Wall clock time and date at job start Sun Mar 29 2020 21:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46903 * 109.46763 * 2 1 4 4 C 1.46894 * 111.00478 * 297.54389 * 3 2 1 5 5 C 1.50707 * 109.47300 * 292.80033 * 4 3 2 6 6 H 1.08001 * 119.99274 * 354.98095 * 5 4 3 7 7 C 1.37873 * 120.00208 * 174.98544 * 5 4 3 8 8 N 1.31512 * 119.99949 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99852 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47112 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47116 * 119.99792 * 9 7 5 12 12 H 1.48492 * 109.47372 * 239.99803 * 9 7 5 13 13 C 1.46901 * 111.00104 * 61.49876 * 3 2 1 14 14 C 1.52997 * 109.47009 * 66.04135 * 13 3 2 15 15 C 1.53006 * 109.47190 * 180.02562 * 14 13 3 16 16 C 1.53004 * 109.47221 * 180.02562 * 15 14 13 17 17 C 1.53777 * 113.61025 * 274.13400 * 16 15 14 18 18 C 1.53956 * 87.01722 * 220.04719 * 17 16 15 19 19 C 1.53776 * 113.61378 * 176.52587 * 16 15 14 20 20 H 1.09003 * 109.47753 * 59.50346 * 1 2 3 21 21 H 1.09003 * 109.47076 * 179.50526 * 1 2 3 22 22 H 1.09000 * 109.47658 * 299.50104 * 1 2 3 23 23 H 1.09006 * 109.47088 * 240.00526 * 2 1 3 24 24 H 1.08993 * 109.47164 * 120.00106 * 2 1 3 25 25 H 1.09003 * 109.47375 * 52.79312 * 4 3 2 26 26 H 1.08994 * 109.47929 * 172.79330 * 4 3 2 27 27 H 0.97008 * 119.99761 * 179.97438 * 8 7 5 28 28 H 1.09003 * 109.46691 * 306.04725 * 13 3 2 29 29 H 1.08996 * 109.47305 * 186.04683 * 13 3 2 30 30 H 1.08996 * 109.47534 * 300.00407 * 14 13 3 31 31 H 1.08999 * 109.47023 * 60.00225 * 14 13 3 32 32 H 1.09004 * 109.46872 * 299.99722 * 15 14 13 33 33 H 1.08999 * 109.47325 * 59.99955 * 15 14 13 34 34 H 1.08995 * 112.84919 * 45.32862 * 16 15 14 35 35 H 1.09004 * 113.61629 * 334.56728 * 17 16 15 36 36 H 1.09002 * 113.61506 * 105.47125 * 17 16 15 37 37 H 1.08992 * 113.54044 * 270.80769 * 18 17 16 38 38 H 1.08999 * 113.66440 * 139.93252 * 18 17 16 39 39 H 1.08997 * 113.61714 * 254.53175 * 19 16 15 40 40 H 1.09005 * 113.61353 * 25.34825 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0195 1.3850 0.0000 4 6 1.5971 2.0928 -1.2159 5 6 2.2903 1.4936 -2.4125 6 1 3.0361 0.7246 -2.2753 7 6 1.9724 1.9272 -3.6820 8 7 1.0639 2.8633 -3.8489 9 14 2.8321 1.1849 -5.1651 10 1 3.8043 0.1582 -4.7111 11 1 1.8257 0.5533 -6.0559 12 1 3.5493 2.2525 -5.9072 13 6 1.5780 2.0995 1.2052 14 6 2.2402 1.4793 2.4371 15 6 1.7799 2.2230 3.6925 16 6 2.4426 1.6031 4.9244 17 6 1.6785 0.3958 5.4929 18 6 2.0096 0.9470 6.8918 19 6 2.1108 2.3343 6.2359 20 1 -0.3635 0.5215 -0.8855 21 1 -0.3633 -1.0277 -0.0089 22 1 -0.3634 0.5060 0.8944 23 1 1.8933 -0.5138 -0.8901 24 1 1.8933 -0.5138 0.8899 25 1 0.5179 1.9971 -1.3357 26 1 1.8614 3.1470 -1.1331 27 1 0.8405 3.1686 -4.7422 28 1 0.4946 2.0217 1.2972 29 1 1.8618 3.1492 1.1298 30 1 1.9564 0.4296 2.5125 31 1 3.3235 1.5570 2.3451 32 1 2.0635 3.2728 3.6174 33 1 0.6966 2.1450 3.7843 34 1 3.5078 1.4192 4.7845 35 1 0.6135 0.4045 5.2610 36 1 2.1520 -0.5619 5.2767 37 1 2.9562 0.5825 7.2905 38 1 1.1879 0.8590 7.6025 39 1 2.9326 2.9393 6.6185 40 1 1.1648 2.8751 6.2070 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595331618.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:16 Heat of formation + Delta-G solvation = -17.094297 kcal Electronic energy + Delta-G solvation = -15740.984367 eV Core-core repulsion = 13361.818469 eV Total energy + Delta-G solvation = -2379.165898 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.92313 -38.94389 -35.01812 -33.89223 -31.04981 -29.43920 -27.10367 -26.39471 -25.12770 -24.06979 -22.14337 -20.69257 -20.05868 -18.36044 -17.05494 -16.70523 -16.47836 -16.06933 -15.51539 -15.28632 -14.67304 -14.42517 -13.77020 -13.56290 -13.30646 -13.25058 -13.13219 -12.95642 -12.68293 -12.59174 -12.45071 -12.24331 -11.98114 -11.82126 -11.72410 -11.39455 -11.27700 -11.20977 -10.90174 -10.71596 -10.59451 -8.87715 -8.18555 -6.28277 1.40396 1.41015 1.54811 2.41056 3.13621 3.35972 3.77581 3.85211 3.89885 4.03147 4.14599 4.30909 4.34654 4.45951 4.54353 4.61065 4.74807 4.79457 4.87862 4.89176 4.94254 4.95317 5.03045 5.05959 5.12112 5.14297 5.17665 5.23122 5.34807 5.39377 5.45384 5.54506 5.55055 5.69559 5.72804 6.10688 6.41731 6.72686 6.89575 7.41404 8.92261 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.056683 B = 0.004614 C = 0.004543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.853640 B = 6066.439331 C = 6161.824972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.060 3.940 3 N -0.546 5.546 4 C 0.202 3.798 5 C -0.518 4.518 6 H 0.060 0.940 7 C 0.000 4.000 8 N -0.936 5.936 9 Si 0.968 3.032 10 H -0.263 1.263 11 H -0.278 1.278 12 H -0.279 1.279 13 C 0.051 3.949 14 C -0.098 4.098 15 C -0.102 4.102 16 C -0.111 4.111 17 C -0.140 4.140 18 C -0.139 4.139 19 C -0.138 4.138 20 H 0.029 0.971 21 H 0.072 0.928 22 H 0.058 0.942 23 H 0.056 0.944 24 H 0.084 0.916 25 H -0.021 1.021 26 H -0.007 1.007 27 H 0.263 0.737 28 H 0.026 0.974 29 H 0.050 0.950 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.065 0.935 37 H 0.084 0.916 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.641 -4.591 18.320 18.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.068 4.068 3 N -0.270 5.270 4 C 0.075 3.925 5 C -0.557 4.557 6 H 0.078 0.922 7 C -0.197 4.197 8 N -0.577 5.577 9 Si 0.792 3.208 10 H -0.188 1.188 11 H -0.204 1.204 12 H -0.204 1.204 13 C -0.077 4.077 14 C -0.136 4.136 15 C -0.140 4.140 16 C -0.129 4.129 17 C -0.177 4.177 18 C -0.176 4.176 19 C -0.175 4.175 20 H 0.048 0.952 21 H 0.091 0.909 22 H 0.077 0.923 23 H 0.075 0.925 24 H 0.103 0.897 25 H -0.004 1.004 26 H 0.011 0.989 27 H 0.072 0.928 28 H 0.044 0.956 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.105 0.895 35 H 0.097 0.903 36 H 0.083 0.917 37 H 0.102 0.898 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.080 -4.503 18.196 18.775 hybrid contribution -0.732 0.164 -1.252 1.459 sum 0.348 -4.338 16.944 17.494 Atomic orbital electron populations 1.22262 0.98614 1.02149 1.00693 1.22005 0.92807 0.90369 1.01588 1.62245 1.59686 1.02861 1.02180 1.19431 0.93086 0.92387 0.87559 1.21492 1.21652 1.21242 0.91289 0.92191 1.25901 0.95973 0.95618 1.02233 1.70099 1.33656 1.30746 1.23186 0.85357 0.78429 0.78413 0.78563 1.18751 1.20396 1.20442 1.22171 0.97125 0.97541 0.90867 1.21448 1.00177 0.99708 0.92262 1.21489 0.99992 0.99252 0.93238 1.22547 0.99807 0.97067 0.93526 1.23021 1.00386 0.97713 0.96589 1.22832 1.02139 0.96334 0.96292 1.22950 1.01976 0.96735 0.95872 0.95162 0.90870 0.92316 0.92528 0.89739 1.00358 0.98936 0.92794 0.95559 0.93135 0.91695 0.92267 0.92282 0.92023 0.89523 0.90337 0.91657 0.89784 0.91003 0.91297 0.90126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.49 9.26 71.98 0.67 -5.83 16 2 C 0.06 2.35 5.67 86.30 0.49 2.84 16 3 N -0.55 -24.25 4.69 -900.81 -4.23 -28.48 16 4 C 0.20 11.06 4.54 85.56 0.39 11.45 16 5 C -0.52 -30.11 8.39 25.60 0.21 -29.90 16 6 H 0.06 3.44 7.39 -2.91 -0.02 3.42 16 7 C 0.00 0.02 5.46 84.65 0.46 0.48 16 8 N -0.94 -57.37 13.29 21.45 0.28 -57.08 16 9 Si 0.97 45.10 29.54 68.60 2.03 47.13 16 10 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 11 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 12 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 13 C 0.05 1.87 4.74 86.30 0.41 2.28 16 14 C -0.10 -2.78 5.14 30.60 0.16 -2.63 16 15 C -0.10 -2.33 5.04 30.60 0.15 -2.18 16 16 C -0.11 -2.14 3.64 -10.27 -0.04 -2.18 16 17 C -0.14 -2.45 7.65 31.18 0.24 -2.21 16 18 C -0.14 -2.08 8.09 31.18 0.25 -1.83 16 19 C -0.14 -2.27 7.65 31.12 0.24 -2.04 16 20 H 0.03 1.31 6.28 -2.39 -0.01 1.30 16 21 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 22 H 0.06 1.95 6.33 -2.39 -0.02 1.93 16 23 H 0.06 2.44 6.98 -2.38 -0.02 2.42 16 24 H 0.08 2.76 6.40 -2.39 -0.02 2.74 16 25 H -0.02 -1.24 6.02 -2.39 -0.01 -1.26 16 26 H -0.01 -0.44 7.91 -2.39 -0.02 -0.46 16 27 H 0.26 15.12 8.31 -92.70 -0.77 14.35 16 28 H 0.03 0.96 6.06 -2.39 -0.01 0.94 16 29 H 0.05 1.95 7.92 -2.39 -0.02 1.93 16 30 H 0.06 1.76 6.52 -2.39 -0.02 1.75 16 31 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 33 H 0.06 1.38 7.88 -2.39 -0.02 1.37 16 34 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.08 1.39 7.92 -2.38 -0.02 1.37 16 36 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.08 1.31 8.10 -2.38 -0.02 1.29 16 Total: -1.00 -63.47 309.23 2.69 -60.78 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: 0.97 Total: 9.39 kcal Atomic # 6 Polarization: -35.37 SS G_CDS: 3.63 Total: -31.73 kcal Atomic # 7 Polarization: -81.62 SS G_CDS: -3.94 Total: -85.56 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -63.47 2.69 -60.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595331618.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.685 kcal (2) G-P(sol) polarization free energy of solvation -63.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds