Wall clock time and date at job start Sun Mar 29 2020 22:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47109 * 2 1 4 4 C 1.50697 * 109.47303 * 239.99210 * 2 1 3 5 5 H 1.07991 * 120.00449 * 239.72787 * 4 2 1 6 6 C 1.37885 * 119.99686 * 60.00618 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.72095 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.72528 * 6 4 2 9 9 H 1.48490 * 109.47339 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47239 * 120.00108 * 8 6 4 11 11 H 1.48504 * 109.46636 * 239.99667 * 8 6 4 12 12 N 1.46507 * 109.46582 * 119.99572 * 2 1 3 13 13 C 1.46501 * 119.99975 * 60.00272 * 12 2 1 14 14 C 1.34775 * 119.99733 * 239.99677 * 12 2 1 15 15 O 1.21279 * 120.00497 * 0.02562 * 14 12 2 16 16 C 1.50700 * 119.99510 * 180.02562 * 14 12 2 17 17 H 1.09008 * 112.92129 * 308.51370 * 16 14 12 18 18 C 1.53725 * 113.70992 * 80.00365 * 16 14 12 19 19 C 1.51509 * 86.60689 * 114.39793 * 18 16 14 20 20 O 1.21284 * 134.17561 * 179.97438 * 19 18 16 21 21 N 1.35825 * 91.65253 * 0.02562 * 19 18 16 22 22 H 1.08998 * 109.47109 * 180.02562 * 1 2 3 23 23 H 1.08994 * 109.47204 * 300.00358 * 1 2 3 24 24 H 1.09006 * 109.46531 * 60.00353 * 1 2 3 25 25 H 0.97000 * 119.99651 * 180.02562 * 7 6 4 26 26 H 1.09000 * 109.47537 * 89.99592 * 13 12 2 27 27 H 1.08995 * 109.46832 * 209.99765 * 13 12 2 28 28 H 1.09005 * 109.47098 * 329.99406 * 13 12 2 29 29 H 1.08998 * 113.69037 * 228.82648 * 18 16 14 30 30 H 1.09001 * 113.68801 * 359.86970 * 18 16 14 31 31 H 0.97000 * 132.38551 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2303 5 1 2.6569 -1.5860 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9389 0.8266 -2.6035 8 14 2.3284 -1.1158 -4.0078 9 1 3.1582 -2.2790 -3.6035 10 1 1.1769 -1.5865 -4.8186 11 1 3.1508 -0.1779 -4.8137 12 7 2.0183 -0.6906 1.1963 13 6 1.6643 -2.0931 1.4282 14 6 2.7931 -0.0355 2.0834 15 8 3.0859 1.1257 1.8917 16 6 3.2958 -0.7461 3.3137 17 1 2.5013 -1.2407 3.8726 18 6 4.5185 -1.6409 3.0544 19 6 5.2911 -0.6893 3.9450 20 8 6.4413 -0.6335 4.3254 21 7 4.1880 0.0761 4.1505 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3632 0.5138 -0.8901 25 1 0.7043 1.1577 -3.4845 26 1 2.4156 -2.7378 0.9719 27 1 1.6236 -2.2851 2.5003 28 1 0.6903 -2.3001 0.9848 29 1 4.4215 -2.6453 3.4667 30 1 4.8506 -1.6388 2.0162 31 1 4.0393 0.8834 4.6674 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597145320.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:31 Heat of formation + Delta-G solvation = -37.994349 kcal Electronic energy + Delta-G solvation = -15878.671000 eV Core-core repulsion = 13161.506707 eV Total energy + Delta-G solvation = -2717.164292 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.84683 -38.59424 -36.31130 -35.36046 -32.93748 -29.88782 -28.44769 -26.35804 -25.59711 -25.18641 -21.30928 -19.72193 -18.69996 -17.28958 -17.07239 -16.56829 -16.03189 -15.42658 -14.81804 -14.45547 -14.08012 -13.09692 -12.96732 -12.70962 -12.60824 -12.16684 -11.86505 -11.63495 -11.55336 -11.12471 -10.87163 -10.79584 -10.31606 -10.23695 -10.02823 -9.78377 -9.23966 -8.78352 -8.48978 -7.73840 -6.13705 -4.22200 2.50575 2.93776 3.22470 3.24381 3.31565 3.34799 3.85543 4.01013 4.33995 4.55984 4.84802 4.98578 5.18215 5.47900 5.58812 5.73384 5.95128 6.20070 6.24978 6.67874 6.72746 6.90199 6.96143 7.29531 7.40967 7.63808 7.92955 8.10268 8.31404 8.38967 8.72262 8.88703 9.44776 10.91654 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.036155 B = 0.007381 C = 0.006914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.250464 B = 3792.540467 C = 4048.567980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.257 3.743 3 H 0.063 0.937 4 C -0.527 4.527 5 H 0.061 0.939 6 C 0.064 3.936 7 N -0.887 5.887 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.585 5.585 13 C 0.082 3.918 14 C 0.498 3.502 15 O -0.540 6.540 16 C 0.112 3.888 17 H 0.121 0.879 18 C -0.165 4.165 19 C 0.536 3.464 20 O -0.512 6.512 21 N -0.721 5.721 22 H 0.031 0.969 23 H 0.011 0.989 24 H 0.095 0.905 25 H 0.263 0.737 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.076 0.924 29 H 0.121 0.879 30 H 0.120 0.880 31 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.343 -7.226 9.532 11.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.157 3.843 3 H 0.081 0.919 4 C -0.565 4.565 5 H 0.079 0.921 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.727 3.273 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.317 5.317 13 C -0.062 4.062 14 C 0.282 3.718 15 O -0.418 6.418 16 C 0.003 3.997 17 H 0.138 0.862 18 C -0.206 4.206 19 C 0.321 3.679 20 O -0.385 6.385 21 N -0.381 5.381 22 H 0.051 0.949 23 H 0.031 0.969 24 H 0.113 0.887 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.095 0.905 29 H 0.139 0.861 30 H 0.138 0.862 31 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 0.344 -6.451 9.479 11.471 hybrid contribution -0.003 -0.072 -0.714 0.718 sum 0.340 -6.524 8.765 10.931 Atomic orbital electron populations 1.22102 0.98017 0.99484 1.00975 1.19009 0.90989 0.94539 0.79789 0.91880 1.21335 1.31816 1.13222 0.90174 0.92077 1.24904 0.94902 0.94943 0.99061 1.69883 1.36159 1.22740 1.23772 0.86425 0.78638 0.79575 0.82680 1.19742 1.20901 1.20912 1.48252 1.48186 1.11820 1.23395 1.21655 1.02153 0.82987 0.99401 1.20204 0.79927 0.87352 0.84305 1.90698 1.57826 1.16818 1.76419 1.22387 0.95528 0.90057 0.91690 0.86163 1.23898 0.92810 1.00318 1.03542 1.21943 0.84162 0.82656 0.79168 1.90749 1.16175 1.74830 1.56792 1.48399 1.10701 1.29308 1.49679 0.94946 0.96941 0.88686 0.92661 0.92780 0.92823 0.90515 0.86088 0.86204 0.75359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.32 8.95 37.16 0.33 -2.99 16 2 C 0.26 6.20 2.64 -69.08 -0.18 6.02 16 3 H 0.06 1.80 6.90 -51.93 -0.36 1.44 16 4 C -0.53 -13.61 8.37 -34.44 -0.29 -13.90 16 5 H 0.06 1.54 7.65 -52.49 -0.40 1.14 16 6 C 0.06 1.71 5.31 -17.82 -0.09 1.61 16 7 N -0.89 -24.49 11.31 55.43 0.63 -23.86 16 8 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 16 9 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 N -0.59 -11.23 2.75 -175.26 -0.48 -11.71 16 13 C 0.08 1.15 9.40 59.85 0.56 1.72 16 14 C 0.50 9.32 7.20 -10.99 -0.08 9.24 16 15 O -0.54 -12.68 16.01 5.56 0.09 -12.59 16 16 C 0.11 1.45 3.82 -68.38 -0.26 1.19 16 17 H 0.12 1.12 7.09 -51.92 -0.37 0.75 16 18 C -0.16 -1.92 7.78 -27.15 -0.21 -2.13 16 19 C 0.54 8.00 9.85 -10.28 -0.10 7.89 16 20 O -0.51 -9.39 18.03 5.55 0.10 -9.29 16 21 N -0.72 -9.85 6.89 -59.16 -0.41 -10.26 16 22 H 0.03 0.66 6.66 -51.93 -0.35 0.32 16 23 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 24 H 0.09 2.40 6.06 -51.93 -0.31 2.08 16 25 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.05 0.53 6.28 -51.93 -0.33 0.20 16 28 H 0.08 1.12 6.43 -51.93 -0.33 0.79 16 29 H 0.12 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.12 1.53 8.00 -51.93 -0.42 1.11 16 31 H 0.41 5.08 8.96 -40.82 -0.37 4.71 16 LS Contribution 265.90 15.07 4.01 4.01 Total: -1.00 -32.57 265.90 -5.04 -37.61 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -3.63 Total: 1.98 kcal Atomic # 6 Polarization: 8.98 SS G_CDS: -0.32 Total: 8.66 kcal Atomic # 7 Polarization: -45.57 SS G_CDS: -0.26 Total: -45.84 kcal Atomic # 8 Polarization: -22.07 SS G_CDS: 0.19 Total: -21.88 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -32.57 -5.04 -37.61 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597145320.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.385 kcal (2) G-P(sol) polarization free energy of solvation -32.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds