Wall clock time and date at job start Sun Mar 29 2020 22:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46496 * 119.99884 * 2 1 4 4 C 1.50703 * 109.46871 * 269.99501 * 3 2 1 5 5 O 1.21289 * 120.00295 * 0.02562 * 4 3 2 6 6 N 1.34781 * 119.99994 * 180.02562 * 4 3 2 7 7 C 1.37091 * 120.00246 * 179.97438 * 6 4 3 8 8 H 1.08005 * 119.99565 * 0.02562 * 7 6 4 9 9 C 1.38948 * 120.00293 * 179.97438 * 7 6 4 10 10 N 1.31414 * 119.99810 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 119.99992 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.46985 * 60.00399 * 11 9 7 13 13 H 1.48506 * 109.47252 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47515 * 300.00409 * 11 9 7 15 15 C 1.34777 * 119.99858 * 179.97438 * 2 1 3 16 16 O 1.21279 * 120.00166 * 180.02562 * 15 2 1 17 17 C 1.50706 * 119.99762 * 0.02562 * 15 2 1 18 18 C 1.53001 * 117.49756 * 248.61806 * 17 15 2 19 19 C 1.52999 * 59.99986 * 252.51526 * 18 17 15 20 20 H 1.08999 * 109.47441 * 270.00307 * 1 2 3 21 21 H 1.09005 * 109.47121 * 30.00515 * 1 2 3 22 22 H 1.08997 * 109.47160 * 150.00168 * 1 2 3 23 23 H 1.09000 * 109.47710 * 29.99936 * 3 2 1 24 24 H 1.09000 * 109.46883 * 149.99979 * 3 2 1 25 25 H 0.97000 * 119.99898 * 0.02562 * 6 4 3 26 26 H 0.96998 * 119.99866 * 179.97438 * 10 9 7 27 27 H 1.08996 * 115.55128 * 34.33271 * 17 15 2 28 28 H 1.09004 * 117.49834 * 0.02562 * 18 17 15 29 29 H 1.08997 * 117.49999 * 145.02096 * 18 17 15 30 30 H 1.09004 * 117.50109 * 252.51157 * 19 18 17 31 31 H 1.08998 * 117.52032 * 107.48340 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7036 -1.4209 5 8 2.0543 1.0213 -2.3428 6 7 3.1117 2.8510 -1.6672 7 6 3.3408 3.2464 -2.9597 8 1 2.9895 2.6387 -3.7806 9 6 4.0238 4.4294 -3.2137 10 7 4.4507 5.1691 -2.2148 11 14 4.3352 4.9685 -4.9748 12 1 3.0376 5.1461 -5.6749 13 1 5.0782 6.2543 -4.9749 14 1 5.1377 3.9335 -5.6749 15 6 2.1389 -1.1672 0.0005 16 8 3.3517 -1.1673 0.0010 17 6 1.3853 -2.4723 0.0005 18 6 1.4600 -3.3312 1.2645 19 6 2.2074 -3.7627 0.0011 20 1 -0.3634 0.0001 1.0276 21 1 -0.3633 0.8900 -0.5139 22 1 -0.3633 -0.8900 -0.5138 23 1 1.6085 2.0284 0.5138 24 1 3.1499 1.1383 0.5138 25 1 3.4275 3.3965 -0.9299 26 1 4.9278 5.9948 -2.3921 27 1 0.4472 -2.4735 -0.5545 28 1 2.0539 -2.9521 2.0962 29 1 0.5709 -3.8975 1.5415 30 1 1.8099 -4.6129 -0.5532 31 1 3.2932 -3.6677 0.0011 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609582069.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:33 Heat of formation + Delta-G solvation = -41.323989 kcal Electronic energy + Delta-G solvation = -15488.197979 eV Core-core repulsion = 12770.889302 eV Total energy + Delta-G solvation = -2717.308676 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.89268 -38.00699 -36.05338 -35.02365 -33.80880 -31.24449 -28.70802 -26.36159 -24.91884 -23.13200 -22.42856 -19.58608 -18.60478 -17.86716 -17.26595 -16.24293 -15.77359 -15.04090 -14.60072 -14.24830 -13.98812 -13.63027 -13.39379 -12.77060 -12.51581 -12.27637 -12.03300 -11.56761 -11.51414 -11.39336 -10.98251 -10.57699 -10.44355 -10.42637 -10.20601 -9.50864 -9.48939 -8.92681 -7.99389 -7.95531 -6.39731 -3.80663 2.75711 3.21435 3.23980 3.27164 3.32828 3.89612 3.91522 4.20839 4.62809 4.79013 4.89672 5.05873 5.11957 5.25853 5.37882 5.51417 5.56412 5.68291 5.78521 5.87224 5.94964 6.02585 6.13839 6.25597 6.73505 7.56579 7.67847 8.05747 8.50216 8.63349 9.18979 9.54715 10.05871 10.77717 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.052974 B = 0.005756 C = 0.005641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.433760 B = 4863.353648 C = 4962.098863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.589 5.589 3 C 0.103 3.897 4 C 0.426 3.574 5 O -0.588 6.588 6 N -0.560 5.560 7 C -0.300 4.300 8 H 0.101 0.899 9 C 0.023 3.977 10 N -0.901 5.901 11 Si 0.931 3.069 12 H -0.274 1.274 13 H -0.284 1.284 14 H -0.274 1.274 15 C 0.547 3.453 16 O -0.540 6.540 17 C -0.188 4.188 18 C -0.154 4.154 19 C -0.150 4.150 20 H 0.053 0.947 21 H 0.072 0.928 22 H 0.070 0.930 23 H 0.092 0.908 24 H 0.099 0.901 25 H 0.393 0.607 26 H 0.272 0.728 27 H 0.124 0.876 28 H 0.097 0.903 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.023 -10.178 8.030 15.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.320 5.320 3 C -0.023 4.023 4 C 0.211 3.789 5 O -0.473 6.473 6 N -0.196 5.196 7 C -0.429 4.429 8 H 0.119 0.881 9 C -0.178 4.178 10 N -0.542 5.542 11 Si 0.758 3.242 12 H -0.199 1.199 13 H -0.209 1.209 14 H -0.199 1.199 15 C 0.335 3.665 16 O -0.417 6.417 17 C -0.209 4.209 18 C -0.192 4.192 19 C -0.187 4.187 20 H 0.072 0.928 21 H 0.091 0.909 22 H 0.088 0.912 23 H 0.110 0.890 24 H 0.117 0.883 25 H 0.226 0.774 26 H 0.082 0.918 27 H 0.142 0.858 28 H 0.116 0.884 29 H 0.120 0.880 30 H 0.119 0.881 31 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -7.542 -10.424 7.409 14.847 hybrid contribution 0.220 0.853 -0.563 1.045 sum -7.322 -9.571 6.846 13.859 Atomic orbital electron populations 1.21746 0.79419 1.03610 1.00884 1.47178 1.06844 1.05192 1.72835 1.21234 0.98662 0.85335 0.97089 1.20310 0.84523 0.83618 0.90466 1.90506 1.55911 1.55233 1.45640 1.41838 1.49122 1.19737 1.08927 1.19647 1.33712 1.05290 0.84291 0.88080 1.25261 0.96821 0.96103 0.99661 1.69605 1.38510 1.14805 1.31295 0.85910 0.78605 0.77746 0.81901 1.19924 1.20916 1.19898 1.19520 0.87246 0.84257 0.75479 1.90678 1.13936 1.87132 1.49945 1.22214 1.02713 0.90958 1.05041 1.22901 1.03029 1.01780 0.91480 1.22934 1.00214 0.95527 1.00053 0.92833 0.90885 0.91151 0.88951 0.88338 0.77372 0.91788 0.85797 0.88408 0.88036 0.88105 0.87462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.11 10.27 59.85 0.61 1.72 16 2 N -0.59 -10.21 2.36 -182.95 -0.43 -10.64 16 3 C 0.10 1.96 5.89 -5.19 -0.03 1.93 16 4 C 0.43 10.56 7.85 -10.98 -0.09 10.48 16 5 O -0.59 -16.68 16.01 5.55 0.09 -16.59 16 6 N -0.56 -14.71 5.29 -10.96 -0.06 -14.77 16 7 C -0.30 -8.61 9.68 -14.94 -0.14 -8.76 16 8 H 0.10 3.05 7.16 -52.48 -0.38 2.67 16 9 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 10 N -0.90 -24.94 13.05 55.50 0.72 -24.22 16 11 Si 0.93 21.49 29.55 -169.99 -5.02 16.47 16 12 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 13 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 14 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 15 C 0.55 10.01 7.46 -10.98 -0.08 9.93 16 16 O -0.54 -12.04 15.84 5.56 0.09 -11.96 16 17 C -0.19 -2.52 5.29 -91.77 -0.49 -3.00 16 18 C -0.15 -1.59 10.23 -26.73 -0.27 -1.87 16 19 C -0.15 -1.79 10.04 -26.73 -0.27 -2.06 16 20 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 21 H 0.07 0.98 8.07 -51.93 -0.42 0.56 16 22 H 0.07 0.79 6.00 -51.93 -0.31 0.48 16 23 H 0.09 1.42 8.07 -51.93 -0.42 1.00 16 24 H 0.10 1.88 7.42 -51.93 -0.39 1.49 16 25 H 0.39 9.79 7.90 -40.82 -0.32 9.47 16 26 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 27 H 0.12 1.42 6.44 -51.93 -0.33 1.09 16 28 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 29 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.11 1.48 7.67 -51.93 -0.40 1.09 16 LS Contribution 275.22 15.07 4.15 4.15 Total: -1.00 -35.00 275.22 -5.11 -40.11 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -3.79 Total: 8.55 kcal Atomic # 6 Polarization: 9.76 SS G_CDS: -0.85 Total: 8.90 kcal Atomic # 7 Polarization: -49.87 SS G_CDS: 0.23 Total: -49.63 kcal Atomic # 8 Polarization: -28.72 SS G_CDS: 0.18 Total: -28.54 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -35.00 -5.11 -40.11 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609582069.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.215 kcal (2) G-P(sol) polarization free energy of solvation -35.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds