Wall clock time and date at job start Sun Mar 29 2020 22:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21275 * 120.00493 * 2 1 4 4 N 1.34779 * 119.99912 * 180.02562 * 2 1 3 5 5 C 1.46497 * 120.00348 * 179.97438 * 4 2 1 6 6 H 1.09008 * 110.63818 * 31.85917 * 5 4 2 7 7 C 1.55155 * 110.72234 * 154.99656 * 5 4 2 8 8 C 1.54908 * 101.58178 * 154.04445 * 7 5 4 9 9 N 1.47425 * 104.83374 * 322.99393 * 8 7 5 10 10 C 1.34771 * 125.64924 * 204.09280 * 9 8 7 11 11 O 1.21688 * 120.00342 * 180.02562 * 10 9 8 12 12 C 1.46376 * 119.99829 * 0.02562 * 10 9 8 13 13 H 1.07997 * 120.00082 * 6.74571 * 12 10 9 14 14 C 1.40058 * 119.99900 * 186.74518 * 12 10 9 15 15 N 1.30669 * 120.00016 * 6.79602 * 14 12 10 16 16 Si 1.86800 * 119.99926 * 186.51771 * 14 12 10 17 17 H 1.48502 * 109.47195 * 265.29677 * 16 14 12 18 18 H 1.48498 * 109.47016 * 25.29915 * 16 14 12 19 19 H 1.48501 * 109.46741 * 145.29405 * 16 14 12 20 20 C 1.47021 * 108.70278 * 24.35190 * 9 8 7 21 21 H 1.09004 * 109.47002 * 239.99579 * 1 2 3 22 22 H 1.08999 * 109.46730 * 359.97438 * 1 2 3 23 23 H 1.09005 * 109.47729 * 119.99382 * 1 2 3 24 24 H 0.97007 * 119.99674 * 359.97438 * 4 2 1 25 25 H 1.09000 * 111.00545 * 35.97263 * 7 5 4 26 26 H 1.09001 * 111.03807 * 272.13587 * 7 5 4 27 27 H 1.09003 * 110.37022 * 204.15158 * 8 7 5 28 28 H 1.09003 * 110.45555 * 81.87887 * 8 7 5 29 29 H 0.96995 * 119.99942 * 179.72191 * 15 14 12 30 30 H 1.08998 * 109.87859 * 118.13256 * 20 9 8 31 31 H 1.08994 * 109.88720 * 239.29911 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6458 -1.1673 -0.0011 6 1 4.0303 -0.3010 0.5374 7 6 4.1950 -2.4827 0.6118 8 6 5.5809 -2.5894 -0.0718 9 7 5.3647 -2.0929 -1.4430 10 6 6.1153 -2.4035 -2.5184 11 8 5.8433 -1.9324 -3.6069 12 6 7.2577 -3.3077 -2.3770 13 1 7.4350 -3.8111 -1.4382 14 6 8.1208 -3.5200 -3.4594 15 7 7.9867 -2.8135 -4.5504 16 14 9.4687 -4.8079 -3.3405 17 1 10.7337 -4.1619 -2.9073 18 1 9.0776 -5.8437 -2.3509 19 1 9.6661 -5.4418 -4.6688 20 6 4.1984 -1.1977 -1.4418 21 1 -0.3633 -0.5139 0.8900 22 1 -0.3633 1.0277 0.0005 23 1 -0.3635 -0.5137 -0.8900 24 1 1.6957 -2.0073 -0.0005 25 1 3.5628 -3.3305 0.3478 26 1 4.2984 -2.3971 1.6935 27 1 5.9150 -3.6268 -0.0923 28 1 6.3103 -1.9669 0.4465 29 1 8.5870 -2.9577 -5.2985 30 1 4.5001 -0.1956 -1.7464 31 1 3.4367 -1.5803 -2.1210 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160251127.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:29 Heat of formation + Delta-G solvation = -76.076174 kcal Electronic energy + Delta-G solvation = -15535.086024 eV Core-core repulsion = 12816.270380 eV Total energy + Delta-G solvation = -2718.815644 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.77495 -38.13423 -35.90025 -33.71556 -32.50728 -30.57689 -29.16534 -27.95884 -25.86174 -22.70927 -20.96356 -20.50016 -19.11373 -17.11482 -16.64888 -16.17376 -15.50827 -15.14759 -14.65326 -14.21437 -13.63870 -13.28686 -12.88215 -12.83769 -12.64419 -12.26791 -11.95267 -11.51090 -11.31746 -11.22786 -11.11517 -10.89320 -10.59756 -10.27269 -10.18724 -9.84215 -9.01641 -8.85773 -7.65320 -7.23231 -6.24427 -4.65584 2.66369 3.12515 3.19060 3.22216 3.24759 4.07656 4.53890 4.57483 4.74743 4.88963 5.08735 5.16104 5.26071 5.29084 5.63508 5.70792 5.75254 5.79659 5.98533 6.26095 6.33276 6.44706 6.59303 6.69568 7.33781 7.42087 7.54461 8.07614 8.26202 8.38451 8.99850 9.45991 10.55465 10.73673 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.058136 B = 0.005932 C = 0.005577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.511945 B = 4719.282134 C = 5019.018716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.508 3.492 3 O -0.546 6.546 4 N -0.720 5.720 5 C 0.129 3.871 6 H 0.099 0.901 7 C -0.139 4.139 8 C 0.120 3.880 9 N -0.645 5.645 10 C 0.573 3.427 11 O -0.577 6.577 12 C -0.541 4.541 13 H 0.071 0.929 14 C 0.088 3.912 15 N -0.769 5.769 16 Si 0.909 3.091 17 H -0.272 1.272 18 H -0.264 1.264 19 H -0.278 1.278 20 C 0.109 3.891 21 H 0.086 0.914 22 H 0.090 0.910 23 H 0.088 0.912 24 H 0.401 0.599 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.052 0.948 29 H 0.270 0.730 30 H 0.054 0.946 31 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.611 -1.512 11.338 15.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.295 3.705 3 O -0.423 6.423 4 N -0.372 5.372 5 C 0.024 3.976 6 H 0.117 0.883 7 C -0.178 4.178 8 C -0.005 4.005 9 N -0.386 5.386 10 C 0.379 3.621 11 O -0.459 6.459 12 C -0.578 4.578 13 H 0.089 0.911 14 C -0.132 4.132 15 N -0.398 5.398 16 Si 0.733 3.267 17 H -0.198 1.198 18 H -0.188 1.188 19 H -0.204 1.204 20 C -0.016 4.016 21 H 0.104 0.896 22 H 0.109 0.891 23 H 0.106 0.894 24 H 0.235 0.765 25 H 0.094 0.906 26 H 0.097 0.903 27 H 0.093 0.907 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.208 -0.454 10.445 14.612 hybrid contribution 0.401 -1.053 0.081 1.130 sum -9.807 -1.507 10.526 14.465 Atomic orbital electron populations 1.21914 0.91866 1.05388 1.04134 1.20824 0.90558 0.83643 0.75489 1.90734 1.70852 1.31423 1.49311 1.46033 1.07093 1.08680 1.75366 1.22059 0.79090 0.99378 0.97071 0.88253 1.23092 0.98205 0.96536 0.99965 1.21867 0.94195 1.00133 0.84282 1.48714 1.31379 1.50219 1.08249 1.18071 0.81837 0.81347 0.80828 1.90609 1.72084 1.57719 1.25503 1.20868 1.10155 1.27543 0.99192 0.91101 1.25726 0.97554 0.95412 0.94491 1.69993 1.32777 1.33527 1.03496 0.86340 0.80908 0.81069 0.78355 1.19784 1.18789 1.20353 1.21850 0.89989 0.95328 0.94469 0.89568 0.89104 0.89376 0.76504 0.90613 0.90288 0.90698 0.92988 0.91964 0.92761 0.93075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.41 10.32 36.00 0.37 -1.04 16 2 C 0.51 6.74 7.94 -10.99 -0.09 6.65 16 3 O -0.55 -9.96 16.73 5.56 0.09 -9.87 16 4 N -0.72 -8.82 5.12 -52.03 -0.27 -9.09 16 5 C 0.13 1.98 3.30 -66.09 -0.22 1.76 16 6 H 0.10 1.63 7.55 -51.92 -0.39 1.23 16 7 C -0.14 -1.84 6.71 -24.58 -0.17 -2.01 16 8 C 0.12 2.14 6.56 -2.53 -0.02 2.12 16 9 N -0.64 -15.10 3.33 -172.17 -0.57 -15.67 16 10 C 0.57 16.81 7.75 -12.99 -0.10 16.71 16 11 O -0.58 -19.39 15.44 5.20 0.08 -19.31 16 12 C -0.54 -15.35 8.99 -35.63 -0.32 -15.67 16 13 H 0.07 1.82 6.60 -52.49 -0.35 1.48 16 14 C 0.09 2.47 5.48 -17.36 -0.10 2.37 16 15 N -0.77 -23.31 11.91 55.55 0.66 -22.65 16 16 Si 0.91 20.07 29.56 -169.99 -5.03 15.05 16 17 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 18 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 19 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 20 C 0.11 2.25 6.64 -3.06 -0.02 2.23 16 21 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 22 H 0.09 0.75 8.12 -51.93 -0.42 0.33 16 23 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.40 3.61 8.56 -40.82 -0.35 3.26 16 25 H 0.08 0.91 8.01 -51.93 -0.42 0.50 16 26 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.07 1.33 7.07 -51.93 -0.37 0.96 16 28 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.27 7.38 8.29 -40.82 -0.34 7.04 16 30 H 0.05 1.25 8.14 -51.93 -0.42 0.82 16 31 H 0.05 1.09 8.03 -51.93 -0.42 0.67 16 LS Contribution 270.05 15.07 4.07 4.07 Total: -1.00 -37.64 270.05 -5.57 -43.21 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -3.96 Total: 1.12 kcal Atomic # 6 Polarization: 13.79 SS G_CDS: -0.65 Total: 13.13 kcal Atomic # 7 Polarization: -47.23 SS G_CDS: -0.18 Total: -47.41 kcal Atomic # 8 Polarization: -29.35 SS G_CDS: 0.17 Total: -29.18 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.03 Total: 15.05 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -37.64 -5.57 -43.21 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160251127.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.863 kcal (2) G-P(sol) polarization free energy of solvation -37.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds