Wall clock time and date at job start Sun Mar 29 2020 22:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 119.99807 * 2 1 4 4 H 1.48495 * 109.47302 * 240.00153 * 3 2 1 5 5 H 1.48498 * 109.47189 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47047 * 120.00293 * 3 2 1 7 7 C 1.37873 * 120.00130 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00133 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99986 * 359.97438 * 7 2 1 10 10 S 1.81397 * 109.47084 * 180.02562 * 9 7 2 11 11 C 1.81400 * 103.00076 * 179.97438 * 10 9 7 12 12 H 1.08995 * 108.98385 * 303.86178 * 11 10 9 13 13 C 1.48591 * 108.99905 * 62.63481 * 11 10 9 14 14 C 1.28556 * 135.37258 * 120.42333 * 13 11 10 15 15 C 1.51153 * 123.03651 * 354.46648 * 14 13 11 16 16 C 1.53038 * 109.42419 * 80.93333 * 15 14 13 17 17 C 1.52070 * 111.27463 * 323.68224 * 16 15 14 18 18 C 1.51759 * 107.08926 * 281.82895 * 17 16 15 19 19 C 1.53039 * 111.30003 * 66.95968 * 18 17 16 20 20 H 0.97005 * 120.00311 * 359.97438 * 1 2 3 21 21 H 1.08997 * 109.46937 * 59.99939 * 9 7 2 22 22 H 1.09001 * 109.47022 * 300.00271 * 9 7 2 23 23 H 1.07999 * 112.31643 * 300.46013 * 13 11 10 24 24 H 1.07995 * 118.48255 * 174.44421 * 14 13 11 25 25 H 1.08994 * 109.47746 * 200.92058 * 15 14 13 26 26 H 1.09004 * 109.47768 * 320.95274 * 15 14 13 27 27 H 1.09002 * 109.11266 * 84.16095 * 16 15 14 28 28 H 1.09004 * 109.11571 * 203.21400 * 16 15 14 29 29 H 1.08992 * 109.85978 * 162.45927 * 17 16 15 30 30 H 1.08996 * 109.96768 * 41.25576 * 17 16 15 31 31 H 1.09002 * 109.10450 * 306.50997 * 18 17 16 32 32 H 1.08997 * 109.10203 * 187.40799 * 18 17 16 33 33 H 1.08997 * 109.70433 * 177.02481 * 19 18 17 34 34 H 1.08998 * 109.70904 * 297.65009 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 16 2.4298 -3.8779 -0.0005 11 6 1.3516 -5.3367 0.0003 12 1 0.6793 -5.2802 0.8563 13 6 0.5443 -5.3422 -1.2472 14 6 0.4013 -6.1451 -2.2409 15 6 1.2337 -7.3944 -2.4173 16 6 0.6633 -8.5136 -1.5432 17 6 0.1369 -7.9697 -0.2242 18 6 1.3391 -7.7267 0.6695 19 6 2.2160 -6.5961 0.1266 20 1 -0.4851 0.8401 0.0004 21 1 0.6240 -2.5567 -0.8903 22 1 0.6246 -2.5571 0.8897 23 1 -0.0698 -4.4589 -1.3422 24 1 -0.3484 -5.9167 -2.9839 25 1 1.2105 -7.7020 -3.4627 26 1 2.2627 -7.1904 -2.1209 27 1 -0.1502 -9.0043 -2.0775 28 1 1.4474 -9.2435 -1.3411 29 1 -0.5285 -8.6989 0.2378 30 1 -0.3956 -7.0339 -0.3935 31 1 1.9307 -8.6404 0.7279 32 1 0.9931 -7.4615 1.6685 33 1 3.0408 -6.4083 0.8139 34 1 2.6080 -6.8726 -0.8522 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591133723.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:02 Heat of formation + Delta-G solvation = -14.749224 kcal Electronic energy + Delta-G solvation = -13666.469000 eV Core-core repulsion = 11496.605907 eV Total energy + Delta-G solvation = -2169.863094 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 226.109 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.15119 -35.34195 -34.05627 -33.72149 -30.72594 -28.39936 -27.20097 -25.16511 -22.18431 -21.40124 -19.51048 -18.69387 -17.51108 -16.73657 -16.72188 -15.66107 -15.38882 -15.12035 -14.67195 -14.54816 -14.33915 -14.07631 -13.14935 -13.06140 -12.81073 -12.66842 -12.56143 -12.41669 -12.02143 -12.00469 -11.66050 -11.34467 -11.24847 -10.83589 -10.76429 -10.59211 -9.74544 -8.50478 -8.36151 -6.50455 0.78294 1.36897 1.41033 1.47616 1.56282 2.12165 2.34414 2.97777 3.59524 3.80210 4.03589 4.08356 4.20570 4.27065 4.33661 4.42291 4.62199 4.86863 4.88281 4.89413 4.98102 5.01867 5.09007 5.09852 5.21661 5.32120 5.36421 5.50362 5.52983 5.59808 5.71331 5.85429 6.01601 6.56792 7.17755 8.75761 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.054153 B = 0.006001 C = 0.005818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.932578 B = 4664.848309 C = 4811.611627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.014 3.986 3 Si 0.979 3.021 4 H -0.266 1.266 5 H -0.274 1.274 6 H -0.265 1.265 7 C -0.540 4.540 8 H 0.062 0.938 9 C 0.098 3.902 10 S -0.319 6.319 11 C 0.005 3.995 12 H 0.076 0.924 13 C -0.161 4.161 14 C -0.116 4.116 15 C -0.101 4.101 16 C -0.107 4.107 17 C -0.138 4.138 18 C -0.108 4.108 19 C -0.109 4.109 20 H 0.271 0.729 21 H 0.012 0.988 22 H 0.007 0.993 23 H 0.049 0.951 24 H 0.117 0.883 25 H 0.084 0.916 26 H 0.077 0.923 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.060 0.940 31 H 0.085 0.915 32 H 0.053 0.947 33 H 0.066 0.934 34 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.020 -16.759 -2.560 16.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.187 4.187 3 Si 0.802 3.198 4 H -0.190 1.190 5 H -0.199 1.199 6 H -0.190 1.190 7 C -0.578 4.578 8 H 0.080 0.920 9 C -0.050 4.050 10 S -0.086 6.086 11 C -0.123 4.123 12 H 0.094 0.906 13 C -0.181 4.181 14 C -0.138 4.138 15 C -0.138 4.138 16 C -0.145 4.145 17 C -0.175 4.175 18 C -0.147 4.147 19 C -0.147 4.147 20 H 0.080 0.920 21 H 0.030 0.970 22 H 0.025 0.975 23 H 0.067 0.933 24 H 0.135 0.865 25 H 0.103 0.897 26 H 0.095 0.905 27 H 0.087 0.913 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.078 0.922 31 H 0.104 0.896 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.001 -16.543 -2.500 16.851 hybrid contribution -1.405 1.462 0.132 2.032 sum 0.596 -15.081 -2.369 15.278 Atomic orbital electron populations 1.70061 1.07795 1.28688 1.49978 1.25965 0.95908 1.03204 0.93635 0.85294 0.78203 0.76959 0.79390 1.19041 1.19908 1.19002 1.21001 0.93409 0.90324 1.53111 0.92031 1.20669 0.93986 0.92945 0.97366 1.86405 1.21532 1.03060 1.97648 1.21603 0.97791 0.95267 0.97591 0.90632 1.21081 1.00603 0.99203 0.97226 1.22091 0.99457 0.96243 0.96055 1.21137 0.98741 0.92677 1.01229 1.21327 1.01137 0.96866 0.95144 1.21545 0.97726 1.01820 0.96394 1.21386 0.96724 0.97823 0.98718 1.21918 0.97411 0.91491 1.03857 0.92028 0.97020 0.97492 0.93305 0.86536 0.89722 0.90536 0.91328 0.90261 0.90708 0.92150 0.89646 0.92818 0.91523 0.88494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.17 13.29 21.44 0.28 -55.88 16 2 C 0.01 0.79 5.46 84.65 0.46 1.25 16 3 Si 0.98 44.74 29.54 68.60 2.03 46.77 16 4 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 5 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 6 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 7 C -0.54 -32.18 9.13 25.60 0.23 -31.95 16 8 H 0.06 3.64 7.71 -2.91 -0.02 3.62 16 9 C 0.10 5.50 5.33 71.24 0.38 5.88 16 10 S -0.32 -14.70 20.89 -56.49 -1.18 -15.88 16 11 C 0.01 0.18 2.31 29.29 0.07 0.25 16 12 H 0.08 2.81 7.90 -2.41 -0.02 2.79 16 13 C -0.16 -5.55 6.56 27.40 0.18 -5.37 16 14 C -0.12 -3.17 8.37 28.19 0.24 -2.94 16 15 C -0.10 -2.09 5.55 30.00 0.17 -1.92 16 16 C -0.11 -1.84 5.58 30.30 0.17 -1.67 16 17 C -0.14 -2.81 5.64 29.88 0.17 -2.64 16 18 C -0.11 -2.28 5.20 30.20 0.16 -2.13 16 19 C -0.11 -2.97 5.07 30.70 0.16 -2.81 16 20 H 0.27 15.26 8.31 -92.70 -0.77 14.49 16 21 H 0.01 0.69 7.07 -2.39 -0.02 0.67 16 22 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 23 H 0.05 2.01 6.76 -2.91 -0.02 1.99 16 24 H 0.12 2.94 8.06 -2.91 -0.02 2.91 16 25 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.08 1.69 5.11 -2.38 -0.01 1.68 16 27 H 0.07 1.02 8.14 -2.39 -0.02 1.01 16 28 H 0.08 1.12 7.71 -2.39 -0.02 1.10 16 29 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.06 1.53 4.67 -2.39 -0.01 1.52 16 31 H 0.09 1.42 7.83 -2.39 -0.02 1.41 16 32 H 0.05 1.19 8.13 -2.39 -0.02 1.17 16 33 H 0.07 1.89 7.94 -2.39 -0.02 1.87 16 34 H 0.10 2.47 4.20 -2.39 -0.01 2.46 16 Total: -1.00 -65.11 273.20 4.57 -60.54 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: 1.06 Total: 8.49 kcal Atomic # 6 Polarization: -46.42 SS G_CDS: 2.38 Total: -44.04 kcal Atomic # 7 Polarization: -56.17 SS G_CDS: 0.28 Total: -55.88 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Atomic # 16 Polarization: -14.70 SS G_CDS: -1.18 Total: -15.88 kcal Total: -65.11 4.57 -60.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591133723.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.795 kcal (2) G-P(sol) polarization free energy of solvation -65.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds