Wall clock time and date at job start Sun Mar 29 2020 22:46:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99717 * 2 1 4 4 H 1.48499 * 109.46967 * 269.99384 * 3 2 1 5 5 H 1.48494 * 109.47431 * 29.99872 * 3 2 1 6 6 H 1.48504 * 109.46857 * 149.99870 * 3 2 1 7 7 C 1.37875 * 119.99985 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99941 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99857 * 359.72866 * 7 2 1 10 10 N 1.46901 * 109.47025 * 174.99821 * 9 7 2 11 11 C 1.46846 * 110.99940 * 300.69388 * 10 9 7 12 12 C 1.53043 * 109.52705 * 185.84048 * 11 10 9 13 13 C 1.53119 * 109.27293 * 300.82276 * 12 11 10 14 14 C 1.53004 * 109.56947 * 177.59059 * 13 12 11 15 15 C 1.50696 * 109.47252 * 65.28368 * 14 13 12 16 16 N 1.34782 * 120.00086 * 179.97438 * 15 14 13 17 17 O 1.21280 * 120.00341 * 0.02562 * 15 14 13 18 18 C 1.53117 * 109.16405 * 57.65542 * 13 12 11 19 19 C 1.46846 * 111.00467 * 64.90491 * 10 9 7 20 20 H 0.97005 * 120.00330 * 0.02562 * 1 2 3 21 21 H 1.09006 * 109.47380 * 294.99570 * 9 7 2 22 22 H 1.09000 * 109.47417 * 54.99673 * 9 7 2 23 23 H 1.08998 * 109.46431 * 305.85781 * 11 10 9 24 24 H 1.09001 * 109.46282 * 65.82305 * 11 10 9 25 25 H 1.08994 * 109.50185 * 180.87989 * 12 11 10 26 26 H 1.08996 * 109.49882 * 60.75716 * 12 11 10 27 27 H 1.08997 * 109.52509 * 297.74499 * 13 12 11 28 28 H 1.09003 * 109.46693 * 185.28318 * 14 13 12 29 29 H 1.08996 * 109.47321 * 305.27862 * 14 13 12 30 30 H 0.97000 * 119.99692 * 359.97438 * 16 15 14 31 31 H 0.96996 * 120.00220 * 180.02562 * 16 15 14 32 32 H 1.09002 * 109.50148 * 182.40235 * 18 13 12 33 33 H 1.08998 * 109.50646 * 62.28511 * 18 13 12 34 34 H 1.09006 * 109.45826 * 294.17926 * 19 10 9 35 35 H 1.09003 * 109.46067 * 54.15415 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0073 10 7 2.2006 -3.6133 -0.1142 11 6 2.9779 -3.5093 -1.3557 12 6 3.8489 -4.7570 -1.5200 13 6 4.7877 -4.8800 -0.3166 14 6 5.6198 -6.1576 -0.4443 15 6 6.5293 -6.0472 -1.6408 16 7 7.3607 -7.0617 -1.9512 17 8 6.5140 -5.0452 -2.3239 18 6 3.9548 -4.9380 0.9669 19 6 3.0808 -3.6851 1.0590 20 1 -0.4851 0.8401 -0.0004 21 1 0.6971 -2.5940 0.9413 22 1 0.5554 -2.5214 -0.8316 23 1 2.2984 -3.4265 -2.2039 24 1 3.6142 -2.6253 -1.3128 25 1 4.4373 -4.6722 -2.4335 26 1 3.2125 -5.6400 -1.5768 27 1 5.4507 -4.0155 -0.2819 28 1 6.2189 -6.2925 0.4563 29 1 4.9557 -7.0127 -0.5704 30 1 7.3738 -7.8627 -1.4042 31 1 7.9464 -6.9905 -2.7211 32 1 4.6190 -4.9826 1.8300 33 1 3.3201 -5.8239 0.9492 34 1 3.7166 -2.8002 1.0906 35 1 2.4759 -3.7302 1.9646 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042247874.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:14 Heat of formation + Delta-G solvation = -83.885319 kcal Electronic energy + Delta-G solvation = -16045.179032 eV Core-core repulsion = 13461.857852 eV Total energy + Delta-G solvation = -2583.321180 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.84658 -39.41976 -35.87965 -34.57288 -34.15887 -31.59132 -30.29597 -27.80983 -25.03380 -23.89522 -22.73894 -21.17253 -20.54404 -18.51252 -18.09683 -17.48851 -16.93726 -16.17339 -15.91222 -15.77694 -15.24545 -15.05028 -14.63729 -14.33807 -13.77269 -13.28476 -13.20125 -12.99346 -12.87007 -12.61950 -12.25387 -12.03670 -11.96787 -11.82906 -11.47896 -11.37359 -11.01632 -10.68455 -10.62890 -10.47669 -9.01852 -8.17248 -6.37632 1.32898 1.33859 1.44585 1.77715 2.34644 2.74660 3.06060 3.42387 3.86269 3.96501 4.02709 4.30393 4.47482 4.56175 4.64866 4.75638 4.78137 4.87199 5.04046 5.06393 5.17141 5.17399 5.27078 5.31254 5.34726 5.42574 5.60684 5.72707 6.01589 6.05832 6.27209 6.59558 6.59631 6.84103 7.33656 7.49736 8.84510 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.040414 B = 0.006281 C = 0.005889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.664487 B = 4457.085793 C = 4753.133566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.012 3.988 3 Si 0.956 3.044 4 H -0.275 1.275 5 H -0.275 1.275 6 H -0.270 1.270 7 C -0.558 4.558 8 H 0.050 0.950 9 C 0.197 3.803 10 N -0.537 5.537 11 C 0.069 3.931 12 C -0.102 4.102 13 C -0.071 4.071 14 C -0.126 4.126 15 C 0.508 3.492 16 N -0.840 5.840 17 O -0.593 6.593 18 C -0.097 4.097 19 C 0.058 3.942 20 H 0.266 0.734 21 H 0.007 0.993 22 H 0.004 0.996 23 H 0.045 0.955 24 H 0.006 0.994 25 H 0.066 0.934 26 H 0.072 0.928 27 H 0.045 0.955 28 H 0.125 0.875 29 H 0.122 0.878 30 H 0.419 0.581 31 H 0.403 0.597 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.008 0.992 35 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.854 -16.775 0.707 21.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.187 4.187 3 Si 0.781 3.219 4 H -0.201 1.201 5 H -0.200 1.200 6 H -0.195 1.195 7 C -0.597 4.597 8 H 0.068 0.932 9 C 0.070 3.930 10 N -0.261 5.261 11 C -0.059 4.059 12 C -0.140 4.140 13 C -0.090 4.090 14 C -0.165 4.165 15 C 0.294 3.706 16 N -0.404 5.404 17 O -0.474 6.474 18 C -0.135 4.135 19 C -0.070 4.070 20 H 0.075 0.925 21 H 0.025 0.975 22 H 0.022 0.978 23 H 0.064 0.936 24 H 0.024 0.976 25 H 0.084 0.916 26 H 0.091 0.909 27 H 0.063 0.937 28 H 0.143 0.857 29 H 0.140 0.860 30 H 0.250 0.750 31 H 0.234 0.766 32 H 0.107 0.893 33 H 0.101 0.899 34 H 0.026 0.974 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 13.284 -16.428 0.390 21.130 hybrid contribution 0.630 1.895 -0.261 2.014 sum 13.913 -14.533 0.130 20.120 Atomic orbital electron populations 1.70059 1.07454 1.27910 1.51067 1.25807 0.95664 1.02777 0.94467 0.85586 0.78677 0.79228 0.78397 1.20081 1.19978 1.19486 1.21967 0.93136 0.93262 1.51308 0.93201 1.19429 0.91400 0.86937 0.95205 1.62428 1.17765 1.43554 1.02362 1.21802 0.95043 0.96841 0.92248 1.21668 0.96588 0.96914 0.98811 1.20878 0.95781 0.97306 0.95050 1.21714 0.98170 0.99728 0.96933 1.21202 0.80652 0.82355 0.86348 1.43763 1.42410 1.20156 1.34095 1.90745 1.69621 1.32649 1.54336 1.21619 0.97448 0.97247 0.97142 1.21972 0.94624 0.97221 0.93195 0.92496 0.97522 0.97790 0.93645 0.97586 0.91562 0.90934 0.93668 0.85697 0.86023 0.74975 0.76626 0.89310 0.89859 0.97353 0.92090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.08 13.29 21.45 0.28 -56.80 16 2 C 0.01 0.72 5.46 84.65 0.46 1.18 16 3 Si 0.96 46.15 29.54 68.60 2.03 48.18 16 4 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 5 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 7 C -0.56 -32.97 7.72 25.60 0.20 -32.77 16 8 H 0.05 2.97 5.86 -2.91 -0.02 2.95 16 9 C 0.20 11.06 5.12 85.56 0.44 11.50 16 10 N -0.54 -24.77 4.86 -900.92 -4.38 -29.15 16 11 C 0.07 3.07 5.03 86.33 0.43 3.50 16 12 C -0.10 -3.48 5.09 30.65 0.16 -3.32 16 13 C -0.07 -2.01 1.89 -10.71 -0.02 -2.03 16 14 C -0.13 -2.18 5.18 29.85 0.15 -2.03 16 15 C 0.51 10.91 7.83 87.65 0.69 11.59 16 16 N -0.84 -9.64 8.87 -173.53 -1.54 -11.18 16 17 O -0.59 -19.77 14.83 -3.03 -0.04 -19.82 16 18 C -0.10 -2.67 5.38 30.64 0.16 -2.50 16 19 C 0.06 2.32 5.12 86.32 0.44 2.77 16 20 H 0.27 15.37 8.31 -92.70 -0.77 14.60 16 21 H 0.01 0.39 8.08 -2.38 -0.02 0.37 16 22 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 23 H 0.04 2.10 8.12 -2.39 -0.02 2.08 16 24 H 0.01 0.29 6.73 -2.39 -0.02 0.28 16 25 H 0.07 2.39 6.04 -2.39 -0.01 2.38 16 26 H 0.07 2.22 8.14 -2.39 -0.02 2.21 16 27 H 0.04 1.54 7.95 -2.39 -0.02 1.52 16 28 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.42 1.55 8.83 -92.71 -0.82 0.73 16 31 H 0.40 4.30 8.93 -92.71 -0.83 3.47 16 32 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.01 0.37 6.86 -2.38 -0.02 0.35 16 35 H 0.06 2.42 8.08 -2.39 -0.02 2.40 16 Total: -1.00 -75.81 279.18 -1.09 -76.89 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: -0.55 Total: 3.98 kcal Atomic # 6 Polarization: -15.23 SS G_CDS: 3.12 Total: -12.11 kcal Atomic # 7 Polarization: -91.49 SS G_CDS: -5.63 Total: -97.13 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: -0.04 Total: -19.82 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -75.81 -1.09 -76.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042247874.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.992 kcal (2) G-P(sol) polarization free energy of solvation -75.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds