Wall clock time and date at job start Sun Mar 29 2020 22:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99753 * 2 1 4 4 H 1.48507 * 109.46760 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47423 * 300.00193 * 3 2 1 6 6 H 1.48496 * 109.47248 * 60.00480 * 3 2 1 7 7 C 1.37871 * 119.99945 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00423 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99995 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47063 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47081 * 180.02562 * 10 9 7 12 12 N 1.46898 * 109.46709 * 185.62858 * 11 10 9 13 13 C 1.47897 * 111.00382 * 65.20218 * 12 11 10 14 14 C 1.53993 * 107.22799 * 214.25409 * 13 12 11 15 15 C 1.54596 * 105.13656 * 1.12141 * 14 13 12 16 16 C 1.48809 * 111.18740 * 307.85621 * 12 11 10 17 17 H 1.09001 * 110.65729 * 41.01239 * 16 12 11 18 18 C 1.50696 * 110.70489 * 278.02671 * 16 12 11 19 19 N 1.34774 * 120.00414 * 184.56939 * 18 16 12 20 20 O 1.21283 * 119.99599 * 4.57182 * 18 16 12 21 21 H 0.97000 * 120.00117 * 359.97438 * 1 2 3 22 22 H 1.08999 * 109.47026 * 60.00458 * 9 7 2 23 23 H 1.08996 * 109.47064 * 300.00245 * 9 7 2 24 24 H 1.08997 * 109.46938 * 59.99699 * 10 9 7 25 25 H 1.09004 * 109.46991 * 300.00142 * 10 9 7 26 26 H 1.09001 * 109.47028 * 65.62876 * 11 10 9 27 27 H 1.08998 * 109.46613 * 305.62959 * 11 10 9 28 28 H 1.09000 * 109.91973 * 94.79676 * 13 12 11 29 29 H 1.09007 * 109.91473 * 333.70207 * 13 12 11 30 30 H 1.08997 * 110.31433 * 120.03968 * 14 13 12 31 31 H 1.09006 * 110.30678 * 242.11129 * 14 13 12 32 32 H 1.08997 * 110.72454 * 140.32100 * 15 14 13 33 33 H 1.09003 * 110.72441 * 263.59959 * 15 14 13 34 34 H 0.97002 * 119.99543 * 0.02562 * 19 18 16 35 35 H 0.96997 * 120.00180 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 7 2.4290 -6.1003 0.1347 13 6 3.1038 -6.0641 1.4502 14 6 4.5399 -6.5791 1.2405 15 6 4.6440 -6.8798 -0.2724 16 6 3.5158 -6.0072 -0.8776 17 1 3.8472 -4.9752 -0.9922 18 6 3.0612 -6.5680 -2.2004 19 7 3.9295 -6.6615 -3.2269 20 8 1.9139 -6.9352 -2.3413 21 1 -0.4850 0.8400 0.0004 22 1 0.6240 -2.5567 -0.8903 23 1 0.6246 -2.5570 0.8896 24 1 2.8719 -3.6043 0.8894 25 1 2.8719 -3.6043 -0.8905 26 1 0.9316 -5.0895 -0.9375 27 1 0.7798 -5.0026 0.8339 28 1 2.5778 -6.7077 2.1553 29 1 3.1275 -5.0417 1.8274 30 1 5.2617 -5.8135 1.5246 31 1 4.7045 -7.4873 1.8204 32 1 5.6164 -6.5762 -0.6599 33 1 4.4620 -7.9364 -0.4691 34 1 4.8472 -6.3681 -3.1141 35 1 3.6370 -7.0228 -4.0782 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042223502.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:15 Heat of formation + Delta-G solvation = -46.343555 kcal Electronic energy + Delta-G solvation = -15997.940331 eV Core-core repulsion = 13416.247084 eV Total energy + Delta-G solvation = -2581.693246 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.03448 -37.81790 -34.33159 -33.51236 -32.37623 -29.96574 -29.22709 -26.04583 -23.70607 -22.29286 -20.90589 -20.72838 -19.18273 -17.15807 -16.78076 -16.37177 -15.65551 -14.92170 -14.49450 -14.42370 -14.09112 -13.63581 -13.16048 -12.57774 -12.54804 -11.89998 -11.82873 -11.43452 -11.29239 -11.05617 -10.83591 -10.62156 -10.61068 -10.53300 -9.70121 -9.61152 -9.54599 -9.40897 -9.16904 -8.35417 -7.90411 -5.99836 -4.02936 2.83720 3.29435 3.36770 3.40127 3.48210 4.37180 4.44750 4.63187 4.67956 4.96546 5.20598 5.31669 5.35724 5.50939 5.69925 5.72241 5.78931 5.89132 6.02219 6.06955 6.19801 6.33161 6.53042 6.79658 6.88619 7.05265 7.11248 7.39227 7.46701 7.67182 7.82054 7.99787 8.41969 8.44450 9.04246 9.61100 11.11275 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.031081 B = 0.006291 C = 0.006026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.644289 B = 4449.600219 C = 4645.107831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.053 0.947 9 C 0.025 3.975 10 C -0.145 4.145 11 C 0.043 3.957 12 N -0.494 5.494 13 C 0.027 3.973 14 C -0.128 4.128 15 C -0.111 4.111 16 C 0.032 3.968 17 H 0.095 0.905 18 C 0.529 3.471 19 N -0.861 5.861 20 O -0.522 6.522 21 H 0.260 0.740 22 H 0.017 0.983 23 H 0.017 0.983 24 H 0.051 0.949 25 H 0.046 0.954 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.398 0.602 35 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.545 -13.120 -1.397 17.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.071 0.929 9 C -0.013 4.013 10 C -0.184 4.184 11 C -0.085 4.085 12 N -0.217 5.217 13 C -0.101 4.101 14 C -0.166 4.166 15 C -0.150 4.150 16 C -0.080 4.080 17 H 0.112 0.888 18 C 0.313 3.687 19 N -0.426 5.426 20 O -0.396 6.396 21 H 0.070 0.930 22 H 0.035 0.965 23 H 0.035 0.965 24 H 0.069 0.931 25 H 0.065 0.935 26 H 0.098 0.902 27 H 0.093 0.907 28 H 0.096 0.904 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.226 0.774 35 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 10.263 -13.680 -1.340 17.154 hybrid contribution 1.190 1.861 -0.248 2.223 sum 11.453 -11.819 -1.588 16.534 Atomic orbital electron populations 1.69976 1.06044 1.26482 1.50823 1.25032 0.94838 0.99232 0.95369 0.86563 0.80039 0.83923 0.77627 1.19825 1.20990 1.20967 1.21281 0.92907 0.91170 1.50561 0.92858 1.19019 0.93852 0.91069 0.97353 1.22267 1.00105 0.96150 0.99866 1.22476 0.94973 0.87905 1.03148 1.64797 1.12436 1.43804 1.00708 1.22943 0.93462 1.01239 0.92480 1.22369 0.97046 1.01424 0.95760 1.22431 0.96747 1.00030 0.95763 1.22898 0.93222 1.00357 0.91506 0.88795 1.20375 0.85411 0.77514 0.85382 1.43845 1.14669 1.68833 1.15231 1.90729 1.18533 1.47265 1.83092 0.93025 0.96505 0.96507 0.93084 0.93518 0.90239 0.90733 0.90425 0.92210 0.91204 0.90990 0.90659 0.90647 0.77399 0.77067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.33 13.29 55.43 0.74 -26.59 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.52 -14.94 9.11 -34.44 -0.31 -15.25 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.02 0.65 4.97 -27.88 -0.14 0.52 16 10 C -0.15 -3.04 4.30 -26.73 -0.11 -3.16 16 11 C 0.04 0.81 5.22 -3.82 -0.02 0.79 16 12 N -0.49 -8.12 4.85 -223.77 -1.09 -9.20 16 13 C 0.03 0.37 6.45 -2.76 -0.02 0.35 16 14 C -0.13 -1.36 6.93 -25.37 -0.18 -1.54 16 15 C -0.11 -1.16 6.44 -24.87 -0.16 -1.32 16 16 C 0.03 0.45 2.49 -66.79 -0.17 0.29 16 17 H 0.09 1.38 5.51 -51.93 -0.29 1.09 16 18 C 0.53 7.87 7.40 -10.99 -0.08 7.78 16 19 N -0.86 -8.47 8.82 31.22 0.28 -8.20 16 20 O -0.52 -10.18 16.50 5.56 0.09 -10.09 16 21 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 22 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.05 1.03 6.12 -51.93 -0.32 0.71 16 25 H 0.05 0.96 6.28 -51.93 -0.33 0.64 16 26 H 0.08 1.67 7.41 -51.93 -0.39 1.29 16 27 H 0.07 1.42 8.13 -51.93 -0.42 1.00 16 28 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.06 0.89 5.80 -51.93 -0.30 0.59 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.79 8.05 -51.93 -0.42 0.37 16 34 H 0.40 2.66 8.82 -40.82 -0.36 2.30 16 35 H 0.40 3.46 8.93 -40.82 -0.36 3.09 16 LS Contribution 283.04 15.07 4.27 4.27 Total: -1.00 -34.16 283.04 -7.28 -41.44 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -5.26 Total: 1.61 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: -1.29 Total: -10.00 kcal Atomic # 7 Polarization: -43.92 SS G_CDS: -0.07 Total: -43.99 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.09 Total: -10.09 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -34.16 -7.28 -41.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042223502.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.904 kcal (2) G-P(sol) polarization free energy of solvation -34.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds