Wall clock time and date at job start Sun Mar 29 2020 22:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53009 * 109.47080 * 2 1 4 4 C 1.53003 * 109.47255 * 119.99822 * 2 1 3 5 5 C 1.53001 * 109.46900 * 174.28122 * 4 2 1 6 6 C 1.50700 * 112.85058 * 306.41194 * 5 4 2 7 7 O 1.21212 * 119.99800 * 342.36463 * 6 5 4 8 8 O 1.34311 * 119.99929 * 162.36746 * 6 5 4 9 9 C 1.34916 * 116.99813 * 180.02562 * 8 6 5 10 10 H 1.07996 * 120.00531 * 359.71633 * 9 8 6 11 11 C 1.38758 * 120.00007 * 179.97438 * 9 8 6 12 12 N 1.31440 * 119.99621 * 359.72708 * 11 9 8 13 13 Si 1.86800 * 119.99923 * 179.72113 * 11 9 8 14 14 H 1.48490 * 109.47304 * 0.02562 * 13 11 9 15 15 H 1.48505 * 109.46597 * 120.00481 * 13 11 9 16 16 H 1.48503 * 109.47155 * 239.99652 * 13 11 9 17 17 C 1.53779 * 113.69287 * 77.68125 * 5 4 2 18 18 C 1.53784 * 87.07912 * 89.12286 * 17 5 4 19 19 C 1.53784 * 113.60950 * 175.22052 * 5 4 2 20 20 H 1.09002 * 109.47300 * 299.99807 * 1 2 3 21 21 H 1.09003 * 109.47441 * 59.99736 * 1 2 3 22 22 H 1.09000 * 109.46932 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47639 * 240.00149 * 2 1 3 24 24 H 1.09003 * 109.46926 * 68.74625 * 3 2 1 25 25 H 1.08995 * 109.47186 * 188.74620 * 3 2 1 26 26 H 1.09000 * 109.47098 * 308.74946 * 3 2 1 27 27 H 1.09001 * 109.46790 * 54.28003 * 4 2 1 28 28 H 1.08997 * 109.46866 * 294.28090 * 4 2 1 29 29 H 0.97007 * 119.99949 * 180.02562 * 12 11 9 30 30 H 1.09000 * 113.61302 * 203.67001 * 17 5 4 31 31 H 1.09000 * 113.61684 * 334.58078 * 17 5 4 32 32 H 1.09002 * 113.61890 * 270.88140 * 18 17 5 33 33 H 1.09002 * 113.61355 * 139.98175 * 18 17 5 34 34 H 1.08995 * 113.61852 * 25.34571 * 19 5 4 35 35 H 1.08999 * 113.61404 * 156.25520 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5632 -0.8469 1.1794 6 6 4.0395 -1.4883 -0.0984 7 8 3.2661 -2.1230 -0.7828 8 8 5.3209 -1.3569 -0.4787 9 6 5.6816 -1.9553 -1.6328 10 1 4.9532 -2.5127 -2.2029 11 6 6.9900 -1.8590 -2.0848 12 7 7.8766 -1.1803 -1.3912 13 14 7.4914 -2.6941 -3.6788 14 1 6.3167 -3.3884 -4.2646 15 1 7.9913 -1.6744 -4.6357 16 1 8.5647 -3.6827 -3.4034 17 6 4.3072 0.4523 1.5310 18 6 4.2819 -0.0219 2.9937 19 6 4.1897 -1.4556 2.4451 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8933 -0.5138 -0.8899 24 1 1.8098 1.9093 0.9578 25 1 3.1186 1.4466 -0.1563 26 1 1.5546 1.9995 -0.8015 27 1 1.5954 -1.7151 1.3020 28 1 1.7626 -0.1516 2.1362 29 1 8.7912 -1.1127 -1.7074 30 1 5.3100 0.5093 1.1077 31 1 3.7199 1.3533 1.3540 32 1 3.3934 0.2946 3.5401 33 1 5.2066 0.1802 3.5342 34 1 3.5077 -2.0947 3.0058 35 1 5.1605 -1.9200 2.2717 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000757141302.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:24 Heat of formation + Delta-G solvation = -95.479882 kcal Electronic energy + Delta-G solvation = -16582.891200 eV Core-core repulsion = 13966.774492 eV Total energy + Delta-G solvation = -2616.116709 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.136 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.80343 -39.56816 -37.21132 -36.11266 -34.26513 -29.57036 -28.45380 -27.82184 -26.22781 -25.57545 -22.39906 -21.06889 -20.07900 -19.69340 -18.10048 -16.97110 -16.72520 -16.28989 -15.96220 -15.73658 -15.01182 -14.57970 -14.38972 -13.75255 -13.35156 -13.29334 -13.18945 -13.02223 -12.79908 -12.71910 -12.41420 -12.34523 -12.20502 -12.06121 -11.93191 -11.53197 -11.46161 -11.12350 -10.78204 -10.68436 -10.49789 -8.54570 -6.33479 1.28041 1.30348 1.48519 1.65546 2.10699 2.81045 2.94865 3.57257 3.68559 3.76812 3.89477 4.11624 4.22419 4.29484 4.65377 4.71559 4.76732 4.83005 4.84471 4.86630 4.91616 5.00331 5.00908 5.07740 5.10838 5.17395 5.19076 5.29583 5.37693 5.50804 5.56748 5.65573 5.84891 6.72961 6.91235 7.83887 8.66430 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.030579 B = 0.008624 C = 0.007578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.453239 B = 3245.826595 C = 3694.062069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.113 4.113 3 C -0.150 4.150 4 C -0.065 4.065 5 C -0.076 4.076 6 C 0.408 3.592 7 O -0.584 6.584 8 O -0.240 6.240 9 C -0.420 4.420 10 H 0.074 0.926 11 C -0.004 4.004 12 N -0.901 5.901 13 Si 1.013 2.987 14 H -0.268 1.268 15 H -0.259 1.259 16 H -0.258 1.258 17 C -0.138 4.138 18 C -0.112 4.112 19 C -0.125 4.125 20 H 0.077 0.923 21 H 0.054 0.946 22 H 0.046 0.954 23 H 0.038 0.962 24 H 0.084 0.916 25 H 0.041 0.959 26 H 0.054 0.946 27 H 0.058 0.942 28 H 0.111 0.889 29 H 0.278 0.722 30 H 0.058 0.942 31 H 0.105 0.895 32 H 0.118 0.882 33 H 0.078 0.922 34 H 0.093 0.907 35 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.194 4.873 7.814 13.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.131 4.131 3 C -0.207 4.207 4 C -0.102 4.102 5 C -0.078 4.078 6 C 0.257 3.743 7 O -0.482 6.482 8 O -0.149 6.149 9 C -0.497 4.497 10 H 0.092 0.908 11 C -0.203 4.203 12 N -0.539 5.539 13 Si 0.832 3.168 14 H -0.192 1.192 15 H -0.183 1.183 16 H -0.183 1.183 17 C -0.175 4.175 18 C -0.149 4.149 19 C -0.162 4.162 20 H 0.096 0.904 21 H 0.073 0.927 22 H 0.066 0.934 23 H 0.056 0.944 24 H 0.103 0.897 25 H 0.060 0.940 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.129 0.871 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.123 0.877 32 H 0.136 0.864 33 H 0.097 0.903 34 H 0.112 0.888 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.152 4.776 7.636 12.840 hybrid contribution 0.604 -0.785 -1.248 1.593 sum -8.548 3.991 6.388 11.393 Atomic orbital electron populations 1.21722 0.93255 1.01541 1.02548 1.21236 0.97248 0.96577 0.98077 1.22096 1.00318 0.95389 1.02847 1.21266 0.88619 1.01131 0.99208 1.21996 0.98078 0.98984 0.88694 1.24393 0.80918 0.80325 0.88698 1.90461 1.56413 1.43896 1.57398 1.83887 1.27329 1.64745 1.38906 1.21381 0.96274 1.33309 0.98688 0.90811 1.26463 0.93756 0.97081 1.03050 1.70080 1.04198 1.39597 1.40028 0.84636 0.78600 0.78214 0.75324 1.19199 1.18304 1.18282 1.23287 0.99966 0.96416 0.97839 1.22814 1.04040 0.93163 0.94906 1.22937 1.00310 0.98994 0.94006 0.90360 0.92732 0.93448 0.94362 0.89711 0.94044 0.92659 0.92294 0.87054 0.91311 0.92350 0.87731 0.86373 0.90317 0.88799 0.92303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.29 9.18 71.98 0.66 -2.63 16 2 C -0.11 -3.61 2.67 -10.79 -0.03 -3.64 16 3 C -0.15 -4.19 7.61 71.99 0.55 -3.64 16 4 C -0.07 -1.97 3.86 30.60 0.12 -1.86 16 5 C -0.08 -2.87 0.84 -52.40 -0.04 -2.92 16 6 C 0.41 21.53 6.48 71.24 0.46 21.99 16 7 O -0.58 -33.57 13.85 20.77 0.29 -33.28 16 8 O -0.24 -14.68 8.84 14.91 0.13 -14.55 16 9 C -0.42 -26.60 9.64 67.94 0.66 -25.95 16 10 H 0.07 4.80 6.86 -2.91 -0.02 4.78 16 11 C 0.00 -0.21 5.49 84.88 0.47 0.26 16 12 N -0.90 -54.50 13.67 21.63 0.30 -54.20 16 13 Si 1.01 45.06 29.55 68.60 2.03 47.09 16 14 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 15 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 16 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 17 C -0.14 -4.62 6.07 31.12 0.19 -4.43 16 18 C -0.11 -2.83 7.73 31.12 0.24 -2.59 16 19 C -0.12 -4.05 7.22 31.12 0.22 -3.83 16 20 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 21 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 22 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 23 H 0.04 1.64 5.80 -2.39 -0.01 1.62 16 24 H 0.08 1.79 7.78 -2.39 -0.02 1.77 16 25 H 0.04 1.37 5.68 -2.39 -0.01 1.36 16 26 H 0.05 1.44 8.13 -2.39 -0.02 1.42 16 27 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.11 2.40 7.30 -2.39 -0.02 2.39 16 29 H 0.28 15.17 8.31 -92.70 -0.77 14.40 16 30 H 0.06 2.46 7.41 -2.39 -0.02 2.44 16 31 H 0.10 2.96 4.76 -2.39 -0.01 2.95 16 32 H 0.12 2.09 7.62 -2.39 -0.02 2.07 16 33 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.09 2.52 8.10 -2.39 -0.02 2.50 16 35 H 0.06 2.27 8.09 -2.39 -0.02 2.25 16 Total: -1.00 -75.02 280.56 7.30 -67.72 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: 1.06 Total: 16.46 kcal Atomic # 6 Polarization: -32.72 SS G_CDS: 3.49 Total: -29.23 kcal Atomic # 7 Polarization: -54.50 SS G_CDS: 0.30 Total: -54.20 kcal Atomic # 8 Polarization: -48.25 SS G_CDS: 0.42 Total: -47.83 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -75.02 7.30 -67.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757141302.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.759 kcal (2) G-P(sol) polarization free energy of solvation -75.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds