Wall clock time and date at job start Sun Mar 29 2020 22:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 112.84619 * 2 1 4 4 C 1.53781 * 113.61609 * 131.19444 * 2 1 3 5 5 C 1.53781 * 87.08070 * 139.98229 * 4 2 1 6 6 C 1.50697 * 113.61630 * 219.93625 * 5 4 2 7 7 O 1.20829 * 119.99796 * 358.46973 * 6 5 4 8 8 O 1.34227 * 120.00323 * 178.47308 * 6 5 4 9 9 C 1.45202 * 117.00113 * 180.02562 * 8 6 5 10 10 C 1.53001 * 109.46921 * 179.97438 * 9 8 6 11 11 C 1.50705 * 109.46880 * 179.97438 * 10 9 8 12 12 H 1.07992 * 119.99905 * 359.97438 * 11 10 9 13 13 C 1.37876 * 119.99705 * 179.97438 * 11 10 9 14 14 N 1.31509 * 120.00198 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99563 * 179.97438 * 13 11 10 16 16 H 1.48494 * 109.47450 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.46640 * 120.00703 * 15 13 11 18 18 H 1.48499 * 109.46918 * 239.99916 * 15 13 11 19 19 C 1.53786 * 87.17350 * 334.52830 * 5 4 2 20 20 H 1.09001 * 109.47020 * 288.79792 * 1 2 3 21 21 H 1.08999 * 109.47143 * 48.80711 * 1 2 3 22 22 H 1.09000 * 109.46828 * 168.80438 * 1 2 3 23 23 H 1.08998 * 109.46824 * 191.19965 * 3 2 1 24 24 H 1.08998 * 109.47383 * 311.19343 * 3 2 1 25 25 H 1.08998 * 109.47263 * 71.20245 * 3 2 1 26 26 H 1.08999 * 113.61181 * 25.43284 * 4 2 1 27 27 H 1.08998 * 113.61680 * 254.52836 * 4 2 1 28 28 H 1.09002 * 113.61445 * 89.11830 * 5 4 2 29 29 H 1.08997 * 109.46781 * 299.99903 * 9 8 6 30 30 H 1.08997 * 109.47330 * 59.99613 * 9 8 6 31 31 H 1.08999 * 109.47155 * 299.99149 * 10 9 8 32 32 H 1.08997 * 109.47344 * 59.99732 * 10 9 8 33 33 H 0.97006 * 120.00233 * 179.97438 * 14 13 11 34 34 H 1.08992 * 113.61675 * 140.02412 * 19 5 4 35 35 H 1.09000 * 113.60973 * 270.92699 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4100 0.0000 4 6 2.1461 -0.9280 1.0603 5 6 3.1924 -1.3135 0.0013 6 6 3.5423 -2.7793 0.0040 7 8 3.0325 -3.5206 0.8105 8 8 4.4204 -3.2614 -0.8895 9 6 4.7095 -4.6830 -0.8287 10 6 5.7233 -5.0442 -1.9162 11 6 6.0238 -6.5197 -1.8527 12 1 5.5404 -7.1377 -1.1107 13 6 6.9159 -7.0803 -2.7419 14 7 7.5050 -6.3276 -3.6452 15 14 7.2889 -8.9090 -2.6627 16 1 6.5027 -9.5276 -1.5653 17 1 6.9221 -9.5453 -3.9534 18 1 8.7381 -9.1080 -2.4071 19 6 2.1472 -0.9316 -1.0603 20 1 -0.3633 0.3312 0.9729 21 1 -0.3633 0.6768 -0.7733 22 1 -0.3633 -1.0081 -0.1995 23 1 3.1941 1.3534 -0.1996 24 1 1.6414 2.0076 -0.7733 25 1 1.9600 1.8734 0.9728 26 1 1.4946 -1.7522 1.3507 27 1 2.5651 -0.3970 1.9149 28 1 4.0711 -0.6686 0.0006 29 1 5.1226 -4.9282 0.1497 30 1 3.7907 -5.2477 -0.9870 31 1 5.3097 -4.7992 -2.8944 32 1 6.6422 -4.4795 -1.7583 33 1 8.1329 -6.7220 -4.2706 34 1 2.5672 -0.4036 -1.9163 35 1 1.4961 -1.7569 -1.3485 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797206493.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:07 Heat of formation + Delta-G solvation = -111.880720 kcal Electronic energy + Delta-G solvation = -15382.817941 eV Core-core repulsion = 12765.990038 eV Total energy + Delta-G solvation = -2616.827902 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.90650 -40.00332 -37.58958 -35.46978 -32.56701 -31.77565 -28.24012 -27.43135 -26.74295 -25.43657 -22.94378 -21.46098 -19.27703 -18.97717 -18.18836 -17.60813 -17.35604 -16.52021 -16.02708 -15.21444 -14.92744 -14.82741 -14.41207 -14.04774 -13.85141 -13.66737 -13.16434 -13.02040 -12.73671 -12.64145 -12.61288 -12.44989 -12.18513 -11.87963 -11.75876 -11.52791 -11.50405 -11.38466 -11.07350 -11.00347 -10.63933 -8.29035 -6.42694 1.14664 1.39913 1.40711 1.54267 1.79343 2.39149 3.05211 3.36052 3.48301 3.62150 3.72138 4.02466 4.17674 4.23864 4.33895 4.47743 4.64190 4.66089 4.73027 4.84903 4.88939 4.93817 5.04017 5.17974 5.21319 5.23511 5.25557 5.43084 5.44821 5.54284 5.59413 5.72449 6.04149 6.69363 6.74879 7.27342 8.83852 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.065751 B = 0.004415 C = 0.004300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 425.747065 B = 6339.897770 C = 6510.078585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.075 4.075 3 C -0.129 4.129 4 C -0.110 4.110 5 C -0.113 4.113 6 C 0.459 3.541 7 O -0.546 6.546 8 O -0.365 6.365 9 C 0.088 3.912 10 C 0.031 3.969 11 C -0.552 4.552 12 H 0.064 0.936 13 C 0.007 3.993 14 N -0.926 5.926 15 Si 0.975 3.025 16 H -0.263 1.263 17 H -0.274 1.274 18 H -0.274 1.274 19 C -0.116 4.116 20 H 0.067 0.933 21 H 0.069 0.931 22 H 0.046 0.954 23 H 0.061 0.939 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.091 0.909 28 H 0.143 0.857 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.006 0.994 32 H 0.007 0.993 33 H 0.268 0.732 34 H 0.093 0.907 35 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.450 14.913 6.591 19.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.075 4.075 3 C -0.186 4.186 4 C -0.148 4.148 5 C -0.132 4.132 6 C 0.304 3.696 7 O -0.437 6.437 8 O -0.282 6.282 9 C 0.015 3.985 10 C -0.006 4.006 11 C -0.590 4.590 12 H 0.082 0.918 13 C -0.192 4.192 14 N -0.565 5.565 15 Si 0.798 3.202 16 H -0.187 1.187 17 H -0.199 1.199 18 H -0.199 1.199 19 C -0.153 4.153 20 H 0.086 0.914 21 H 0.088 0.912 22 H 0.066 0.934 23 H 0.080 0.920 24 H 0.089 0.911 25 H 0.089 0.911 26 H 0.096 0.904 27 H 0.109 0.891 28 H 0.160 0.840 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.025 0.975 32 H 0.025 0.975 33 H 0.077 0.923 34 H 0.112 0.888 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.460 14.663 6.670 19.769 hybrid contribution 0.504 -1.341 -0.123 1.438 sum -10.956 13.321 6.547 18.449 Atomic orbital electron populations 1.21728 0.92942 1.01798 1.02776 1.21800 0.96271 0.95136 0.94341 1.21644 1.00879 0.92959 1.03085 1.23090 0.95792 0.99266 0.96633 1.22807 1.01073 0.86565 1.02742 1.24565 0.74934 0.93179 0.76901 1.90585 1.52300 1.61380 1.39411 1.86542 1.57742 1.29017 1.54873 1.23144 0.99054 0.75798 1.00479 1.18981 0.92849 0.96039 0.92737 1.21402 1.26347 0.93669 1.17552 0.91818 1.25972 0.95100 1.03798 0.94360 1.70099 1.29050 1.37924 1.19454 0.85252 0.78262 0.78163 0.78476 1.18711 1.19926 1.19918 1.23154 0.95691 0.99521 0.96967 0.91435 0.91210 0.93449 0.92012 0.91106 0.91072 0.90393 0.89084 0.83969 0.92428 0.92512 0.97516 0.97504 0.92265 0.88848 0.90777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.19 71.98 0.66 -1.32 16 2 C -0.08 -1.24 1.39 -51.56 -0.07 -1.31 16 3 C -0.13 -1.57 9.08 71.98 0.65 -0.92 16 4 C -0.11 -2.30 6.55 31.12 0.20 -2.09 16 5 C -0.11 -2.80 3.90 -11.01 -0.04 -2.85 16 6 C 0.46 16.65 7.48 71.24 0.53 17.19 16 7 O -0.55 -22.57 15.66 21.96 0.34 -22.23 16 8 O -0.37 -15.42 10.22 -51.39 -0.53 -15.95 16 9 C 0.09 4.17 5.40 71.98 0.39 4.56 16 10 C 0.03 1.72 5.35 29.85 0.16 1.88 16 11 C -0.55 -31.98 9.11 25.60 0.23 -31.74 16 12 H 0.06 3.55 7.74 -2.91 -0.02 3.53 16 13 C 0.01 0.39 5.46 84.66 0.46 0.85 16 14 N -0.93 -55.94 13.29 21.45 0.28 -55.66 16 15 Si 0.98 44.06 29.54 68.60 2.03 46.08 16 16 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 17 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 18 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 19 C -0.12 -2.45 6.76 31.21 0.21 -2.23 16 20 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 21 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 22 H 0.05 0.79 7.95 -2.39 -0.02 0.77 16 23 H 0.06 0.76 7.35 -2.39 -0.02 0.74 16 24 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.08 1.93 7.41 -2.39 -0.02 1.91 16 27 H 0.09 1.59 8.10 -2.39 -0.02 1.57 16 28 H 0.14 2.93 7.66 -2.39 -0.02 2.91 16 29 H 0.06 2.69 8.13 -2.39 -0.02 2.67 16 30 H 0.06 2.65 8.13 -2.39 -0.02 2.63 16 31 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.01 0.38 8.14 -2.39 -0.02 0.37 16 33 H 0.27 15.03 8.31 -92.70 -0.77 14.26 16 34 H 0.09 1.74 8.11 -2.39 -0.02 1.72 16 35 H 0.07 1.76 7.92 -2.39 -0.02 1.74 16 Total: -1.00 -67.22 295.37 6.56 -60.66 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: 1.04 Total: 5.07 kcal Atomic # 6 Polarization: -21.37 SS G_CDS: 3.39 Total: -17.98 kcal Atomic # 7 Polarization: -55.94 SS G_CDS: 0.28 Total: -55.66 kcal Atomic # 8 Polarization: -37.99 SS G_CDS: -0.18 Total: -38.18 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.08 kcal Total: -67.22 6.56 -60.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797206493.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.223 kcal (2) G-P(sol) polarization free energy of solvation -67.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds