Wall clock time and date at job start Sun Mar 29 2020 22:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34137 * 118.70249 * 2 1 4 4 O 1.21222 * 119.36436 * 0.53036 * 3 2 1 5 5 C 1.50588 * 121.27719 * 180.54527 * 3 2 1 6 6 C 1.53267 * 109.15980 * 330.89449 * 5 3 2 7 7 C 1.53244 * 108.55855 * 55.62046 * 6 5 3 8 8 H 1.09001 * 109.56892 * 64.31513 * 7 6 5 9 9 N 1.46898 * 109.52352 * 184.47198 * 7 6 5 10 10 C 1.46906 * 110.99888 * 204.68650 * 9 7 6 11 11 C 1.50699 * 109.47140 * 179.97438 * 10 9 7 12 12 H 1.08003 * 119.99962 * 359.97438 * 11 10 9 13 13 C 1.37873 * 119.99861 * 180.02562 * 11 10 9 14 14 N 1.31522 * 120.00244 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99980 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.46950 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47074 * 119.99839 * 15 13 11 18 18 H 1.48505 * 109.46997 * 239.99833 * 15 13 11 19 19 C 1.34141 * 118.70446 * 179.97438 * 2 1 3 20 20 O 1.21224 * 119.36212 * 359.47661 * 19 2 1 21 21 H 1.09001 * 109.46830 * 270.01644 * 1 2 3 22 22 H 1.09001 * 109.47073 * 30.02268 * 1 2 3 23 23 H 1.09000 * 109.47338 * 150.01884 * 1 2 3 24 24 H 1.08998 * 109.52768 * 90.79059 * 5 3 2 25 25 H 1.09000 * 109.52754 * 210.98409 * 5 3 2 26 26 H 1.09001 * 109.63524 * 295.89855 * 6 5 3 27 27 H 1.08999 * 109.61994 * 175.33895 * 6 5 3 28 28 H 1.00904 * 110.99913 * 328.63715 * 9 7 6 29 29 H 1.09004 * 109.47040 * 299.99934 * 10 9 7 30 30 H 1.09000 * 109.47033 * 59.99886 * 10 9 7 31 31 H 0.96992 * 120.00038 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1093 1.1766 0.0000 4 8 1.4681 2.2053 0.0098 5 6 3.6136 1.2442 -0.0122 6 6 4.1787 0.0000 0.6816 7 6 3.6136 -1.2442 -0.0119 8 1 3.9683 -1.2809 -1.0420 9 7 4.0567 -2.4486 0.7030 10 6 4.0603 -3.6176 -0.1868 11 6 4.5198 -4.8309 0.5797 12 1 4.7833 -4.7425 1.6234 13 6 4.6048 -6.0537 -0.0516 14 7 4.2844 -6.1613 -1.3226 15 14 5.1738 -7.5579 0.8987 16 1 5.4716 -7.1735 2.3019 17 1 4.1034 -8.5871 0.8835 18 1 6.3992 -8.1088 0.2661 19 6 2.1093 -1.1766 0.0005 20 8 1.4682 -2.2053 0.0106 21 1 -0.3633 0.0003 1.0277 22 1 -0.3633 0.8898 -0.5142 23 1 -0.3634 -0.8901 -0.5135 24 1 3.9683 1.2795 -1.0423 25 1 3.9424 2.1380 0.5180 26 1 3.8836 -0.0001 1.7309 27 1 5.2660 0.0000 0.6044 28 1 4.9651 -2.3084 1.1193 29 1 3.0530 -3.7876 -0.5673 30 1 4.7381 -3.4371 -1.0211 31 1 4.3446 -7.0214 -1.7668 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084407003.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:43 Heat of formation + Delta-G solvation = -92.225414 kcal Electronic energy + Delta-G solvation = -15786.494113 eV Core-core repulsion = 13066.978186 eV Total energy + Delta-G solvation = -2719.515928 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.62263 -39.95778 -37.59370 -36.34194 -35.13106 -33.54402 -29.61403 -28.66167 -27.07819 -24.41992 -23.80251 -23.36531 -19.47062 -18.62158 -18.39056 -18.04157 -17.57425 -16.67703 -16.26375 -15.70519 -15.50822 -15.40288 -14.92662 -14.30035 -14.17862 -13.88986 -13.62665 -13.41039 -13.11772 -13.06766 -12.65713 -12.40365 -12.09526 -11.90226 -11.38770 -11.22103 -11.05648 -10.79368 -10.65681 -9.22546 -8.20633 -6.30685 0.54695 1.41541 1.43539 1.53442 1.56659 1.80617 2.41449 2.96812 3.13750 3.43728 3.60134 3.73783 4.13199 4.19648 4.28305 4.36511 4.45874 4.46978 4.70737 4.83844 4.94760 5.04941 5.15945 5.32960 5.60290 5.95514 6.04997 6.38057 6.44223 6.70796 6.81752 6.91011 7.39379 8.91566 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.051861 B = 0.006287 C = 0.005893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.770993 B = 4452.559116 C = 4750.654578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.573 5.573 3 C 0.522 3.478 4 O -0.538 6.538 5 C -0.127 4.127 6 C -0.111 4.111 7 C 0.065 3.935 8 H 0.086 0.914 9 N -0.674 5.674 10 C 0.207 3.793 11 C -0.532 4.532 12 H 0.067 0.933 13 C -0.002 4.002 14 N -0.936 5.936 15 Si 0.973 3.027 16 H -0.260 1.260 17 H -0.284 1.284 18 H -0.274 1.274 19 C 0.520 3.480 20 O -0.520 6.520 21 H 0.073 0.927 22 H 0.097 0.903 23 H 0.076 0.924 24 H 0.135 0.865 25 H 0.145 0.855 26 H 0.086 0.914 27 H 0.126 0.874 28 H 0.355 0.645 29 H 0.004 0.996 30 H -0.030 1.030 31 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.899 15.413 2.642 15.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.316 5.316 3 C 0.315 3.685 4 O -0.414 6.414 5 C -0.167 4.167 6 C -0.149 4.149 7 C -0.049 4.049 8 H 0.103 0.897 9 N -0.308 5.308 10 C 0.080 3.920 11 C -0.570 4.570 12 H 0.085 0.915 13 C -0.199 4.199 14 N -0.577 5.577 15 Si 0.797 3.203 16 H -0.184 1.184 17 H -0.210 1.210 18 H -0.200 1.200 19 C 0.310 3.690 20 O -0.392 6.392 21 H 0.092 0.908 22 H 0.116 0.884 23 H 0.095 0.905 24 H 0.153 0.847 25 H 0.163 0.837 26 H 0.104 0.896 27 H 0.144 0.856 28 H 0.177 0.823 29 H 0.022 0.978 30 H -0.012 1.012 31 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.386 15.122 2.786 15.381 hybrid contribution 0.369 -1.069 -0.529 1.249 sum -0.017 14.053 2.257 14.233 Atomic orbital electron populations 1.21929 0.77913 1.04366 1.03919 1.46722 1.10343 1.07922 1.66644 1.21766 0.93087 0.81262 0.72384 1.90698 1.69850 1.33620 1.47198 1.22030 0.86376 1.01650 1.06614 1.21933 1.03877 0.88779 1.00287 1.21705 0.88836 0.94124 1.00225 0.89688 1.60109 1.34078 1.01697 1.34900 1.19328 0.94665 0.87834 0.90180 1.21572 1.43977 0.93962 0.97473 0.91531 1.25956 0.95584 1.02520 0.95886 1.70107 1.49887 1.25900 1.11756 0.85283 0.77743 0.78230 0.79000 1.18426 1.21032 1.19989 1.21706 0.92342 0.81954 0.73035 1.90737 1.69152 1.34694 1.44580 0.90801 0.88427 0.90545 0.84749 0.83734 0.89576 0.85551 0.82340 0.97769 1.01195 0.92756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.61 9.98 127.77 1.27 2.88 16 2 N -0.57 -16.59 2.93 -781.14 -2.29 -18.88 16 3 C 0.52 12.61 7.48 87.72 0.66 13.27 16 4 O -0.54 -15.37 16.45 -2.85 -0.05 -15.42 16 5 C -0.13 -1.86 6.07 29.90 0.18 -1.68 16 6 C -0.11 -1.98 5.36 30.77 0.16 -1.82 16 7 C 0.06 1.99 2.74 44.22 0.12 2.11 16 8 H 0.09 2.57 7.80 -2.39 -0.02 2.56 16 9 N -0.67 -27.04 6.10 -499.21 -3.05 -30.08 16 10 C 0.21 11.01 5.11 85.56 0.44 11.45 16 11 C -0.53 -30.31 9.32 25.60 0.24 -30.07 16 12 H 0.07 3.65 7.81 -2.91 -0.02 3.63 16 13 C 0.00 -0.10 5.46 84.65 0.46 0.37 16 14 N -0.94 -57.45 13.29 21.45 0.28 -57.16 16 15 Si 0.97 44.63 29.54 68.60 2.03 46.66 16 16 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 17 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 18 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 19 C 0.52 18.52 7.29 87.72 0.64 19.16 16 20 O -0.52 -24.19 14.46 -2.86 -0.04 -24.23 16 21 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 22 H 0.10 2.31 7.29 -2.39 -0.02 2.29 16 23 H 0.08 2.21 7.29 -2.39 -0.02 2.19 16 24 H 0.13 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.14 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.13 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.36 12.25 8.36 -89.69 -0.75 11.50 16 29 H 0.00 0.26 6.70 -2.38 -0.02 0.24 16 30 H -0.03 -1.63 8.06 -2.39 -0.02 -1.65 16 31 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -76.35 265.21 1.46 -74.89 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: 0.39 Total: 8.56 kcal Atomic # 6 Polarization: 11.50 SS G_CDS: 4.17 Total: 15.67 kcal Atomic # 7 Polarization: -101.07 SS G_CDS: -5.05 Total: -106.12 kcal Atomic # 8 Polarization: -39.56 SS G_CDS: -0.09 Total: -39.65 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -76.35 1.46 -74.89 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084407003.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.333 kcal (2) G-P(sol) polarization free energy of solvation -76.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds