Wall clock time and date at job start Sun Mar 29 2020 21:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46900 * 110.99798 * 2 1 4 4 C 1.50694 * 109.47195 * 288.44106 * 3 2 1 5 5 H 1.08001 * 120.00380 * 359.97438 * 4 3 2 6 6 C 1.37876 * 120.00281 * 180.02562 * 4 3 2 7 7 N 1.31518 * 119.99766 * 359.97438 * 6 4 3 8 8 Si 1.86797 * 120.00404 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.47154 * 60.00016 * 8 6 4 10 10 H 1.48503 * 109.47362 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47242 * 299.99878 * 8 6 4 12 12 C 1.46902 * 111.00001 * 123.95361 * 2 1 3 13 13 C 1.52987 * 109.46737 * 49.86648 * 12 2 1 14 14 C 1.52998 * 109.47007 * 164.02015 * 13 12 2 15 15 C 1.53012 * 109.46410 * 75.95068 * 14 13 12 16 16 C 1.52996 * 109.45648 * 284.05038 * 15 14 13 17 17 C 1.52980 * 109.49904 * 315.99427 * 16 15 14 18 18 C 1.53003 * 109.48125 * 112.94200 * 17 16 15 19 19 C 1.52980 * 109.46603 * 169.89684 * 12 2 1 20 20 H 1.09000 * 109.47290 * 290.04384 * 1 2 3 21 21 H 1.08995 * 109.46904 * 50.05027 * 1 2 3 22 22 H 1.09003 * 109.46431 * 170.04544 * 1 2 3 23 23 H 1.09001 * 109.47439 * 48.43911 * 3 2 1 24 24 H 1.09001 * 109.47552 * 168.43456 * 3 2 1 25 25 H 0.97004 * 120.00130 * 180.02562 * 7 6 4 26 26 H 1.09001 * 109.46658 * 289.87855 * 12 2 1 27 27 H 1.08997 * 109.47464 * 284.01304 * 13 12 2 28 28 H 1.08998 * 109.46758 * 44.02171 * 13 12 2 29 29 H 1.09005 * 109.47169 * 315.94777 * 14 13 12 30 30 H 1.09001 * 109.47323 * 195.94754 * 14 13 12 31 31 H 1.08995 * 109.47302 * 164.05916 * 15 14 13 32 32 H 1.08998 * 109.47794 * 44.04859 * 15 14 13 33 33 H 1.08999 * 109.46600 * 195.98358 * 16 15 14 34 34 H 1.08998 * 109.45859 * 75.99722 * 16 15 14 35 35 H 1.09003 * 109.47393 * 352.93690 * 17 16 15 36 36 H 1.09002 * 109.46831 * 232.94356 * 17 16 15 37 37 H 1.08996 * 109.48203 * 164.05690 * 18 17 16 38 38 H 1.09001 * 109.48402 * 44.03102 * 18 17 16 39 39 H 1.09010 * 109.46881 * 247.06684 * 19 12 2 40 40 H 1.09000 * 109.46971 * 7.06015 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.7559 2.0015 -1.3478 5 1 1.2623 1.4392 -2.1267 6 6 2.1676 3.2954 -1.5870 7 7 2.7691 3.9799 -0.6387 8 14 1.8713 4.0761 -3.2579 9 1 0.4134 4.1059 -3.5388 10 1 2.4034 5.4626 -3.2579 11 1 2.5610 3.2808 -4.3052 12 6 1.9955 -0.7660 1.1376 13 6 1.3102 -2.1327 1.1929 14 6 2.1119 -3.0688 2.0994 15 6 1.8575 -2.7027 3.5631 16 6 2.6367 -1.4336 3.9138 17 6 4.0511 -1.5275 3.3386 18 6 4.2230 -0.4833 2.2336 19 6 3.5039 -0.9575 0.9690 20 1 -0.3634 0.3522 0.9654 21 1 -0.3633 0.6599 -0.7878 22 1 -0.3632 -1.0123 -0.1777 23 1 1.4892 1.9550 0.7689 24 1 3.0656 1.3500 0.2060 25 1 3.0585 4.8904 -0.8068 26 1 1.7994 -0.2237 2.0626 27 1 0.3018 -2.0178 1.5903 28 1 1.2594 -2.5544 0.1891 29 1 3.1745 -2.9666 1.8786 30 1 1.8017 -4.0988 1.9233 31 1 2.1866 -3.5200 4.2046 32 1 0.7922 -2.5284 3.7142 33 1 2.6914 -1.3287 4.9974 34 1 2.1291 -0.5671 3.4901 35 1 4.2099 -2.5235 2.9252 36 1 4.7780 -1.3424 4.1296 37 1 5.2837 -0.3508 2.0204 38 1 3.7966 0.4652 2.5601 39 1 3.7197 -2.0129 0.8023 40 1 3.8505 -0.3764 0.1144 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000748804857.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:33 Heat of formation + Delta-G solvation = -22.861390 kcal Electronic energy + Delta-G solvation = -16797.020376 eV Core-core repulsion = 14417.604398 eV Total energy + Delta-G solvation = -2379.415978 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.71720 -37.39755 -34.74539 -33.83069 -32.43064 -29.41296 -27.74287 -26.60554 -25.61503 -23.13446 -22.73135 -20.62705 -20.20192 -18.51305 -17.15176 -16.78512 -16.08478 -15.61159 -15.34563 -14.94516 -14.88221 -14.55442 -14.17143 -13.83039 -13.54155 -13.23774 -12.98992 -12.80842 -12.67680 -12.47074 -12.20059 -12.11168 -11.93177 -11.74728 -11.61758 -11.49668 -11.22516 -11.02238 -10.85222 -10.72941 -10.57557 -8.89818 -8.18901 -6.29493 1.39532 1.43127 1.51055 2.40276 3.12193 3.36918 3.73845 3.93548 4.09241 4.25802 4.29751 4.33358 4.37222 4.42737 4.49743 4.55846 4.70723 4.87114 4.92118 4.96554 5.03119 5.05457 5.08178 5.15498 5.19996 5.21393 5.22136 5.31809 5.34615 5.47281 5.48677 5.51934 5.63650 5.69377 5.72866 6.12074 6.42398 6.75186 6.87446 7.40078 8.91234 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.040934 B = 0.007067 C = 0.006463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.863006 B = 3961.216481 C = 4331.131854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.548 5.548 3 C 0.211 3.789 4 C -0.524 4.524 5 H 0.060 0.940 6 C 0.000 4.000 7 N -0.935 5.935 8 Si 0.969 3.031 9 H -0.268 1.268 10 H -0.282 1.282 11 H -0.268 1.268 12 C 0.078 3.922 13 C -0.104 4.104 14 C -0.133 4.133 15 C -0.112 4.112 16 C -0.133 4.133 17 C -0.116 4.116 18 C -0.117 4.117 19 C -0.114 4.114 20 H 0.006 0.994 21 H 0.050 0.950 22 H 0.081 0.919 23 H -0.050 1.050 24 H 0.011 0.989 25 H 0.264 0.736 26 H 0.029 0.971 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.046 0.954 35 H 0.087 0.913 36 H 0.066 0.934 37 H 0.061 0.939 38 H 0.033 0.967 39 H 0.090 0.910 40 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.322 -13.905 7.425 15.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.272 5.272 3 C 0.085 3.915 4 C -0.563 4.563 5 H 0.078 0.922 6 C -0.197 4.197 7 N -0.576 5.576 8 Si 0.794 3.206 9 H -0.193 1.193 10 H -0.208 1.208 11 H -0.193 1.193 12 C -0.030 4.030 13 C -0.142 4.142 14 C -0.170 4.170 15 C -0.149 4.149 16 C -0.170 4.170 17 C -0.153 4.153 18 C -0.155 4.155 19 C -0.151 4.151 20 H 0.024 0.976 21 H 0.069 0.931 22 H 0.099 0.901 23 H -0.032 1.032 24 H 0.029 0.971 25 H 0.072 0.928 26 H 0.047 0.953 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.105 0.895 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.064 0.936 35 H 0.105 0.895 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.052 0.948 39 H 0.108 0.892 40 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -0.095 -13.967 7.035 15.639 hybrid contribution -0.394 1.644 -0.032 1.691 sum -0.489 -12.323 7.003 14.183 Atomic orbital electron populations 1.22207 0.88282 1.01548 0.98798 1.62224 1.07533 1.15033 1.42415 1.19335 0.93858 0.83766 0.94573 1.21485 1.37885 0.98077 0.98823 0.92186 1.25927 0.94911 0.97726 1.01181 1.70092 1.41237 1.11228 1.35005 0.85443 0.78797 0.77179 0.79231 1.19302 1.20753 1.19298 1.22037 0.95283 0.94832 0.90862 1.21681 0.98568 0.93668 1.00313 1.22052 1.01867 0.98690 0.94385 1.21592 0.99694 0.97299 0.96362 1.21879 0.96097 0.98648 1.00382 1.21760 0.96783 0.99511 0.97212 1.21671 0.99826 0.98195 0.95824 1.21832 0.94057 1.01877 0.97353 0.97553 0.93082 0.90096 1.03223 0.97061 0.92764 0.95315 0.92377 0.91752 0.89484 0.90522 0.90419 0.92513 0.91579 0.93553 0.89462 0.91489 0.92032 0.94844 0.89154 0.94299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.62 8.69 127.69 1.11 2.73 16 2 N -0.55 -24.72 4.51 -901.68 -4.06 -28.79 16 3 C 0.21 11.74 4.45 85.56 0.38 12.12 16 4 C -0.52 -30.89 8.45 25.60 0.22 -30.68 16 5 H 0.06 3.47 7.55 -2.91 -0.02 3.45 16 6 C 0.00 0.02 5.46 84.65 0.46 0.48 16 7 N -0.94 -57.84 13.29 21.45 0.28 -57.56 16 8 Si 0.97 45.44 29.54 68.60 2.03 47.47 16 9 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 10 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 11 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 12 C 0.08 2.84 1.51 44.90 0.07 2.91 16 13 C -0.10 -2.95 3.85 30.59 0.12 -2.83 16 14 C -0.13 -2.87 5.33 30.60 0.16 -2.71 16 15 C -0.11 -2.28 5.71 30.60 0.17 -2.10 16 16 C -0.13 -3.17 5.48 30.59 0.17 -3.01 16 17 C -0.12 -2.72 5.47 30.59 0.17 -2.55 16 18 C -0.12 -3.68 5.59 30.60 0.17 -3.51 16 19 C -0.11 -3.95 4.60 30.59 0.14 -3.81 16 20 H 0.01 0.24 8.12 -2.39 -0.02 0.22 16 21 H 0.05 2.24 7.07 -2.39 -0.02 2.22 16 22 H 0.08 2.70 6.86 -2.39 -0.02 2.68 16 23 H -0.05 -3.07 8.06 -2.39 -0.02 -3.08 16 24 H 0.01 0.67 6.30 -2.39 -0.02 0.66 16 25 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 26 H 0.03 1.15 4.67 -2.39 -0.01 1.13 16 27 H 0.06 1.59 7.14 -2.39 -0.02 1.57 16 28 H 0.06 1.86 8.06 -2.39 -0.02 1.84 16 29 H 0.09 1.90 2.83 -2.38 -0.01 1.89 16 30 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.06 1.18 7.82 -2.39 -0.02 1.16 16 33 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.05 1.39 4.69 -2.39 -0.01 1.38 16 35 H 0.09 1.78 5.47 -2.39 -0.01 1.76 16 36 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.03 1.23 7.47 -2.39 -0.02 1.21 16 39 H 0.09 2.63 5.47 -2.38 -0.01 2.62 16 40 H 0.04 1.65 6.54 -2.39 -0.02 1.64 16 Total: -1.00 -65.30 286.39 2.59 -62.71 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: 1.00 Total: 9.12 kcal Atomic # 6 Polarization: -36.29 SS G_CDS: 3.34 Total: -32.95 kcal Atomic # 7 Polarization: -82.57 SS G_CDS: -3.78 Total: -86.35 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -65.30 2.59 -62.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748804857.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.852 kcal (2) G-P(sol) polarization free energy of solvation -65.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds