Wall clock time and date at job start Sun Mar 29 2020 22:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46505 * 119.99928 * 2 1 4 4 C 1.50706 * 109.46585 * 269.99718 * 3 2 1 5 5 O 1.21275 * 120.00404 * 0.02562 * 4 3 2 6 6 N 1.34779 * 119.99413 * 180.02562 * 4 3 2 7 7 C 1.46506 * 119.99461 * 180.02562 * 6 4 3 8 8 C 1.53001 * 117.49681 * 223.62047 * 7 6 4 9 9 C 1.52999 * 59.99986 * 252.51359 * 8 7 6 10 10 C 1.34773 * 120.00219 * 179.97438 * 2 1 3 11 11 O 1.21691 * 120.00319 * 180.02562 * 10 2 1 12 12 C 1.46377 * 120.00114 * 359.97438 * 10 2 1 13 13 H 1.07997 * 119.99415 * 0.02562 * 12 10 2 14 14 C 1.40045 * 120.00241 * 180.02562 * 12 10 2 15 15 N 1.30669 * 119.99849 * 0.02562 * 14 12 10 16 16 Si 1.86802 * 119.99885 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.46965 * 60.00205 * 16 14 12 18 18 H 1.48499 * 109.46904 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47005 * 299.99653 * 16 14 12 20 20 H 1.08997 * 109.46884 * 90.00522 * 1 2 3 21 21 H 1.09004 * 109.46940 * 210.00453 * 1 2 3 22 22 H 1.08998 * 109.47393 * 330.00164 * 1 2 3 23 23 H 1.08994 * 109.47435 * 150.00170 * 3 2 1 24 24 H 1.08994 * 109.47204 * 29.99773 * 3 2 1 25 25 H 0.96995 * 120.00725 * 0.02562 * 6 4 3 26 26 H 1.08998 * 115.55053 * 9.32545 * 7 6 4 27 27 H 1.09004 * 117.49834 * 359.97438 * 8 7 6 28 28 H 1.08997 * 117.49999 * 145.01929 * 8 7 6 29 29 H 1.08998 * 117.49443 * 252.51298 * 9 8 7 30 30 H 1.08998 * 117.52032 * 107.48340 * 9 8 7 31 31 H 0.97006 * 119.99893 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7037 -1.4209 5 8 2.0542 1.0214 -2.3427 6 7 3.1116 2.8510 -1.6672 7 6 3.3553 3.2741 -3.0485 8 6 4.7471 3.8114 -3.3876 9 6 3.5568 4.7690 -3.3043 10 6 2.1389 -1.1671 0.0005 11 8 3.3558 -1.1672 0.0010 12 6 1.4071 -2.4349 0.0017 13 1 0.3271 -2.4348 0.0017 14 6 2.1073 -3.6477 0.0027 15 7 3.4140 -3.6476 0.0032 16 14 1.1733 -5.2654 0.0035 17 1 0.3201 -5.3449 -1.2093 18 1 2.1383 -6.3941 0.0040 19 1 0.3192 -5.3433 1.2157 20 1 -0.3633 -0.0001 -1.0277 21 1 -0.3633 -0.8900 0.5139 22 1 -0.3634 0.8900 0.5138 23 1 3.1499 1.1385 0.5138 24 1 1.6084 2.0284 0.5138 25 1 3.4274 3.3966 -0.9300 26 1 2.8375 2.6975 -3.8150 27 1 5.4814 3.8506 -2.5829 28 1 5.1454 3.5884 -4.3774 29 1 3.1719 5.1759 -4.2393 30 1 3.5076 5.4378 -2.4450 31 1 3.8990 -4.4877 0.0044 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044415462.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:30 Heat of formation + Delta-G solvation = -38.750899 kcal Electronic energy + Delta-G solvation = -15539.621582 eV Core-core repulsion = 12822.424483 eV Total energy + Delta-G solvation = -2717.197099 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.42292 -37.56580 -36.51658 -33.69696 -32.51137 -32.39518 -28.49065 -25.95302 -24.72922 -22.43652 -21.99615 -20.47329 -19.11307 -16.83742 -16.54377 -16.24429 -15.58212 -14.70707 -14.53339 -14.19602 -13.84215 -13.74812 -12.81408 -12.40078 -12.31061 -11.67628 -11.57573 -11.43819 -11.38909 -11.13661 -10.97833 -10.84560 -10.53398 -10.23719 -10.11057 -9.43571 -8.79361 -8.51646 -7.59154 -7.24993 -6.15224 -4.59440 3.11070 3.19514 3.23849 3.25658 3.34696 3.95771 4.13482 4.60558 4.61648 4.78933 4.95582 4.97996 5.27399 5.52720 5.64390 5.77596 5.85913 5.98409 6.00642 6.05884 6.08419 6.50823 6.64507 6.76390 7.49308 7.52723 7.82038 8.13992 8.35031 8.75571 9.06567 9.42283 10.61013 10.79802 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.046502 B = 0.006276 C = 0.005959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.978641 B = 4460.411151 C = 4697.446270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.630 5.630 3 C 0.111 3.889 4 C 0.497 3.503 5 O -0.519 6.519 6 N -0.714 5.714 7 C 0.087 3.913 8 C -0.197 4.197 9 C -0.194 4.194 10 C 0.561 3.439 11 O -0.577 6.577 12 C -0.539 4.539 13 H 0.073 0.927 14 C 0.087 3.913 15 N -0.768 5.768 16 Si 0.908 3.092 17 H -0.267 1.267 18 H -0.281 1.281 19 H -0.267 1.267 20 H 0.035 0.965 21 H 0.075 0.925 22 H 0.039 0.961 23 H 0.103 0.897 24 H 0.084 0.916 25 H 0.397 0.603 26 H 0.134 0.866 27 H 0.096 0.904 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.311 13.238 -1.385 13.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.367 5.367 3 C -0.017 4.017 4 C 0.283 3.717 5 O -0.392 6.392 6 N -0.367 5.367 7 C -0.019 4.019 8 C -0.236 4.236 9 C -0.233 4.233 10 C 0.368 3.632 11 O -0.459 6.459 12 C -0.575 4.575 13 H 0.091 0.909 14 C -0.133 4.133 15 N -0.396 5.396 16 Si 0.733 3.267 17 H -0.192 1.192 18 H -0.206 1.206 19 H -0.192 1.192 20 H 0.054 0.946 21 H 0.093 0.907 22 H 0.058 0.942 23 H 0.121 0.879 24 H 0.102 0.898 25 H 0.231 0.769 26 H 0.152 0.848 27 H 0.114 0.886 28 H 0.117 0.883 29 H 0.117 0.883 30 H 0.113 0.887 31 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.796 12.541 -2.027 12.830 hybrid contribution -0.257 -0.320 0.180 0.449 sum -2.053 12.221 -1.847 12.529 Atomic orbital electron populations 1.21435 0.81601 1.00943 1.00094 1.47727 1.05341 1.04058 1.79563 1.20878 1.00273 0.89026 0.91567 1.22086 0.76511 0.79303 0.93790 1.90672 1.49736 1.52401 1.46394 1.45558 1.59715 1.25021 1.06362 1.21509 0.98886 0.94827 0.86713 1.23398 0.92388 1.04371 1.03465 1.23348 1.03213 0.93240 1.03459 1.18242 0.86942 0.82113 0.75919 1.90584 1.14058 1.86082 1.55209 1.20935 0.93684 0.89060 1.53839 0.90926 1.25742 0.94630 1.00332 0.92592 1.70017 1.07095 1.27347 1.35188 0.86425 0.79835 0.80992 0.79466 1.19227 1.20570 1.19227 0.94632 0.90687 0.94178 0.87927 0.89769 0.76901 0.84844 0.88564 0.88289 0.88267 0.88705 0.92091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.02 10.19 59.84 0.61 2.63 16 2 N -0.63 -14.95 2.36 -184.63 -0.44 -15.39 16 3 C 0.11 2.14 5.93 -5.19 -0.03 2.11 16 4 C 0.50 9.85 7.90 -10.98 -0.09 9.77 16 5 O -0.52 -12.84 16.00 5.56 0.09 -12.75 16 6 N -0.71 -10.53 5.57 -53.80 -0.30 -10.83 16 7 C 0.09 1.20 6.43 -67.93 -0.44 0.76 16 8 C -0.20 -2.20 10.46 -26.73 -0.28 -2.48 16 9 C -0.19 -1.91 10.45 -26.73 -0.28 -2.19 16 10 C 0.56 16.62 7.61 -12.99 -0.10 16.52 16 11 O -0.58 -19.12 14.60 5.20 0.08 -19.04 16 12 C -0.54 -15.70 8.74 -35.63 -0.31 -16.01 16 13 H 0.07 1.93 5.99 -52.49 -0.31 1.61 16 14 C 0.09 2.49 5.50 -17.37 -0.10 2.39 16 15 N -0.77 -23.61 11.83 55.55 0.66 -22.95 16 16 Si 0.91 20.64 29.56 -169.99 -5.02 15.62 16 17 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 18 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 19 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 20 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 21 H 0.07 1.47 6.09 -51.93 -0.32 1.16 16 22 H 0.04 0.62 7.89 -51.93 -0.41 0.21 16 23 H 0.10 2.06 7.42 -51.93 -0.39 1.67 16 24 H 0.08 1.21 7.89 -51.93 -0.41 0.80 16 25 H 0.40 4.45 8.83 -40.82 -0.36 4.09 16 26 H 0.13 2.10 7.40 -51.93 -0.38 1.71 16 27 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 29 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.27 7.49 8.29 -40.82 -0.34 7.15 16 LS Contribution 274.96 15.07 4.14 4.14 Total: -1.00 -38.15 274.96 -5.63 -43.78 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -3.83 Total: 3.92 kcal Atomic # 6 Polarization: 14.51 SS G_CDS: -1.01 Total: 13.50 kcal Atomic # 7 Polarization: -49.09 SS G_CDS: -0.08 Total: -49.17 kcal Atomic # 8 Polarization: -31.96 SS G_CDS: 0.16 Total: -31.80 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -38.15 -5.63 -43.78 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044415462.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.032 kcal (2) G-P(sol) polarization free energy of solvation -38.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds