Wall clock time and date at job start Sun Mar 29 2020 21:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46897 * 109.47113 * 2 1 4 4 C 1.46897 * 111.00165 * 65.68383 * 3 2 1 5 5 C 1.50703 * 109.47017 * 66.04275 * 4 3 2 6 6 H 1.07998 * 120.00307 * 0.02562 * 5 4 3 7 7 C 1.37885 * 119.99852 * 180.02562 * 5 4 3 8 8 N 1.31514 * 119.99826 * 179.97438 * 7 5 4 9 9 Si 1.86794 * 119.99885 * 0.02562 * 7 5 4 10 10 H 1.48505 * 109.47050 * 269.99666 * 9 7 5 11 11 H 1.48497 * 109.47476 * 149.99989 * 9 7 5 12 12 H 1.48503 * 109.47552 * 29.99673 * 9 7 5 13 13 C 1.46897 * 111.00538 * 301.72686 * 3 2 1 14 14 H 1.08999 * 109.46735 * 65.69029 * 13 3 2 15 15 C 1.52994 * 109.47650 * 185.69648 * 13 3 2 16 16 C 1.53001 * 109.47340 * 180.02562 * 15 13 3 17 17 C 1.52999 * 109.46886 * 299.99864 * 16 15 13 18 18 C 1.53002 * 109.47046 * 60.00387 * 17 16 15 19 19 C 1.53001 * 109.46962 * 299.99567 * 18 17 16 20 20 H 1.08996 * 109.47483 * 180.02562 * 19 18 17 21 21 C 1.53005 * 109.47150 * 300.00279 * 19 18 17 22 22 H 1.08998 * 109.47121 * 180.39364 * 1 2 3 23 23 H 1.08998 * 109.47213 * 300.40358 * 1 2 3 24 24 H 1.09004 * 109.46912 * 60.39334 * 1 2 3 25 25 H 1.09004 * 109.47307 * 240.00207 * 2 1 3 26 26 H 1.08998 * 109.47025 * 119.99922 * 2 1 3 27 27 H 1.09002 * 109.47209 * 306.04709 * 4 3 2 28 28 H 1.09000 * 109.47324 * 186.04212 * 4 3 2 29 29 H 0.97005 * 119.99451 * 180.02562 * 8 7 5 30 30 H 1.08996 * 109.47384 * 300.00421 * 15 13 3 31 31 H 1.09007 * 109.46798 * 60.00138 * 15 13 3 32 32 H 1.08995 * 109.47091 * 59.99933 * 16 15 13 33 33 H 1.09004 * 109.46952 * 180.02562 * 16 15 13 34 34 H 1.09005 * 109.46770 * 179.97438 * 17 16 15 35 35 H 1.09000 * 109.47733 * 299.99758 * 17 16 15 36 36 H 1.08995 * 109.47436 * 59.99622 * 18 17 16 37 37 H 1.09006 * 109.47283 * 179.97438 * 18 17 16 38 38 H 1.08996 * 109.47074 * 179.97438 * 21 19 18 39 39 H 1.09006 * 109.46695 * 299.99971 * 21 19 18 40 40 H 1.08996 * 109.46982 * 59.99626 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6627 2.0696 1.2497 5 6 2.3964 1.4298 2.4002 6 1 3.0617 0.5982 2.2208 7 6 2.2184 1.9063 3.6818 8 7 2.8583 1.3477 4.6858 9 14 1.0672 3.3443 3.9920 10 1 1.8262 4.6167 3.8907 11 1 0.4808 3.2247 5.3510 12 1 -0.0204 3.3348 2.9810 13 6 1.5152 2.1218 -1.1664 14 1 0.4326 2.2238 -1.0913 15 6 2.1566 3.5101 -1.2092 16 6 1.6307 4.2778 -2.4237 17 6 1.9831 3.5137 -3.7016 18 6 1.3416 2.1253 -3.6589 19 6 1.8675 1.3577 -2.4443 20 1 1.4109 0.3684 -2.4141 21 6 3.3871 1.2144 -2.5504 22 1 -0.3633 -1.0276 0.0071 23 1 -0.3633 0.5201 0.8863 24 1 -0.3633 0.5077 -0.8935 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 0.5882 1.9888 1.4142 28 1 1.9417 3.1210 1.1806 29 1 2.7327 1.6827 5.5874 30 1 1.9054 4.0547 -0.2990 31 1 3.2393 3.4080 -1.2843 32 1 0.5482 4.3798 -2.3482 33 1 2.0881 5.2668 -2.4544 34 1 1.6080 4.0604 -4.5668 35 1 3.0656 3.4116 -3.7772 36 1 0.2591 2.2273 -3.5834 37 1 1.5922 1.5810 -4.5695 38 1 3.7618 0.6680 -1.6849 39 1 3.6380 0.6701 -3.4608 40 1 3.8440 2.2035 -2.5808 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611290076.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:07 Heat of formation + Delta-G solvation = -14.651227 kcal Electronic energy + Delta-G solvation = -16998.017659 eV Core-core repulsion = 14618.957700 eV Total energy + Delta-G solvation = -2379.059959 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.53909 -35.99569 -32.55448 -31.68300 -30.35324 -28.98071 -26.87227 -25.77070 -23.01365 -22.18562 -21.39529 -19.43773 -17.81953 -16.84065 -15.81960 -14.93976 -14.68559 -14.23637 -13.95296 -13.58034 -13.49803 -12.70506 -12.52298 -12.46044 -12.11942 -11.90434 -11.58007 -11.43563 -11.25685 -11.04199 -10.86610 -10.70674 -10.60013 -10.48025 -10.25817 -9.92244 -9.83209 -9.65235 -9.37417 -9.14811 -8.51245 -7.19276 -6.01321 -3.96922 3.29784 3.37371 3.39517 4.45020 4.71060 4.93640 4.96090 5.21576 5.32086 5.45710 5.57538 5.58950 5.69454 5.76729 5.78867 5.84526 5.92174 5.92472 6.04491 6.11006 6.18055 6.25702 6.28347 6.31938 6.34587 6.44552 6.56452 6.63431 6.68131 6.75650 6.88423 6.92212 7.04308 7.15701 7.69377 8.02754 8.18940 8.73332 9.08259 9.61485 11.12051 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.032242 B = 0.008691 C = 0.007852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.228969 B = 3220.934528 C = 3565.272306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.057 3.943 3 N -0.518 5.518 4 C 0.156 3.844 5 C -0.503 4.503 6 H 0.080 0.920 7 C 0.067 3.933 8 N -0.902 5.902 9 Si 0.871 3.129 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.268 1.268 13 C 0.088 3.912 14 H 0.030 0.970 15 C -0.116 4.116 16 C -0.117 4.117 17 C -0.119 4.119 18 C -0.113 4.113 19 C -0.086 4.086 20 H 0.067 0.933 21 C -0.139 4.139 22 H 0.048 0.952 23 H 0.060 0.940 24 H 0.044 0.956 25 H 0.058 0.942 26 H 0.085 0.915 27 H -0.009 1.009 28 H 0.026 0.974 29 H 0.262 0.738 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.053 0.947 35 H 0.065 0.935 36 H 0.055 0.945 37 H 0.057 0.943 38 H 0.070 0.930 39 H 0.037 0.963 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.630 2.358 -15.336 15.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.072 4.072 3 N -0.241 5.241 4 C 0.029 3.971 5 C -0.541 4.541 6 H 0.098 0.902 7 C -0.134 4.134 8 N -0.542 5.542 9 Si 0.699 3.301 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.193 1.193 13 C -0.021 4.021 14 H 0.048 0.952 15 C -0.154 4.154 16 C -0.155 4.155 17 C -0.156 4.156 18 C -0.151 4.151 19 C -0.104 4.104 20 H 0.085 0.915 21 C -0.196 4.196 22 H 0.067 0.933 23 H 0.079 0.921 24 H 0.063 0.937 25 H 0.077 0.923 26 H 0.104 0.896 27 H 0.008 0.992 28 H 0.044 0.956 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.089 0.911 39 H 0.056 0.944 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.083 2.357 -15.155 15.644 hybrid contribution -1.599 0.835 0.459 1.861 sum -4.682 3.192 -14.696 15.750 Atomic orbital electron populations 1.22397 0.99767 1.01035 1.01492 1.22053 0.91735 0.91404 1.01966 1.62175 1.58380 1.01488 1.02057 1.20258 0.94368 0.94772 0.87662 1.21056 1.26082 1.17533 0.89448 0.90219 1.24888 0.95696 0.96630 0.96166 1.69898 1.42873 1.41847 0.99582 0.86919 0.81931 0.83667 0.77595 1.20213 1.21319 1.19321 1.21537 0.96045 0.93485 0.91023 0.95229 1.21666 1.01425 0.95046 0.97244 1.21531 1.00607 0.98377 0.95014 1.21561 1.01054 0.95799 0.97220 1.21559 0.99704 0.95951 0.97842 1.21159 0.97118 0.98466 0.93688 0.91451 1.21800 0.95028 1.01773 1.01021 0.93292 0.92061 0.93653 0.92333 0.89647 0.99190 0.95593 0.92794 0.91787 0.90840 0.92615 0.92357 0.92848 0.91616 0.92629 0.92418 0.91117 0.94357 0.92537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.28 9.13 37.16 0.34 -2.94 16 2 C 0.06 1.08 5.27 -3.83 -0.02 1.06 16 3 N -0.52 -10.59 3.81 -228.09 -0.87 -11.46 16 4 C 0.16 3.75 3.47 -4.98 -0.02 3.73 16 5 C -0.50 -14.23 8.99 -34.44 -0.31 -14.54 16 6 H 0.08 2.46 7.38 -52.49 -0.39 2.07 16 7 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 8 N -0.90 -27.79 13.96 55.43 0.77 -27.02 16 9 Si 0.87 21.72 27.47 -169.99 -4.67 17.05 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.27 -6.48 6.54 56.52 0.37 -6.11 16 13 C 0.09 1.50 1.03 -67.72 -0.07 1.43 16 14 H 0.03 0.53 6.61 -51.93 -0.34 0.19 16 15 C -0.12 -1.89 4.77 -26.73 -0.13 -2.02 16 16 C -0.12 -1.53 5.92 -26.73 -0.16 -1.69 16 17 C -0.12 -1.38 5.65 -26.73 -0.15 -1.53 16 18 C -0.11 -1.36 5.45 -26.73 -0.15 -1.50 16 19 C -0.09 -1.22 2.12 -90.61 -0.19 -1.42 16 20 H 0.07 0.98 6.10 -51.93 -0.32 0.66 16 21 C -0.14 -1.97 8.26 37.16 0.31 -1.67 16 22 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.06 1.21 6.40 -51.93 -0.33 0.87 16 24 H 0.04 0.73 6.27 -51.93 -0.33 0.40 16 25 H 0.06 0.99 6.08 -51.93 -0.32 0.67 16 26 H 0.09 1.85 6.72 -51.93 -0.35 1.50 16 27 H -0.01 -0.23 5.25 -51.93 -0.27 -0.51 16 28 H 0.03 0.64 5.32 -51.93 -0.28 0.36 16 29 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 30 H 0.06 1.15 6.24 -51.93 -0.32 0.82 16 31 H 0.07 1.23 6.43 -51.92 -0.33 0.89 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.76 6.43 -51.93 -0.33 0.43 16 36 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 1.15 7.34 -51.93 -0.38 0.77 16 39 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.79 4.81 -51.93 -0.25 0.54 16 LS Contribution 284.20 15.07 4.28 4.28 Total: -1.00 -29.35 284.20 -7.79 -37.14 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -6.67 Total: -0.76 kcal Atomic # 6 Polarization: -18.59 SS G_CDS: -0.64 Total: -19.23 kcal Atomic # 7 Polarization: -38.39 SS G_CDS: -0.10 Total: -38.48 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.67 Total: 17.05 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -29.35 -7.79 -37.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611290076.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.490 kcal (2) G-P(sol) polarization free energy of solvation -29.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds