 H 1.08998 * 109.47161 * 275.09810 * 1 2 3 21 21 H 1.09002 * 109.46623 * 35.09808 * 1 2 3 22 22 H 1.08996 * 109.47824 * 155.09317 * 1 2 3 23 23 H 0.96998 * 119.99763 * 180.02562 * 6 5 3 24 24 H 1.08996 * 109.46821 * 150.00016 * 11 2 1 25 25 H 1.08993 * 109.47216 * 30.00149 * 11 2 1 26 26 H 1.08996 * 109.46709 * 60.00363 * 12 11 2 27 27 H 1.09001 * 109.47164 * 300.00315 * 12 11 2 28 28 H 1.08996 * 108.85181 * 56.44158 * 13 12 11 29 29 H 1.08998 * 108.81337 * 318.36961 * 14 13 12 30 30 H 1.09004 * 108.81308 * 76.75630 * 14 13 12 31 31 H 1.09006 * 108.87953 * 197.50697 * 15 14 13 32 32 H 1.09005 * 108.87563 * 79.06661 * 15 14 13 33 33 H 1.08994 * 109.62414 * 334.43985 * 16 15 14 34 34 H 1.09002 * 109.62635 * 213.85679 * 16 15 14 35 35 H 1.08994 * 108.89823 * 40.76812 * 17 16 15 36 36 H 1.09004 * 108.89219 * 159.35373 * 17 16 15 37 37 H 1.08994 * 108.89846 * 182.69786 * 18 17 16 38 38 H 1.09004 * 108.89428 * 301.18836 * 18 17 16 39 39 H 1.09005 * 109.62376 * 95.21541 * 19 13 12 40 40 H 1.08993 * 109.78997 * 334.73544 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1791 1.2149 -0.3254 5 6 1.5208 2.3505 0.4183 6 7 0.3876 2.2836 1.0844 7 14 2.2827 4.0126 0.0355 8 1 1.8685 4.4459 -1.3230 9 1 1.8226 5.0099 1.0350 10 1 3.7626 3.9031 0.0905 11 6 2.1974 -1.2688 0.0006 12 6 2.4523 -1.7099 1.4433 13 6 3.2178 -3.0346 1.4439 14 6 2.3525 -4.1106 0.7604 15 6 2.8195 -5.5438 1.0785 16 6 4.3178 -5.6809 1.0502 17 6 4.8538 -5.4944 2.4845 18 6 4.9435 -4.0926 2.8654 19 6 3.5686 -3.3935 2.8625 20 1 -0.3633 0.0913 1.0236 21 1 -0.3632 0.8408 -0.5909 22 1 -0.3634 -0.9320 -0.4328 23 1 -0.0520 3.0974 1.3764 24 1 3.1498 -1.1388 -0.5133 25 1 1.6083 -2.0286 -0.5129 26 1 1.4999 -1.8399 1.9571 27 1 3.0415 -0.9500 1.9568 28 1 4.1383 -2.9098 0.8737 29 1 1.3208 -3.9952 1.0925 30 1 2.3927 -3.9608 -0.3186 31 1 2.3891 -6.2260 0.3453 32 1 2.4587 -5.8206 2.0692 33 1 4.7429 -4.9178 0.3983 34 1 4.5880 -6.6714 0.6842 35 1 4.1889 -6.0072 3.1793 36 1 5.8459 -5.9410 2.5513 37 1 5.3716 -4.0252 3.8655 38 1 5.6025 -3.5782 2.1659 39 1 2.8139 -4.0682 3.2668 40 1 3.6158 -2.4903 3.4707 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589158340.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:22 Heat of formation + Delta-G solvation = -27.246305 kcal Electronic energy + Delta-G solvation = -16264.028002 eV Core-core repulsion = 13884.421880 eV Total energy + Delta-G solvation = -2379.606122 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.10096 -37.63344 -34.97392 -33.09546 -32.94321 -29.65489 -27.91400 -26.14087 -25.50796 -23.54459 -22.06642 -21.28136 -19.77430 -18.72425 -16.87299 -16.50339 -16.08276 -15.71995 -15.35529 -15.00308 -14.71883 -14.53712 -13.99618 -13.75637 -13.38263 -13.25481 -13.00285 -12.77582 -12.74530 -12.42542 -12.26211 -12.05603 -12.01886 -11.67917 -11.52394 -11.41110 -11.16794 -11.04975 -10.98774 -10.89350 -10.60953 -8.78887 -7.82503 -5.27758 1.45260 1.47277 1.55388 2.51778 3.30334 3.67106 3.77407 3.85658 4.06414 4.22980 4.28088 4.41761 4.46326 4.51087 4.55055 4.66264 4.80221 4.82623 4.89732 4.93196 4.99291 5.10521 5.22478 5.28558 5.32063 5.33617 5.35041 5.39566 5.44336 5.46836 5.52373 5.56170 5.64645 5.66522 5.70767 5.73833 6.33410 7.15742 7.89759 8.32780 9.21706 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.043666 B = 0.005804 C = 0.005477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.079235 B = 4823.247146 C = 5111.001067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.624 5.624 3 C -0.261 4.261 4 H 0.070 0.930 5 C -0.057 4.057 6 N -0.941 5.941 7 Si 0.969 3.031 8 H -0.284 1.284 9 H -0.295 1.295 10 H -0.269 1.269 11 C 0.150 3.850 12 C -0.118 4.118 13 C -0.072 4.072 14 C -0.108 4.108 15 C -0.113 4.113 16 C -0.117 4.117 17 C -0.114 4.114 18 C -0.114 4.114 19 C -0.110 4.110 20 H 0.001 0.999 21 H 0.015 0.985 22 H 0.030 0.970 23 H 0.247 0.753 24 H 0.041 0.959 25 H 0.057 0.943 26 H 0.034 0.966 27 H 0.029 0.971 28 H 0.064 0.936 29 H 0.048 0.952 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.061 0.939 38 H 0.054 0.946 39 H 0.065 0.935 40 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.261 -16.382 1.154 17.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.347 5.347 3 C -0.391 4.391 4 H 0.087 0.913 5 C -0.252 4.252 6 N -0.589 5.589 7 Si 0.797 3.203 8 H -0.211 1.211 9 H -0.221 1.221 10 H -0.194 1.194 11 C 0.025 3.975 12 C -0.159 4.159 13 C -0.091 4.091 14 C -0.146 4.146 15 C -0.151 4.151 16 C -0.155 4.155 17 C -0.152 4.152 18 C -0.152 4.152 19 C -0.148 4.148 20 H 0.019 0.981 21 H 0.034 0.966 22 H 0.048 0.952 23 H 0.056 0.944 24 H 0.059 0.941 25 H 0.075 0.925 26 H 0.053 0.947 27 H 0.048 0.952 28 H 0.082 0.918 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.084 0.916 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 7.164 -16.266 1.192 17.813 hybrid contribution -0.079 1.451 0.106 1.456 sum 7.085 -14.815 1.298 16.474 Atomic orbital electron populations 1.20509 0.82928 0.95805 0.97431 1.44303 1.02189 1.02054 1.86170 1.19554 0.97098 0.86380 1.36079 0.91269 1.25749 0.98695 1.01724 0.99029 1.70257 1.20378 1.27082 1.41154 0.85255 0.78279 0.79670 0.77115 1.21100 1.22125 1.19430 1.21051 0.95257 0.86344 0.94870 1.22185 0.98634 0.96091 0.98955 1.20864 0.98234 0.93430 0.96587 1.21953 0.98534 0.94149 0.99961 1.21319 0.96454 0.95446 1.01838 1.21352 0.95418 1.01820 0.96888 1.20472 1.01618 0.96276 0.96792 1.20453 0.96366 0.96822 1.01509 1.21379 0.97741 0.99729 0.95957 0.98111 0.96614 0.95179 0.94376 0.94071 0.92508 0.94684 0.95174 0.91778 0.93275 0.92374 0.91653 0.92158 0.92302 0.90862 0.91969 0.91478 0.91994 0.92709 0.91632 0.93543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.30 9.02 127.77 1.15 10.46 16 2 N -0.62 -32.95 2.93 -726.95 -2.13 -35.07 16 3 C -0.26 -14.96 9.68 84.03 0.81 -14.14 16 4 H 0.07 3.86 7.86 -2.91 -0.02 3.83 16 5 C -0.06 -3.34 5.06 84.86 0.43 -2.91 16 6 N -0.94 -57.80 10.67 21.65 0.23 -57.57 16 7 Si 0.97 46.46 29.58 68.60 2.03 48.49 16 8 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 9 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 10 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 11 C 0.15 6.33 5.43 86.38 0.47 6.80 16 12 C -0.12 -4.60 4.74 30.60 0.15 -4.45 16 13 C -0.07 -2.08 1.71 -11.25 -0.02 -2.10 16 14 C -0.11 -2.73 4.42 31.31 0.14 -2.59 16 15 C -0.11 -2.23 5.31 30.14 0.16 -2.07 16 16 C -0.12 -2.11 5.61 30.20 0.17 -1.94 16 17 C -0.11 -2.01 5.26 28.74 0.15 -1.86 16 18 C -0.11 -2.40 5.26 28.73 0.15 -2.25 16 19 C -0.11 -2.87 5.13 30.20 0.15 -2.72 16 20 H 0.00 0.03 7.40 -2.39 -0.02 0.02 16 21 H 0.02 0.86 7.21 -2.39 -0.02 0.84 16 22 H 0.03 1.33 7.84 -2.39 -0.02 1.31 16 23 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 24 H 0.04 1.70 8.03 -2.39 -0.02 1.68 16 25 H 0.06 2.15 6.55 -2.39 -0.02 2.13 16 26 H 0.03 1.45 8.07 -2.39 -0.02 1.43 16 27 H 0.03 1.32 7.96 -2.39 -0.02 1.30 16 28 H 0.06 1.84 6.63 -2.39 -0.02 1.83 16 29 H 0.05 1.33 7.93 -2.39 -0.02 1.31 16 30 H 0.06 1.47 7.36 -2.38 -0.02 1.45 16 31 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 32 H 0.06 1.16 6.63 -2.38 -0.02 1.15 16 33 H 0.06 1.17 6.97 -2.39 -0.02 1.15 16 34 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.06 1.05 7.47 -2.39 -0.02 1.03 16 36 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.05 1.21 7.47 -2.38 -0.02 1.19 16 39 H 0.06 1.62 6.98 -2.38 -0.02 1.60 16 40 H 0.05 1.35 7.60 -2.39 -0.02 1.33 16 Total: -1.00 -63.74 297.96 5.01 -58.73 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: 0.97 Total: 5.21 kcal Atomic # 6 Polarization: -23.70 SS G_CDS: 3.91 Total: -19.78 kcal Atomic # 7 Polarization: -90.75 SS G_CDS: -1.90 Total: -92.65 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.49 kcal Total: -63.74 5.01 -58.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589158340.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.483 kcal (2) G-P(sol) polarization free energy of solvation -63.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds