Wall clock time and date at job start Sun Mar 29 2020 22:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 112.84619 * 2 1 4 4 C 1.53781 * 113.61609 * 131.19444 * 2 1 3 5 5 C 1.53781 * 87.08070 * 139.98229 * 4 2 1 6 6 C 1.50697 * 113.61630 * 219.93625 * 5 4 2 7 7 O 1.20829 * 119.99796 * 358.46973 * 6 5 4 8 8 O 1.34227 * 120.00323 * 178.47308 * 6 5 4 9 9 C 1.45202 * 117.00113 * 180.02562 * 8 6 5 10 10 C 1.53001 * 109.46921 * 179.97438 * 9 8 6 11 11 C 1.50705 * 109.46880 * 179.97438 * 10 9 8 12 12 H 1.07992 * 119.99905 * 359.97438 * 11 10 9 13 13 C 1.37876 * 119.99705 * 179.97438 * 11 10 9 14 14 N 1.31509 * 120.00198 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99563 * 179.97438 * 13 11 10 16 16 H 1.48494 * 109.47450 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.46640 * 120.00703 * 15 13 11 18 18 H 1.48499 * 109.46918 * 239.99916 * 15 13 11 19 19 C 1.53786 * 87.17350 * 334.52830 * 5 4 2 20 20 H 1.09001 * 109.47020 * 288.79792 * 1 2 3 21 21 H 1.08999 * 109.47143 * 48.80711 * 1 2 3 22 22 H 1.09000 * 109.46828 * 168.80438 * 1 2 3 23 23 H 1.08998 * 109.46824 * 191.19965 * 3 2 1 24 24 H 1.08998 * 109.47383 * 311.19343 * 3 2 1 25 25 H 1.08998 * 109.47263 * 71.20245 * 3 2 1 26 26 H 1.08999 * 113.61181 * 25.43284 * 4 2 1 27 27 H 1.08998 * 113.61680 * 254.52836 * 4 2 1 28 28 H 1.09002 * 113.61445 * 89.11830 * 5 4 2 29 29 H 1.08997 * 109.46781 * 299.99903 * 9 8 6 30 30 H 1.08997 * 109.47330 * 59.99613 * 9 8 6 31 31 H 1.08999 * 109.47155 * 299.99149 * 10 9 8 32 32 H 1.08997 * 109.47344 * 59.99732 * 10 9 8 33 33 H 0.97006 * 120.00233 * 179.97438 * 14 13 11 34 34 H 1.08992 * 113.61675 * 140.02412 * 19 5 4 35 35 H 1.09000 * 113.60973 * 270.92699 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4100 0.0000 4 6 2.1461 -0.9280 1.0603 5 6 3.1924 -1.3135 0.0013 6 6 3.5423 -2.7793 0.0040 7 8 3.0325 -3.5206 0.8105 8 8 4.4204 -3.2614 -0.8895 9 6 4.7095 -4.6830 -0.8287 10 6 5.7233 -5.0442 -1.9162 11 6 6.0238 -6.5197 -1.8527 12 1 5.5404 -7.1377 -1.1107 13 6 6.9159 -7.0803 -2.7419 14 7 7.5050 -6.3276 -3.6452 15 14 7.2889 -8.9090 -2.6627 16 1 6.5027 -9.5276 -1.5653 17 1 6.9221 -9.5453 -3.9534 18 1 8.7381 -9.1080 -2.4071 19 6 2.1472 -0.9316 -1.0603 20 1 -0.3633 0.3312 0.9729 21 1 -0.3633 0.6768 -0.7733 22 1 -0.3633 -1.0081 -0.1995 23 1 3.1941 1.3534 -0.1996 24 1 1.6414 2.0076 -0.7733 25 1 1.9600 1.8734 0.9728 26 1 1.4946 -1.7522 1.3507 27 1 2.5651 -0.3970 1.9149 28 1 4.0711 -0.6686 0.0006 29 1 5.1226 -4.9282 0.1497 30 1 3.7907 -5.2477 -0.9870 31 1 5.3097 -4.7992 -2.8944 32 1 6.6422 -4.4795 -1.7583 33 1 8.1329 -6.7220 -4.2706 34 1 2.5672 -0.4036 -1.9163 35 1 1.4961 -1.7569 -1.3485 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797206493.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:07 Heat of formation + Delta-G solvation = -94.808699 kcal Electronic energy + Delta-G solvation = -15382.077642 eV Core-core repulsion = 12765.990038 eV Total energy + Delta-G solvation = -2616.087604 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.136 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.62990 -38.78467 -35.94427 -33.33013 -31.24903 -30.14488 -27.62921 -25.90955 -25.53870 -23.95576 -20.96316 -20.06780 -18.39861 -17.40412 -16.30898 -15.95067 -15.82581 -15.04582 -14.52717 -14.32297 -13.65027 -13.54307 -12.99838 -12.86399 -12.46940 -12.36325 -12.03173 -11.72904 -11.35467 -11.17341 -11.07122 -10.91654 -10.74349 -10.64599 -10.49958 -10.25793 -10.03243 -9.61543 -9.53855 -9.25892 -8.44050 -6.09786 -4.14021 2.60877 3.25852 3.27897 3.35739 3.41629 4.23980 4.36925 4.39925 4.57954 4.63937 5.01582 5.26816 5.29089 5.38851 5.43505 5.45276 5.62170 5.67752 5.68102 5.74792 5.83309 5.94811 5.98488 6.11527 6.13444 6.18519 6.34535 6.66246 7.05704 7.57864 7.63874 7.88143 8.22096 8.32023 8.91842 9.50407 11.01786 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.065751 B = 0.004415 C = 0.004300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 425.747065 B = 6339.897770 C = 6510.078585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.091 4.091 3 C -0.129 4.129 4 C -0.111 4.111 5 C -0.111 4.111 6 C 0.463 3.537 7 O -0.520 6.520 8 O -0.356 6.356 9 C 0.074 3.926 10 C 0.024 3.976 11 C -0.526 4.526 12 H 0.060 0.940 13 C 0.060 3.940 14 N -0.890 5.890 15 Si 0.899 3.101 16 H -0.271 1.271 17 H -0.282 1.282 18 H -0.282 1.282 19 C -0.113 4.113 20 H 0.056 0.944 21 H 0.056 0.944 22 H 0.057 0.943 23 H 0.060 0.940 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.096 0.904 27 H 0.074 0.926 28 H 0.121 0.879 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.028 0.972 32 H 0.028 0.972 33 H 0.263 0.737 34 H 0.081 0.919 35 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.940 14.263 6.105 18.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.091 4.091 3 C -0.186 4.186 4 C -0.148 4.148 5 C -0.130 4.130 6 C 0.306 3.694 7 O -0.410 6.410 8 O -0.272 6.272 9 C 0.001 3.999 10 C -0.013 4.013 11 C -0.564 4.564 12 H 0.078 0.922 13 C -0.142 4.142 14 N -0.529 5.529 15 Si 0.727 3.273 16 H -0.196 1.196 17 H -0.208 1.208 18 H -0.208 1.208 19 C -0.150 4.150 20 H 0.075 0.925 21 H 0.075 0.925 22 H 0.076 0.924 23 H 0.079 0.921 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.114 0.886 27 H 0.093 0.907 28 H 0.139 0.861 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.046 0.954 32 H 0.046 0.954 33 H 0.072 0.928 34 H 0.099 0.901 35 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -10.935 13.992 6.175 18.801 hybrid contribution 0.374 -1.203 0.022 1.260 sum -10.561 12.789 6.197 17.706 Atomic orbital electron populations 1.21717 0.93771 1.02011 1.01695 1.21843 0.95638 0.94816 0.96788 1.21617 1.00844 0.94250 1.01937 1.23053 0.96611 0.99224 0.95925 1.22464 0.99568 0.90379 1.00633 1.23445 0.76397 0.91266 0.78283 1.90603 1.51593 1.60197 1.38563 1.86539 1.56492 1.30629 1.53539 1.23619 1.00178 0.74036 1.02036 1.19170 0.92961 0.96561 0.92610 1.21031 1.25664 0.92726 1.16976 0.92224 1.24985 0.95635 0.98468 0.95081 1.69985 1.28569 1.35535 1.18774 0.86419 0.78172 0.84709 0.78047 1.19591 1.20824 1.20819 1.23070 0.96336 0.99246 0.96353 0.92458 0.92509 0.92360 0.92129 0.92217 0.92240 0.88582 0.90739 0.86103 0.92422 0.92452 0.95368 0.95380 0.92778 0.90054 0.89470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.13 9.19 37.16 0.34 -0.79 16 2 C -0.09 -0.85 1.39 -153.55 -0.21 -1.06 16 3 C -0.13 -1.00 9.08 37.16 0.34 -0.66 16 4 C -0.11 -1.24 6.55 -25.92 -0.17 -1.41 16 5 C -0.11 -1.45 3.90 -90.96 -0.36 -1.80 16 6 C 0.46 8.38 7.48 36.00 0.27 8.65 16 7 O -0.52 -10.64 15.66 -18.75 -0.29 -10.94 16 8 O -0.36 -7.40 10.22 -39.25 -0.40 -7.80 16 9 C 0.07 1.70 5.40 37.16 0.20 1.90 16 10 C 0.02 0.64 5.35 -27.88 -0.15 0.50 16 11 C -0.53 -15.03 9.11 -34.44 -0.31 -15.34 16 12 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 13 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 14 N -0.89 -26.60 13.29 55.43 0.74 -25.87 16 15 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 16 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 C -0.11 -1.26 6.76 -25.77 -0.17 -1.44 16 20 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 21 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 22 H 0.06 0.52 7.95 -51.93 -0.41 0.11 16 23 H 0.06 0.47 7.35 -51.93 -0.38 0.08 16 24 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.10 1.21 7.41 -51.93 -0.39 0.83 16 27 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 28 H 0.12 1.37 7.66 -51.93 -0.40 0.97 16 29 H 0.06 1.32 8.13 -51.93 -0.42 0.90 16 30 H 0.06 1.31 8.13 -51.93 -0.42 0.89 16 31 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 34 H 0.08 0.83 8.11 -51.93 -0.42 0.41 16 35 H 0.09 1.05 7.92 -51.93 -0.41 0.63 16 LS Contribution 295.37 15.07 4.45 4.45 Total: -1.00 -31.23 295.37 -6.60 -37.84 By element: Atomic # 1 Polarization: 1.32 SS G_CDS: -5.75 Total: -4.43 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: -0.32 Total: -9.81 kcal Atomic # 7 Polarization: -26.60 SS G_CDS: 0.74 Total: -25.87 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: -0.69 Total: -18.74 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.23 -6.60 -37.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797206493.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.971 kcal (2) G-P(sol) polarization free energy of solvation -31.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds