Wall clock time and date at job start Sun Mar 29 2020 22:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46748 * 2 1 4 4 C 1.50703 * 109.46845 * 119.99620 * 2 1 3 5 5 H 1.07999 * 119.99803 * 119.99749 * 4 2 1 6 6 C 1.37875 * 120.00142 * 300.00313 * 4 2 1 7 7 N 1.31516 * 119.99788 * 179.97438 * 6 4 2 8 8 Si 1.86803 * 120.00006 * 359.97438 * 6 4 2 9 9 H 1.48497 * 109.47352 * 90.00294 * 8 6 4 10 10 H 1.48501 * 109.46796 * 210.00194 * 8 6 4 11 11 H 1.48502 * 109.47137 * 329.99826 * 8 6 4 12 12 N 1.46496 * 109.47112 * 239.99919 * 2 1 3 13 13 C 1.46506 * 119.99759 * 299.99885 * 12 2 1 14 14 C 1.34771 * 120.00157 * 120.00213 * 12 2 1 15 15 O 1.21283 * 120.00062 * 0.02562 * 14 12 2 16 16 C 1.50700 * 120.00216 * 179.97438 * 14 12 2 17 17 H 1.09003 * 112.91705 * 51.48465 * 16 14 12 18 18 C 1.53728 * 113.70600 * 280.00193 * 16 14 12 19 19 C 1.51517 * 86.60549 * 245.59495 * 18 16 14 20 20 O 1.21280 * 134.17450 * 179.97438 * 19 18 16 21 21 N 1.35831 * 91.64883 * 0.02562 * 19 18 16 22 22 H 1.09001 * 109.47080 * 60.00198 * 1 2 3 23 23 H 1.08993 * 109.47250 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47223 * 300.00224 * 1 2 3 25 25 H 0.97002 * 119.99313 * 179.97438 * 7 6 4 26 26 H 1.09001 * 109.47060 * 90.00688 * 13 12 2 27 27 H 1.09004 * 109.47073 * 210.00177 * 13 12 2 28 28 H 1.09000 * 109.47212 * 330.00260 * 13 12 2 29 29 H 1.08997 * 113.69323 * 0.02562 * 18 16 14 30 30 H 1.09005 * 113.69073 * 131.07548 * 18 16 14 31 31 H 0.97006 * 132.38145 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6531 -1.5885 1.1315 6 6 1.6991 -0.2393 2.4828 7 7 2.1371 -0.8595 3.5566 8 14 0.6257 1.2799 2.6541 9 1 -0.8021 0.8747 2.6992 10 1 0.9771 1.9955 3.9070 11 1 0.8491 2.1774 1.4922 12 7 2.0183 -0.6906 -1.1961 13 6 1.6644 -2.0932 -1.4279 14 6 2.7932 -0.0357 -2.0833 15 8 3.0866 1.1253 -1.8911 16 6 3.2960 -0.7463 -3.3134 17 1 2.5016 -1.2410 -3.8724 18 6 4.5188 -1.6411 -3.0539 19 6 5.2914 -0.6895 -3.9446 20 8 6.4419 -0.6334 -4.3243 21 7 4.1886 0.0765 -4.1493 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 1.9030 -0.5278 4.4376 26 1 0.7376 -2.1445 -1.9993 27 1 2.4629 -2.5820 -1.9862 28 1 1.5294 -2.5969 -0.4707 29 1 4.8518 -1.6375 -2.0161 30 1 4.4212 -2.6461 -3.4647 31 1 4.0399 0.8837 -4.6664 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597145313.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:25 Heat of formation + Delta-G solvation = -59.093548 kcal Electronic energy + Delta-G solvation = -15932.839327 eV Core-core repulsion = 13214.760105 eV Total energy + Delta-G solvation = -2718.079222 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.08888 -40.11629 -37.69190 -37.06114 -34.75529 -32.43812 -29.66940 -27.66940 -27.22344 -26.78227 -23.05989 -20.87638 -20.13605 -18.99724 -18.39134 -18.19165 -17.67914 -17.04947 -16.46331 -16.10986 -15.53001 -14.87831 -14.55474 -14.22796 -13.99236 -13.86266 -13.58844 -13.19484 -13.03446 -12.95043 -12.82196 -12.63400 -12.04006 -11.60062 -11.35424 -11.21939 -11.12559 -10.78807 -10.14120 -9.39971 -8.34224 -6.38115 1.26223 1.34067 1.36608 1.43772 1.54427 1.96672 2.27977 2.49526 2.93337 3.01849 3.47648 3.59957 4.13014 4.47786 4.49290 4.61147 4.64422 4.68861 4.78966 4.89966 5.04648 5.13884 5.20342 5.34094 5.51546 5.71584 5.82167 6.20107 6.65074 6.70609 7.16660 7.23580 7.34026 8.81358 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.041391 B = 0.007410 C = 0.007308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.315159 B = 3777.633053 C = 3830.597146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.230 3.770 3 H 0.027 0.973 4 C -0.524 4.524 5 H 0.053 0.947 6 C 0.023 3.977 7 N -0.938 5.938 8 Si 0.937 3.063 9 H -0.253 1.253 10 H -0.300 1.300 11 H -0.264 1.264 12 N -0.585 5.585 13 C 0.069 3.931 14 C 0.492 3.508 15 O -0.596 6.596 16 C 0.128 3.872 17 H 0.179 0.821 18 C -0.151 4.151 19 C 0.524 3.476 20 O -0.554 6.554 21 N -0.720 5.720 22 H 0.057 0.943 23 H 0.075 0.925 24 H 0.037 0.963 25 H 0.267 0.733 26 H 0.084 0.916 27 H 0.099 0.901 28 H 0.065 0.935 29 H 0.107 0.893 30 H 0.175 0.825 31 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.660 -4.584 -14.419 15.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.126 3.874 3 H 0.045 0.955 4 C -0.563 4.563 5 H 0.071 0.929 6 C -0.176 4.176 7 N -0.578 5.578 8 Si 0.765 3.235 9 H -0.178 1.178 10 H -0.228 1.228 11 H -0.189 1.189 12 N -0.315 5.315 13 C -0.073 4.073 14 C 0.279 3.721 15 O -0.477 6.477 16 C 0.020 3.980 17 H 0.196 0.804 18 C -0.191 4.191 19 C 0.311 3.689 20 O -0.431 6.431 21 N -0.379 5.379 22 H 0.076 0.924 23 H 0.094 0.906 24 H 0.056 0.944 25 H 0.076 0.924 26 H 0.103 0.897 27 H 0.118 0.882 28 H 0.084 0.916 29 H 0.125 0.875 30 H 0.192 0.808 31 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -3.918 -3.974 -14.337 15.385 hybrid contribution -0.312 1.417 0.710 1.615 sum -4.230 -2.558 -13.627 14.496 Atomic orbital electron populations 1.22292 0.96362 1.02569 0.99830 1.18966 0.91957 0.93331 0.83161 0.95521 1.21399 1.31616 1.13236 0.90015 0.92879 1.25609 0.97182 0.99258 0.95532 1.69995 1.47148 1.42072 0.98580 0.86039 0.80096 0.80453 0.76901 1.17826 1.22766 1.18922 1.47893 1.48544 1.13793 1.21265 1.22089 1.02477 0.79527 1.03202 1.21273 0.78475 0.86896 0.85451 1.90673 1.59493 1.19673 1.77874 1.22485 0.97154 0.89214 0.89114 0.80407 1.24024 0.90435 1.02201 1.02403 1.22546 0.83746 0.83488 0.79113 1.90727 1.17927 1.76013 1.58383 1.48526 1.10697 1.29473 1.49185 0.92391 0.90648 0.94411 0.92353 0.89713 0.88231 0.91646 0.87456 0.80795 0.74984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.77 8.67 71.98 0.62 -5.15 16 2 C 0.23 10.23 2.23 44.25 0.10 10.32 16 3 H 0.03 1.39 5.96 -2.39 -0.01 1.38 16 4 C -0.52 -27.82 8.57 25.60 0.22 -27.60 16 5 H 0.05 3.03 7.58 -2.91 -0.02 3.01 16 6 C 0.02 1.28 5.45 84.65 0.46 1.75 16 7 N -0.94 -56.11 13.96 21.45 0.30 -55.81 16 8 Si 0.94 43.93 24.37 68.60 1.67 45.60 16 9 H -0.25 -10.80 6.87 99.48 0.68 -10.12 16 10 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 11 H -0.26 -12.29 6.53 99.48 0.65 -11.64 16 12 N -0.58 -20.13 2.75 -826.77 -2.28 -22.40 16 13 C 0.07 1.59 9.15 127.77 1.17 2.75 16 14 C 0.49 16.54 7.20 87.66 0.63 17.17 16 15 O -0.60 -26.56 16.00 -3.04 -0.05 -26.61 16 16 C 0.13 2.63 3.72 44.22 0.16 2.79 16 17 H 0.18 1.79 7.96 -2.39 -0.02 1.77 16 18 C -0.15 -2.83 6.78 30.37 0.21 -2.63 16 19 C 0.52 14.27 9.85 87.65 0.86 15.13 16 20 O -0.55 -19.73 18.03 -3.03 -0.05 -19.78 16 21 N -0.72 -17.11 6.89 -458.82 -3.16 -20.27 16 22 H 0.06 1.89 8.14 -2.39 -0.02 1.88 16 23 H 0.07 2.55 7.67 -2.39 -0.02 2.53 16 24 H 0.04 1.52 3.27 -2.39 -0.01 1.51 16 25 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 26 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.10 1.48 5.95 -2.38 -0.01 1.46 16 28 H 0.06 1.88 7.02 -2.39 -0.02 1.86 16 29 H 0.11 2.45 8.00 -2.39 -0.02 2.43 16 30 H 0.17 1.52 8.14 -2.38 -0.02 1.50 16 31 H 0.41 9.03 8.96 -92.70 -0.83 8.19 16 Total: -1.00 -77.89 259.21 1.12 -76.78 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: 0.25 Total: 7.95 kcal Atomic # 6 Polarization: 10.11 SS G_CDS: 4.44 Total: 14.55 kcal Atomic # 7 Polarization: -93.35 SS G_CDS: -5.14 Total: -98.48 kcal Atomic # 8 Polarization: -46.29 SS G_CDS: -0.10 Total: -46.39 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 1.67 Total: 45.60 kcal Total: -77.89 1.12 -76.78 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597145313.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.682 kcal (2) G-P(sol) polarization free energy of solvation -77.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds