Wall clock time and date at job start Sun Mar 29 2020 22:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99977 * 2 1 4 4 H 1.48497 * 109.47089 * 85.92109 * 3 2 1 5 5 H 1.48508 * 109.46879 * 205.92300 * 3 2 1 6 6 H 1.48503 * 109.47005 * 325.91919 * 3 2 1 7 7 C 1.37875 * 119.99778 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00522 * 3.12994 * 7 2 1 9 9 C 1.50705 * 119.99697 * 183.13836 * 7 2 1 10 10 C 1.52992 * 115.55018 * 271.94066 * 9 7 2 11 11 S 1.81404 * 109.47158 * 294.35433 * 10 9 7 12 12 C 1.81399 * 102.99881 * 185.07364 * 11 10 9 13 13 C 1.54266 * 110.03430 * 292.16625 * 12 11 10 14 14 C 1.54890 * 104.19575 * 217.10473 * 13 12 11 15 15 C 1.54895 * 102.74924 * 37.94303 * 14 13 12 16 16 C 1.53879 * 110.03251 * 174.99767 * 12 11 10 17 17 C 1.53001 * 117.49830 * 126.27251 * 9 7 2 18 18 C 1.52995 * 117.49964 * 57.61189 * 9 7 2 19 19 H 0.97001 * 119.99836 * 359.97438 * 1 2 3 20 20 H 1.09006 * 109.47524 * 54.35303 * 10 9 7 21 21 H 1.09001 * 109.47590 * 174.35401 * 10 9 7 22 22 H 1.09001 * 110.01862 * 53.61065 * 12 11 10 23 23 H 1.09000 * 110.48409 * 335.78549 * 13 12 11 24 24 H 1.09006 * 110.48689 * 98.43197 * 13 12 11 25 25 H 1.08995 * 110.76116 * 279.62737 * 14 13 12 26 26 H 1.08999 * 110.91571 * 156.33097 * 14 13 12 27 27 H 1.08997 * 110.48439 * 203.37819 * 15 14 13 28 28 H 1.08998 * 110.59498 * 80.79087 * 15 14 13 29 29 H 1.08998 * 110.03480 * 238.56840 * 16 12 11 30 30 H 1.09005 * 110.03028 * 359.95777 * 16 12 11 31 31 H 1.09000 * 117.49770 * 359.97438 * 17 9 7 32 32 H 1.08995 * 117.50071 * 145.01881 * 17 9 7 33 33 H 1.09005 * 117.50144 * 214.97866 * 18 9 7 34 34 H 1.08999 * 117.50194 * 359.97438 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4104 2.0962 1.3965 5 1 3.5872 1.4168 -0.6121 6 1 1.4924 2.6262 -0.7846 7 6 2.0045 -1.1941 -0.0005 8 1 1.4658 -2.1286 -0.0520 9 6 3.5099 -1.1951 0.0709 10 6 4.2343 -1.1104 -1.2739 11 16 3.9030 -2.6129 -2.2349 12 6 4.9521 -2.4001 -3.6994 13 6 4.4265 -1.2334 -4.5610 14 6 4.6574 -1.7036 -6.0187 15 6 4.3276 -3.2153 -5.9466 16 6 4.8892 -3.6602 -4.5804 17 6 4.1642 -2.0286 1.1746 18 6 4.1607 -0.5007 1.2689 19 1 -0.4850 0.8401 0.0004 20 1 3.8770 -0.2405 -1.8251 21 1 5.3069 -1.0172 -1.1037 22 1 5.9812 -2.2074 -3.3964 23 1 3.3646 -1.0710 -4.3762 24 1 4.9933 -0.3245 -4.3591 25 1 5.6948 -1.5482 -6.3149 26 1 3.9810 -1.1929 -6.7040 27 1 4.8222 -3.7526 -6.7557 28 1 3.2501 -3.3749 -5.9864 29 1 5.8880 -4.0785 -4.7056 30 1 4.2290 -4.3999 -4.1275 31 1 3.5058 -2.5759 1.8492 32 1 5.1109 -2.5163 0.9427 33 1 5.1053 0.0161 1.0990 34 1 3.5002 -0.0429 2.0052 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083862474.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:09 Heat of formation + Delta-G solvation = -11.960026 kcal Electronic energy + Delta-G solvation = -13745.319913 eV Core-core repulsion = 11575.577768 eV Total energy + Delta-G solvation = -2169.742145 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 226.109 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.73723 -38.64515 -34.23081 -30.17494 -29.63912 -29.19614 -27.42077 -23.31763 -21.62589 -21.57410 -20.71109 -18.41003 -17.46851 -16.87691 -16.61483 -15.80257 -15.50403 -14.89539 -14.74702 -14.60903 -14.28914 -13.69584 -13.20756 -12.93842 -12.59877 -12.43219 -12.11995 -12.03766 -11.96633 -11.89577 -11.76326 -11.59147 -11.42140 -10.94562 -10.69937 -10.53162 -10.10715 -8.41249 -8.27471 -6.34173 0.91838 1.33706 1.35768 1.48203 1.93006 2.36799 3.06267 3.26059 3.59240 3.65966 3.99046 4.07611 4.26671 4.39366 4.44175 4.45283 4.50305 4.51633 4.64192 4.72464 4.79797 4.83371 4.90699 5.04667 5.05850 5.19198 5.23336 5.30510 5.33656 5.46002 5.47147 5.69860 6.31894 6.72988 7.34095 8.88634 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.031037 B = 0.008600 C = 0.007834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.939740 B = 3255.029350 C = 3573.171324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.019 3.981 3 Si 0.939 3.061 4 H -0.269 1.269 5 H -0.231 1.231 6 H -0.298 1.298 7 C -0.475 4.475 8 H 0.026 0.974 9 C -0.015 4.015 10 C -0.029 4.029 11 S -0.287 6.287 12 C -0.060 4.060 13 C -0.126 4.126 14 C -0.113 4.113 15 C -0.120 4.120 16 C -0.099 4.099 17 C -0.160 4.160 18 C -0.185 4.185 19 H 0.264 0.736 20 H 0.060 0.940 21 H 0.081 0.919 22 H 0.092 0.908 23 H 0.053 0.947 24 H 0.069 0.931 25 H 0.085 0.915 26 H 0.073 0.927 27 H 0.090 0.910 28 H 0.056 0.944 29 H 0.093 0.907 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.104 0.896 33 H 0.106 0.894 34 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.439 -1.995 -9.826 17.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.178 4.178 3 Si 0.763 3.237 4 H -0.195 1.195 5 H -0.154 1.154 6 H -0.225 1.225 7 C -0.512 4.512 8 H 0.044 0.956 9 C -0.016 4.016 10 C -0.177 4.177 11 S -0.058 6.058 12 C -0.188 4.188 13 C -0.166 4.166 14 C -0.152 4.152 15 C -0.158 4.158 16 C -0.138 4.138 17 C -0.197 4.197 18 C -0.224 4.224 19 H 0.073 0.927 20 H 0.079 0.921 21 H 0.099 0.901 22 H 0.111 0.889 23 H 0.072 0.928 24 H 0.088 0.912 25 H 0.104 0.896 26 H 0.092 0.908 27 H 0.109 0.891 28 H 0.074 0.926 29 H 0.112 0.888 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.122 0.878 33 H 0.124 0.876 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 13.613 -2.762 -9.568 16.866 hybrid contribution 0.145 1.737 0.183 1.753 sum 13.758 -1.025 -9.385 16.685 Atomic orbital electron populations 1.70060 1.08383 1.27905 1.52714 1.25830 0.95233 1.02851 0.93868 0.85884 0.80444 0.78532 0.78834 1.19456 1.15374 1.22498 1.20305 0.88977 0.92488 1.49471 0.95561 1.18937 0.92652 1.03485 0.86554 1.23000 1.00817 0.96097 0.97779 1.87277 1.62676 1.31771 1.24053 1.23926 0.99974 1.00032 0.94912 1.22792 1.00706 0.96876 0.96208 1.22472 1.02500 0.95634 0.94575 1.22359 1.00785 0.96197 0.96410 1.21980 1.02491 0.94809 0.94477 1.22839 1.01635 0.92651 1.02595 1.23099 1.01901 0.95690 1.01698 0.92673 0.92143 0.90052 0.88948 0.92824 0.91250 0.89646 0.90823 0.89141 0.92551 0.88845 0.92421 0.90716 0.87809 0.87600 0.90570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.62 13.96 21.45 0.30 -60.32 16 2 C 0.02 1.12 5.47 84.65 0.46 1.59 16 3 Si 0.94 44.47 24.92 68.60 1.71 46.17 16 4 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 5 H -0.23 -9.78 5.69 99.48 0.57 -9.21 16 6 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 7 C -0.47 -27.53 9.09 25.60 0.23 -27.30 16 8 H 0.03 1.75 8.06 -2.91 -0.02 1.73 16 9 C -0.01 -0.67 0.77 -52.93 -0.04 -0.71 16 10 C -0.03 -1.16 5.27 71.98 0.38 -0.78 16 11 S -0.29 -11.29 20.39 -56.49 -1.15 -12.44 16 12 C -0.06 -1.68 3.42 31.32 0.11 -1.57 16 13 C -0.13 -3.42 6.26 31.67 0.20 -3.22 16 14 C -0.11 -2.26 6.91 31.89 0.22 -2.04 16 15 C -0.12 -2.41 6.83 31.67 0.22 -2.20 16 16 C -0.10 -2.31 6.48 31.32 0.20 -2.11 16 17 C -0.16 -6.39 9.96 30.62 0.30 -6.09 16 18 C -0.18 -7.38 7.56 30.62 0.23 -7.15 16 19 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 20 H 0.06 2.57 6.72 -2.39 -0.02 2.55 16 21 H 0.08 2.78 8.09 -2.39 -0.02 2.76 16 22 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 23 H 0.05 1.78 7.81 -2.39 -0.02 1.76 16 24 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 25 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.06 1.56 7.60 -2.38 -0.02 1.54 16 31 H 0.07 3.15 8.14 -2.39 -0.02 3.13 16 32 H 0.10 3.54 8.14 -2.39 -0.02 3.52 16 33 H 0.11 3.52 8.14 -2.38 -0.02 3.50 16 34 H 0.08 3.25 7.26 -2.39 -0.02 3.23 16 Total: -1.00 -66.88 282.45 4.27 -62.60 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: 0.90 Total: 15.57 kcal Atomic # 6 Polarization: -54.10 SS G_CDS: 2.52 Total: -51.59 kcal Atomic # 7 Polarization: -60.62 SS G_CDS: 0.30 Total: -60.32 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 1.71 Total: 46.17 kcal Atomic # 16 Polarization: -11.29 SS G_CDS: -1.15 Total: -12.44 kcal Total: -66.88 4.27 -62.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083862474.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.643 kcal (2) G-P(sol) polarization free energy of solvation -66.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds