Wall clock time and date at job start Sun Mar 29 2020 22:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47518 * 2 1 4 4 C 1.53002 * 109.47079 * 239.99409 * 2 1 3 5 5 C 1.52999 * 109.46904 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.47509 * 60.00153 * 5 4 2 7 7 C 1.53005 * 109.46758 * 300.00186 * 6 5 4 8 8 H 1.08994 * 109.47224 * 299.99272 * 7 6 5 9 9 C 1.53009 * 109.46802 * 179.97438 * 7 6 5 10 10 C 1.50695 * 109.47097 * 64.99928 * 9 7 6 11 11 O 1.21207 * 120.00557 * 359.97438 * 10 9 7 12 12 O 1.34313 * 119.99849 * 180.02562 * 10 9 7 13 13 C 1.34924 * 117.00023 * 179.97438 * 12 10 9 14 14 H 1.07999 * 119.99969 * 359.97438 * 13 12 10 15 15 C 1.38754 * 119.99738 * 179.97438 * 13 12 10 16 16 N 1.31442 * 120.00467 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99846 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47057 * 0.02562 * 17 15 13 19 19 H 1.48495 * 109.47216 * 120.00041 * 17 15 13 20 20 H 1.48500 * 109.47389 * 240.00188 * 17 15 13 21 21 C 1.52998 * 109.47438 * 60.00013 * 7 6 5 22 22 H 1.08996 * 109.47205 * 300.00713 * 1 2 3 23 23 H 1.09008 * 109.47022 * 60.00342 * 1 2 3 24 24 H 1.09006 * 109.47214 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47099 * 300.00306 * 4 2 1 26 26 H 1.08995 * 109.47139 * 60.00561 * 4 2 1 27 27 H 1.09000 * 109.46927 * 180.02562 * 5 4 2 28 28 H 1.08999 * 109.47207 * 299.99890 * 5 4 2 29 29 H 1.08995 * 109.47445 * 179.97438 * 6 5 4 30 30 H 1.08999 * 109.47101 * 59.99672 * 6 5 4 31 31 H 1.09001 * 109.46838 * 304.99476 * 9 7 6 32 32 H 1.08995 * 109.46886 * 185.00020 * 9 7 6 33 33 H 0.96996 * 119.99975 * 179.97438 * 16 15 13 34 34 H 1.09006 * 109.47214 * 59.99616 * 21 7 6 35 35 H 1.08996 * 109.47205 * 180.02562 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5700 -0.7219 -1.2488 6 6 4.0795 -1.4434 0.0005 7 6 3.5694 -0.7220 1.2496 8 1 3.9331 0.3054 1.2498 9 6 4.0785 -1.4439 2.4990 10 6 5.5804 -1.3386 2.5631 11 8 6.1840 -0.7455 1.6954 12 8 6.2503 -1.9030 3.5813 13 6 7.5932 -1.7722 3.5783 14 1 8.0814 -1.2329 2.7800 15 6 8.3468 -2.3305 4.6008 16 7 7.7527 -2.9872 5.5721 17 14 10.2061 -2.1500 4.5963 18 1 10.6251 -1.3731 3.4021 19 1 10.6373 -1.4378 5.8259 20 1 10.8340 -3.4952 4.5575 21 6 2.0394 -0.7216 1.2494 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0277 0.0005 25 1 1.6766 -1.7490 -1.2491 26 1 1.6767 -0.2076 -2.1392 27 1 3.9333 -1.2355 -2.1390 28 1 3.9337 0.3056 -1.2487 29 1 5.1695 -1.4442 0.0005 30 1 3.7158 -2.4709 0.0003 31 1 3.7893 -2.4940 2.4550 32 1 3.6438 -0.9843 3.3866 33 1 8.2797 -3.3778 6.2866 34 1 1.6757 -1.7492 1.2492 35 1 1.6761 -0.2073 2.1390 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000750241720.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:32 Heat of formation + Delta-G solvation = -140.259237 kcal Electronic energy + Delta-G solvation = -15856.902415 eV Core-core repulsion = 13238.843928 eV Total energy + Delta-G solvation = -2618.058487 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.136 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.20369 -39.65213 -37.23973 -34.33333 -34.21241 -32.69368 -29.02639 -27.19925 -26.97707 -23.17252 -22.55279 -20.89720 -20.64169 -19.85439 -18.38416 -16.82787 -16.60370 -16.24913 -16.06767 -15.31124 -15.18003 -14.77796 -14.47682 -13.96272 -13.56197 -13.43540 -13.19118 -13.00533 -12.69933 -12.63762 -12.24348 -12.15516 -12.14986 -11.95773 -11.84781 -11.66908 -11.29654 -11.24200 -10.84397 -10.71054 -10.60878 -8.53942 -6.33650 1.30557 1.33089 1.51648 1.67973 2.12675 2.82562 2.97116 3.70551 3.80136 3.92431 4.16835 4.27255 4.34998 4.47460 4.55421 4.61159 4.69756 4.78437 4.82909 4.86426 4.94368 5.01404 5.07683 5.12770 5.18276 5.25580 5.32135 5.39620 5.45894 5.50538 5.58786 5.66837 5.85293 6.72429 6.91827 7.81104 8.67470 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.061979 B = 0.005400 C = 0.005108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.656475 B = 5184.124399 C = 5480.537818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.092 4.092 3 H 0.062 0.938 4 C -0.108 4.108 5 C -0.114 4.114 6 C -0.122 4.122 7 C -0.065 4.065 8 H 0.055 0.945 9 C -0.094 4.094 10 C 0.394 3.606 11 O -0.575 6.575 12 O -0.252 6.252 13 C -0.421 4.421 14 H 0.079 0.921 15 C -0.006 4.006 16 N -0.905 5.905 17 Si 1.017 2.983 18 H -0.266 1.266 19 H -0.259 1.259 20 H -0.259 1.259 21 C -0.102 4.102 22 H 0.057 0.943 23 H 0.061 0.939 24 H 0.059 0.941 25 H 0.067 0.933 26 H 0.072 0.928 27 H 0.064 0.936 28 H 0.050 0.950 29 H 0.042 0.958 30 H 0.062 0.938 31 H 0.106 0.894 32 H 0.108 0.892 33 H 0.278 0.722 34 H 0.074 0.926 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.767 3.270 -9.386 16.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.110 4.110 3 H 0.081 0.919 4 C -0.145 4.145 5 C -0.151 4.151 6 C -0.159 4.159 7 C -0.083 4.083 8 H 0.074 0.926 9 C -0.131 4.131 10 C 0.242 3.758 11 O -0.473 6.473 12 O -0.161 6.161 13 C -0.496 4.496 14 H 0.097 0.903 15 C -0.205 4.205 16 N -0.543 5.543 17 Si 0.836 3.164 18 H -0.190 1.190 19 H -0.184 1.184 20 H -0.184 1.184 21 C -0.139 4.139 22 H 0.076 0.924 23 H 0.080 0.920 24 H 0.078 0.922 25 H 0.086 0.914 26 H 0.091 0.909 27 H 0.082 0.918 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.081 0.919 31 H 0.125 0.875 32 H 0.126 0.874 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.574 3.300 -9.407 16.047 hybrid contribution 1.175 0.044 0.207 1.194 sum -11.399 3.345 -9.201 15.026 Atomic orbital electron populations 1.21784 0.93716 1.02259 1.02108 1.21123 0.96405 0.99141 0.94356 0.91949 1.21585 0.93950 1.01123 0.97867 1.21473 0.96824 0.99975 0.96834 1.21671 1.00235 0.99128 0.94886 1.20895 0.96570 0.98643 0.92210 0.92604 1.21402 0.85436 1.04536 1.01745 1.24623 0.93145 0.77903 0.80101 1.90485 1.71803 1.44376 1.40606 1.83917 1.21985 1.65687 1.44498 1.21431 0.79002 1.37948 1.11269 0.90308 1.26528 1.05979 0.94498 0.93542 1.70081 1.38672 1.33865 1.11701 0.84582 0.73568 0.79171 0.79105 1.19013 1.18366 1.18363 1.21625 0.91859 1.01793 0.98644 0.92362 0.92000 0.92203 0.91413 0.90902 0.91774 0.93111 0.93908 0.91942 0.87542 0.87382 0.91252 0.90774 0.90964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.19 71.98 0.66 -1.47 16 2 C -0.09 -1.79 2.72 -10.79 -0.03 -1.82 16 3 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 4 C -0.11 -2.12 5.20 30.59 0.16 -1.96 16 5 C -0.11 -2.89 5.92 30.59 0.18 -2.71 16 6 C -0.12 -3.88 4.94 30.60 0.15 -3.73 16 7 C -0.06 -2.00 1.84 -10.79 -0.02 -2.02 16 8 H 0.06 1.95 7.96 -2.39 -0.02 1.93 16 9 C -0.09 -3.40 5.29 29.85 0.16 -3.24 16 10 C 0.39 20.20 7.62 71.23 0.54 20.75 16 11 O -0.58 -31.85 13.20 20.78 0.27 -31.57 16 12 O -0.25 -15.29 9.75 14.81 0.14 -15.14 16 13 C -0.42 -26.28 9.65 67.94 0.66 -25.63 16 14 H 0.08 5.01 6.86 -2.91 -0.02 4.99 16 15 C -0.01 -0.33 5.49 84.87 0.47 0.13 16 16 N -0.91 -54.66 13.67 21.62 0.30 -54.36 16 17 Si 1.02 44.48 29.55 68.60 2.03 46.51 16 18 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 19 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 20 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 21 C -0.10 -2.28 4.48 30.60 0.14 -2.14 16 22 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 23 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 24 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 25 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.04 1.73 5.95 -2.39 -0.01 1.72 16 30 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.11 3.50 8.14 -2.39 -0.02 3.48 16 32 H 0.11 3.52 8.14 -2.39 -0.02 3.50 16 33 H 0.28 15.15 8.31 -92.71 -0.77 14.38 16 34 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 35 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -71.98 284.76 6.85 -65.13 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: 1.04 Total: 13.29 kcal Atomic # 6 Polarization: -26.91 SS G_CDS: 3.06 Total: -23.84 kcal Atomic # 7 Polarization: -54.66 SS G_CDS: 0.30 Total: -54.36 kcal Atomic # 8 Polarization: -47.13 SS G_CDS: 0.42 Total: -46.72 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -71.98 6.85 -65.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750241720.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.133 kcal (2) G-P(sol) polarization free energy of solvation -71.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds