Wall clock time and date at job start Sun Mar 29 2020 21:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86800 * 120.00367 * 2 1 4 4 H 1.48503 * 109.47292 * 270.00314 * 3 2 1 5 5 H 1.48504 * 109.46709 * 29.99856 * 3 2 1 6 6 H 1.48496 * 109.47395 * 149.99866 * 3 2 1 7 7 C 1.38950 * 119.99928 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00444 * 0.02562 * 7 2 1 9 9 N 1.37105 * 120.00048 * 179.97438 * 7 2 1 10 10 C 1.34773 * 119.99873 * 179.72298 * 9 7 2 11 11 O 1.21295 * 120.00056 * 0.02562 * 10 9 7 12 12 C 1.50706 * 120.00080 * 180.02562 * 10 9 7 13 13 N 1.46898 * 109.46984 * 180.02562 * 12 10 9 14 14 C 1.46830 * 111.00023 * 294.68041 * 13 12 10 15 15 C 1.53298 * 109.39788 * 170.25171 * 14 13 12 16 16 C 1.51428 * 108.24544 * 53.79704 * 15 14 13 17 17 O 1.20758 * 121.11589 * 130.94486 * 16 15 14 18 18 C 1.51440 * 117.77588 * 310.97388 * 16 15 14 19 19 C 1.46833 * 110.99579 * 170.00127 * 13 12 10 20 20 H 0.96999 * 119.99865 * 359.97438 * 1 2 3 21 21 H 0.96996 * 120.00209 * 0.02562 * 9 7 2 22 22 H 1.09004 * 109.46762 * 300.00389 * 12 10 9 23 23 H 1.09001 * 109.46863 * 60.00488 * 12 10 9 24 24 H 1.09000 * 109.48419 * 290.23324 * 14 13 12 25 25 H 1.09004 * 109.47882 * 50.27221 * 14 13 12 26 26 H 1.09005 * 109.70938 * 294.10468 * 15 14 13 27 27 H 1.09004 * 109.70675 * 173.48880 * 15 14 13 28 28 H 1.08997 * 109.70761 * 289.33311 * 18 16 15 29 29 H 1.09002 * 109.74181 * 168.73505 * 18 16 15 30 30 H 1.09000 * 109.48586 * 309.72679 * 19 13 12 31 31 H 1.09003 * 109.48575 * 69.77283 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6526 0.7000 6 1 3.5457 1.4401 0.7000 7 6 2.0088 -1.2034 0.0005 8 1 1.4688 -2.1387 0.0005 9 7 3.3798 -1.2034 0.0000 10 6 4.0536 -2.3706 0.0062 11 8 3.4471 -3.4210 0.0117 12 6 5.5607 -2.3706 0.0062 13 7 6.0503 -3.7556 0.0129 14 6 5.6860 -4.4365 1.2617 15 6 5.9943 -5.9327 1.1346 16 6 7.4420 -6.0846 0.7172 17 8 8.1829 -6.8407 1.2982 18 6 7.9298 -5.2562 -0.4529 19 6 7.4984 -3.8029 -0.2249 20 1 -0.4850 0.8400 0.0004 21 1 3.8649 -0.3634 -0.0004 22 1 5.9240 -1.8615 -0.8865 23 1 5.9240 -1.8522 0.8935 24 1 6.2611 -4.0155 2.0864 25 1 4.6217 -4.2995 1.4533 26 1 5.3456 -6.3790 0.3808 27 1 5.8350 -6.4237 2.0946 28 1 7.4889 -5.6299 -1.3770 29 1 9.0166 -5.3115 -0.5156 30 1 7.7418 -3.2090 -1.1059 31 1 8.0225 -3.3998 0.6417 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019482048.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:31 Heat of formation + Delta-G solvation = -88.254832 kcal Electronic energy + Delta-G solvation = -15560.061292 eV Core-core repulsion = 12840.717541 eV Total energy + Delta-G solvation = -2719.343750 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.10554 -40.16776 -38.14402 -35.91275 -33.74886 -32.80154 -32.22040 -28.55336 -25.95980 -24.64246 -23.20886 -21.23446 -20.21305 -20.02798 -17.76036 -17.21790 -16.77174 -16.52600 -16.30347 -15.96474 -15.64144 -15.35870 -15.00360 -14.85442 -14.33777 -13.93727 -13.41583 -13.19126 -12.94429 -12.80573 -12.41960 -12.36618 -12.27993 -12.09611 -11.94806 -11.43814 -10.53190 -10.27557 -10.17804 -9.25149 -8.38037 -5.98415 0.88800 1.32660 1.38391 1.46907 2.00750 2.25915 2.57862 3.10771 3.18492 3.24556 3.85690 3.92229 4.01682 4.19079 4.24695 4.35836 4.50858 4.54924 4.60916 4.79464 4.85236 4.99849 5.05382 5.11359 5.56124 5.86187 6.01045 6.15748 6.45200 6.63641 6.92834 7.44647 8.01987 8.79677 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.060942 B = 0.005850 C = 0.005516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.341732 B = 4784.793499 C = 5075.150641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.016 4.016 3 Si 0.964 3.036 4 H -0.257 1.257 5 H -0.279 1.279 6 H -0.230 1.230 7 C -0.325 4.325 8 H 0.056 0.944 9 N -0.593 5.593 10 C 0.450 3.550 11 O -0.604 6.604 12 C 0.056 3.944 13 N -0.540 5.540 14 C 0.061 3.939 15 C -0.160 4.160 16 C 0.368 3.632 17 O -0.500 6.500 18 C -0.157 4.157 19 C 0.062 3.938 20 H 0.278 0.722 21 H 0.389 0.611 22 H 0.130 0.870 23 H 0.080 0.920 24 H 0.042 0.958 25 H 0.075 0.925 26 H 0.105 0.895 27 H 0.091 0.909 28 H 0.117 0.883 29 H 0.111 0.889 30 H 0.114 0.886 31 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.127 -0.966 -0.639 18.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.214 4.214 3 Si 0.784 3.216 4 H -0.181 1.181 5 H -0.204 1.204 6 H -0.153 1.153 7 C -0.454 4.454 8 H 0.074 0.926 9 N -0.235 5.235 10 C 0.238 3.762 11 O -0.488 6.488 12 C -0.075 4.075 13 N -0.265 5.265 14 C -0.067 4.067 15 C -0.198 4.198 16 C 0.247 3.753 17 O -0.376 6.376 18 C -0.195 4.195 19 C -0.065 4.065 20 H 0.087 0.913 21 H 0.225 0.775 22 H 0.148 0.852 23 H 0.098 0.902 24 H 0.060 0.940 25 H 0.093 0.907 26 H 0.123 0.877 27 H 0.109 0.891 28 H 0.135 0.865 29 H 0.129 0.871 30 H 0.133 0.867 31 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 17.700 -2.209 -0.713 17.852 hybrid contribution -0.277 1.191 0.703 1.410 sum 17.423 -1.019 -0.010 17.453 Atomic orbital electron populations 1.69806 1.08210 1.29148 1.50631 1.26099 0.96411 1.02712 0.96215 0.85379 0.79509 0.76786 0.79922 1.18126 1.20418 1.15296 1.18997 0.81560 0.94850 1.50035 0.92594 1.42047 1.05745 1.07680 1.68045 1.20931 0.90909 0.83295 0.81040 1.90523 1.71267 1.32478 1.54496 1.21825 0.90162 0.90560 1.04955 1.61289 1.14443 1.14783 1.36009 1.22074 1.02215 0.92480 0.89951 1.22318 0.95641 0.97703 1.04155 1.25321 0.89587 0.77589 0.82843 1.90379 1.59611 1.34186 1.53470 1.22387 1.03480 0.95256 0.98330 1.22203 0.85405 0.95794 1.03104 0.91267 0.77508 0.85228 0.90240 0.94036 0.90663 0.87716 0.89079 0.86451 0.87106 0.86738 0.93300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.86 13.96 21.66 0.30 -55.56 16 2 C -0.02 -0.87 5.50 84.93 0.47 -0.41 16 3 Si 0.96 37.68 27.74 68.60 1.90 39.58 16 4 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 5 H -0.28 -10.98 7.11 99.48 0.71 -10.27 16 6 H -0.23 -7.42 6.52 99.48 0.65 -6.78 16 7 C -0.33 -18.52 10.16 84.04 0.85 -17.66 16 8 H 0.06 3.81 7.39 -2.91 -0.02 3.79 16 9 N -0.59 -26.62 5.09 -306.97 -1.56 -28.18 16 10 C 0.45 18.99 7.42 87.66 0.65 19.64 16 11 O -0.60 -31.38 13.90 -3.08 -0.04 -31.43 16 12 C 0.06 1.51 5.45 85.56 0.47 1.97 16 13 N -0.54 -14.21 4.32 -899.93 -3.89 -18.10 16 14 C 0.06 1.74 5.13 86.42 0.44 2.18 16 15 C -0.16 -4.12 6.35 30.18 0.19 -3.93 16 16 C 0.37 8.92 6.80 29.57 0.20 9.12 16 17 O -0.50 -15.11 17.91 -1.44 -0.03 -15.14 16 18 C -0.16 -2.72 6.35 30.18 0.19 -2.53 16 19 C 0.06 1.07 5.51 86.41 0.48 1.55 16 20 H 0.28 15.17 8.31 -92.71 -0.77 14.40 16 21 H 0.39 14.29 5.76 -92.71 -0.53 13.75 16 22 H 0.13 2.65 7.93 -2.39 -0.02 2.63 16 23 H 0.08 1.77 8.13 -2.39 -0.02 1.75 16 24 H 0.04 1.05 8.10 -2.39 -0.02 1.03 16 25 H 0.08 2.78 5.71 -2.38 -0.01 2.77 16 26 H 0.10 2.81 8.14 -2.38 -0.02 2.79 16 27 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 28 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.11 1.42 7.94 -2.39 -0.02 1.40 16 31 H 0.05 0.76 8.10 -2.39 -0.02 0.74 16 Total: -1.00 -75.21 262.25 1.17 -74.04 By element: Atomic # 1 Polarization: 24.29 SS G_CDS: 0.55 Total: 24.83 kcal Atomic # 6 Polarization: 6.00 SS G_CDS: 3.94 Total: 9.94 kcal Atomic # 7 Polarization: -96.68 SS G_CDS: -5.15 Total: -101.83 kcal Atomic # 8 Polarization: -46.49 SS G_CDS: -0.07 Total: -46.56 kcal Atomic # 14 Polarization: 37.68 SS G_CDS: 1.90 Total: 39.58 kcal Total: -75.21 1.17 -74.04 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019482048.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.218 kcal (2) G-P(sol) polarization free energy of solvation -75.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds