Wall clock time and date at job start Sun Mar 29 2020 21:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46900 * 110.99798 * 2 1 4 4 C 1.50694 * 109.47195 * 288.44106 * 3 2 1 5 5 H 1.08001 * 120.00380 * 359.97438 * 4 3 2 6 6 C 1.37876 * 120.00281 * 180.02562 * 4 3 2 7 7 N 1.31518 * 119.99766 * 359.97438 * 6 4 3 8 8 Si 1.86797 * 120.00404 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.47154 * 60.00016 * 8 6 4 10 10 H 1.48503 * 109.47362 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47242 * 299.99878 * 8 6 4 12 12 C 1.46902 * 111.00001 * 123.95361 * 2 1 3 13 13 C 1.52987 * 109.46737 * 49.86648 * 12 2 1 14 14 C 1.52998 * 109.47007 * 164.02015 * 13 12 2 15 15 C 1.53012 * 109.46410 * 75.95068 * 14 13 12 16 16 C 1.52996 * 109.45648 * 284.05038 * 15 14 13 17 17 C 1.52980 * 109.49904 * 315.99427 * 16 15 14 18 18 C 1.53003 * 109.48125 * 112.94200 * 17 16 15 19 19 C 1.52980 * 109.46603 * 169.89684 * 12 2 1 20 20 H 1.09000 * 109.47290 * 290.04384 * 1 2 3 21 21 H 1.08995 * 109.46904 * 50.05027 * 1 2 3 22 22 H 1.09003 * 109.46431 * 170.04544 * 1 2 3 23 23 H 1.09001 * 109.47439 * 48.43911 * 3 2 1 24 24 H 1.09001 * 109.47552 * 168.43456 * 3 2 1 25 25 H 0.97004 * 120.00130 * 180.02562 * 7 6 4 26 26 H 1.09001 * 109.46658 * 289.87855 * 12 2 1 27 27 H 1.08997 * 109.47464 * 284.01304 * 13 12 2 28 28 H 1.08998 * 109.46758 * 44.02171 * 13 12 2 29 29 H 1.09005 * 109.47169 * 315.94777 * 14 13 12 30 30 H 1.09001 * 109.47323 * 195.94754 * 14 13 12 31 31 H 1.08995 * 109.47302 * 164.05916 * 15 14 13 32 32 H 1.08998 * 109.47794 * 44.04859 * 15 14 13 33 33 H 1.08999 * 109.46600 * 195.98358 * 16 15 14 34 34 H 1.08998 * 109.45859 * 75.99722 * 16 15 14 35 35 H 1.09003 * 109.47393 * 352.93690 * 17 16 15 36 36 H 1.09002 * 109.46831 * 232.94356 * 17 16 15 37 37 H 1.08996 * 109.48203 * 164.05690 * 18 17 16 38 38 H 1.09001 * 109.48402 * 44.03102 * 18 17 16 39 39 H 1.09010 * 109.46881 * 247.06684 * 19 12 2 40 40 H 1.09000 * 109.46971 * 7.06015 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.7559 2.0015 -1.3478 5 1 1.2623 1.4392 -2.1267 6 6 2.1676 3.2954 -1.5870 7 7 2.7691 3.9799 -0.6387 8 14 1.8713 4.0761 -3.2579 9 1 0.4134 4.1059 -3.5388 10 1 2.4034 5.4626 -3.2579 11 1 2.5610 3.2808 -4.3052 12 6 1.9955 -0.7660 1.1376 13 6 1.3102 -2.1327 1.1929 14 6 2.1119 -3.0688 2.0994 15 6 1.8575 -2.7027 3.5631 16 6 2.6367 -1.4336 3.9138 17 6 4.0511 -1.5275 3.3386 18 6 4.2230 -0.4833 2.2336 19 6 3.5039 -0.9575 0.9690 20 1 -0.3634 0.3522 0.9654 21 1 -0.3633 0.6599 -0.7878 22 1 -0.3632 -1.0123 -0.1777 23 1 1.4892 1.9550 0.7689 24 1 3.0656 1.3500 0.2060 25 1 3.0585 4.8904 -0.8068 26 1 1.7994 -0.2237 2.0626 27 1 0.3018 -2.0178 1.5903 28 1 1.2594 -2.5544 0.1891 29 1 3.1745 -2.9666 1.8786 30 1 1.8017 -4.0988 1.9233 31 1 2.1866 -3.5200 4.2046 32 1 0.7922 -2.5284 3.7142 33 1 2.6914 -1.3287 4.9974 34 1 2.1291 -0.5671 3.4901 35 1 4.2099 -2.5235 2.9252 36 1 4.7780 -1.3424 4.1296 37 1 5.2837 -0.3508 2.0204 38 1 3.7966 0.4652 2.5601 39 1 3.7197 -2.0129 0.8023 40 1 3.8505 -0.3764 0.1144 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000748804857.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:33 Heat of formation + Delta-G solvation = -5.337643 kcal Electronic energy + Delta-G solvation = -16796.260490 eV Core-core repulsion = 14417.604398 eV Total energy + Delta-G solvation = -2378.656091 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.40707 -35.82217 -32.79324 -32.52376 -30.99095 -27.47193 -26.33466 -25.27337 -23.93212 -21.53856 -21.31920 -19.32138 -18.91249 -16.39515 -15.70223 -15.14723 -14.46219 -14.10621 -13.99709 -13.68434 -13.38713 -13.19095 -12.59839 -12.22656 -11.91559 -11.76482 -11.48601 -11.08875 -10.90972 -10.86195 -10.71730 -10.64980 -10.54996 -10.40624 -10.21889 -10.05580 -9.70397 -9.64692 -9.40836 -9.12132 -8.36027 -7.08018 -5.96954 -3.97749 3.36411 3.40122 3.43433 4.46664 4.86166 4.96625 5.05330 5.15815 5.37796 5.39135 5.42697 5.51836 5.55860 5.62684 5.83123 5.97201 6.00672 6.10118 6.14471 6.22565 6.26451 6.28082 6.32220 6.35613 6.41829 6.45065 6.54538 6.69411 6.77080 6.81559 6.83884 7.02089 7.39693 7.43618 7.89254 8.22172 8.31886 8.66328 9.10413 9.65996 11.13526 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.040934 B = 0.007067 C = 0.006463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.863006 B = 3961.216481 C = 4331.131854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.539 5.539 3 C 0.191 3.809 4 C -0.504 4.504 5 H 0.061 0.939 6 C 0.054 3.946 7 N -0.900 5.900 8 Si 0.897 3.103 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.277 1.277 12 C 0.080 3.920 13 C -0.111 4.111 14 C -0.138 4.138 15 C -0.115 4.115 16 C -0.131 4.131 17 C -0.124 4.124 18 C -0.120 4.120 19 C -0.118 4.118 20 H 0.006 0.994 21 H 0.070 0.930 22 H 0.046 0.954 23 H -0.013 1.013 24 H 0.034 0.966 25 H 0.260 0.740 26 H 0.040 0.960 27 H 0.053 0.947 28 H 0.066 0.934 29 H 0.088 0.912 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.052 0.948 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.051 0.949 37 H 0.056 0.944 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.081 -11.887 7.439 14.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.264 5.264 3 C 0.066 3.934 4 C -0.543 4.543 5 H 0.079 0.921 6 C -0.147 4.147 7 N -0.540 5.540 8 Si 0.725 3.275 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.202 1.202 12 C -0.028 4.028 13 C -0.149 4.149 14 C -0.176 4.176 15 C -0.153 4.153 16 C -0.168 4.168 17 C -0.161 4.161 18 C -0.158 4.158 19 C -0.156 4.156 20 H 0.024 0.976 21 H 0.089 0.911 22 H 0.065 0.935 23 H 0.005 0.995 24 H 0.052 0.948 25 H 0.070 0.930 26 H 0.058 0.942 27 H 0.072 0.928 28 H 0.085 0.915 29 H 0.106 0.894 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.157 -11.926 7.042 13.850 hybrid contribution -0.471 1.022 -0.081 1.129 sum -0.314 -10.903 6.961 12.940 Atomic orbital electron populations 1.22211 0.89475 1.00017 0.99523 1.62256 1.06336 1.17620 1.40153 1.19736 0.95557 0.81645 0.96439 1.21165 1.37659 0.97401 0.98097 0.92051 1.24985 0.95481 0.97225 0.96988 1.69955 1.40482 1.10826 1.32722 0.86587 0.78443 0.78123 0.84384 1.20372 1.21427 1.20216 1.21883 0.94448 0.93618 0.92864 1.21719 0.98184 0.95432 0.99561 1.22086 1.02510 0.98304 0.94658 1.21596 0.99827 0.97355 0.96495 1.21893 0.96231 0.99037 0.99685 1.21807 0.96336 0.99944 0.98002 1.21718 1.00120 0.98513 0.95415 1.21857 0.94543 1.01069 0.98112 0.97565 0.91080 0.93477 0.99540 0.94754 0.92993 0.94239 0.92822 0.91504 0.89435 0.92883 0.92827 0.92484 0.92938 0.90625 0.91221 0.92982 0.92503 0.91770 0.91716 0.90262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.73 8.69 60.07 0.52 1.25 16 2 N -0.54 -11.84 4.51 -236.35 -1.07 -12.90 16 3 C 0.19 5.04 4.45 -4.98 -0.02 5.02 16 4 C -0.50 -14.41 8.45 -34.44 -0.29 -14.70 16 5 H 0.06 1.74 7.55 -52.49 -0.40 1.35 16 6 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 7 N -0.90 -27.03 13.29 55.43 0.74 -26.29 16 8 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 9 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 12 C 0.08 1.45 1.51 -67.73 -0.10 1.35 16 13 C -0.11 -1.67 3.85 -26.74 -0.10 -1.77 16 14 C -0.14 -1.73 5.33 -26.73 -0.14 -1.87 16 15 C -0.12 -1.36 5.71 -26.73 -0.15 -1.51 16 16 C -0.13 -1.68 5.48 -26.74 -0.15 -1.82 16 17 C -0.12 -1.57 5.47 -26.74 -0.15 -1.72 16 18 C -0.12 -1.85 5.59 -26.72 -0.15 -2.00 16 19 C -0.12 -2.03 4.60 -26.74 -0.12 -2.15 16 20 H 0.01 0.12 8.12 -51.93 -0.42 -0.31 16 21 H 0.07 1.53 7.07 -51.93 -0.37 1.17 16 22 H 0.05 0.82 6.86 -51.93 -0.36 0.46 16 23 H -0.01 -0.38 8.06 -51.93 -0.42 -0.80 16 24 H 0.03 0.95 6.30 -51.93 -0.33 0.62 16 25 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 26 H 0.04 0.76 4.67 -51.93 -0.24 0.51 16 27 H 0.05 0.79 7.14 -51.93 -0.37 0.42 16 28 H 0.07 1.05 8.06 -51.93 -0.42 0.63 16 29 H 0.09 1.11 2.83 -51.93 -0.15 0.96 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.67 7.82 -51.93 -0.41 0.27 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 1.13 4.69 -51.93 -0.24 0.89 16 35 H 0.07 0.83 5.47 -51.93 -0.28 0.54 16 36 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.06 1.11 7.47 -51.93 -0.39 0.72 16 39 H 0.06 0.99 5.47 -51.92 -0.28 0.70 16 40 H 0.08 1.61 6.54 -51.93 -0.34 1.27 16 LS Contribution 286.39 15.07 4.32 4.32 Total: -1.00 -29.34 286.39 -8.65 -37.98 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -6.66 Total: -1.57 kcal Atomic # 6 Polarization: -17.51 SS G_CDS: -0.95 Total: -18.47 kcal Atomic # 7 Polarization: -38.87 SS G_CDS: -0.33 Total: -39.19 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -29.34 -8.65 -37.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748804857.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.646 kcal (2) G-P(sol) polarization free energy of solvation -29.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds