Wall clock time and date at job start Sun Mar 29 2020 22:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99650 * 2 1 4 4 H 1.48503 * 109.47097 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47257 * 300.00062 * 3 2 1 6 6 H 1.48502 * 109.46973 * 60.00433 * 3 2 1 7 7 C 1.37880 * 120.00308 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99662 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99405 * 359.97438 * 7 2 1 10 10 C 1.53008 * 109.46783 * 179.97438 * 9 7 2 11 11 C 1.50692 * 109.47286 * 179.97438 * 10 9 7 12 12 O 1.20827 * 120.00309 * 0.02562 * 11 10 9 13 13 O 1.34232 * 120.00115 * 180.02562 * 11 10 9 14 14 C 1.45200 * 117.00067 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.46978 * 89.99944 * 14 13 11 16 16 C 1.52999 * 109.47317 * 179.97438 * 15 14 13 17 17 C 1.53005 * 109.47159 * 300.00546 * 16 15 14 18 18 C 1.52997 * 109.47452 * 59.99536 * 17 16 15 19 19 C 1.53000 * 109.47046 * 209.99733 * 14 13 11 20 20 H 0.96998 * 120.00131 * 359.97438 * 1 2 3 21 21 H 1.08997 * 109.47838 * 60.00509 * 9 7 2 22 22 H 1.09000 * 109.47624 * 299.99634 * 9 7 2 23 23 H 1.09008 * 109.46949 * 59.99481 * 10 9 7 24 24 H 1.09000 * 109.46759 * 300.00185 * 10 9 7 25 25 H 1.09002 * 109.47097 * 330.00009 * 14 13 11 26 26 H 1.08996 * 109.47853 * 300.00072 * 15 14 13 27 27 H 1.09002 * 109.47153 * 60.00100 * 15 14 13 28 28 H 1.09000 * 109.47486 * 180.02562 * 16 15 14 29 29 H 1.09002 * 109.46716 * 60.00091 * 16 15 14 30 30 H 1.09002 * 109.46935 * 299.99411 * 17 16 15 31 31 H 1.09001 * 109.46812 * 179.97438 * 17 16 15 32 32 H 1.08993 * 109.47194 * 179.97438 * 18 17 16 33 33 H 1.09002 * 109.46695 * 59.99734 * 18 17 16 34 34 H 1.08992 * 109.47399 * 300.00084 * 19 14 13 35 35 H 1.09004 * 109.46724 * 60.00570 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 6 1.4919 -4.9671 -0.0012 12 8 0.2837 -4.9672 -0.0003 13 8 2.1631 -6.1296 -0.0016 14 6 1.3723 -7.3473 -0.0015 15 6 1.0941 -7.7748 -1.4440 16 6 0.2614 -9.0583 -1.4440 17 6 1.0321 -10.1663 -0.7233 18 6 1.3103 -9.7388 0.7192 19 6 2.1426 -8.4555 0.7192 20 1 -0.4850 0.8400 0.0004 21 1 0.6241 -2.5567 -0.8903 22 1 0.6247 -2.5571 0.8897 23 1 2.8728 -3.6046 0.8877 24 1 2.8713 -3.6038 -0.8923 25 1 0.4282 -7.1674 0.5127 26 1 0.5454 -6.9854 -1.9576 27 1 2.0382 -7.9547 -1.9582 28 1 0.0635 -9.3631 -2.4716 29 1 -0.6827 -8.8788 -0.9297 30 1 1.9763 -10.3458 -1.2376 31 1 0.4386 -11.0806 -0.7229 32 1 1.8590 -10.5283 1.2327 33 1 0.3662 -9.5593 1.2334 34 1 3.0866 -8.6354 0.2051 35 1 2.3407 -8.1510 1.7469 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812823018.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:28 Heat of formation + Delta-G solvation = -128.370888 kcal Electronic energy + Delta-G solvation = -15548.706403 eV Core-core repulsion = 12931.163434 eV Total energy + Delta-G solvation = -2617.542970 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.136 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.18314 -38.05078 -35.64403 -33.55993 -31.20977 -30.93621 -29.94489 -26.01731 -23.15405 -22.72063 -21.58403 -20.00752 -19.61322 -17.33082 -16.48634 -15.86461 -15.65007 -14.85944 -14.45603 -14.26874 -14.13197 -13.48870 -13.09467 -12.64549 -12.38726 -12.25405 -12.22790 -11.34383 -11.27019 -11.14294 -10.97653 -10.87368 -10.81109 -10.62153 -10.45407 -10.04592 -9.92897 -9.81244 -9.49187 -9.14540 -8.37063 -6.00615 -4.05358 2.88405 3.15458 3.31456 3.38869 3.42757 4.44890 4.55805 4.58399 4.75448 5.02587 5.06267 5.18083 5.31207 5.33904 5.34888 5.47438 5.50300 5.69728 5.85450 5.90731 5.98331 5.98964 6.05392 6.14832 6.18230 6.22546 6.28220 6.72776 7.02981 7.68243 7.75312 7.99450 8.29022 8.46848 9.02158 9.58731 11.10487 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.073570 B = 0.004567 C = 0.004464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 380.500636 B = 6129.598878 C = 6270.866466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.059 3.941 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.528 4.528 8 H 0.059 0.941 9 C 0.033 3.967 10 C -0.104 4.104 11 C 0.455 3.545 12 O -0.506 6.506 13 O -0.363 6.363 14 C 0.085 3.915 15 C -0.135 4.135 16 C -0.116 4.116 17 C -0.122 4.122 18 C -0.116 4.116 19 C -0.115 4.115 20 H 0.261 0.739 21 H 0.025 0.975 22 H 0.025 0.975 23 H 0.091 0.909 24 H 0.091 0.909 25 H 0.082 0.918 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.891 -18.689 -0.615 19.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.566 4.566 8 H 0.077 0.923 9 C -0.005 4.005 10 C -0.142 4.142 11 C 0.299 3.701 12 O -0.393 6.393 13 O -0.281 6.281 14 C 0.030 3.970 15 C -0.173 4.173 16 C -0.154 4.154 17 C -0.160 4.160 18 C -0.154 4.154 19 C -0.153 4.153 20 H 0.071 0.929 21 H 0.044 0.956 22 H 0.044 0.956 23 H 0.109 0.891 24 H 0.110 0.890 25 H 0.100 0.900 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.357 -18.603 -0.615 18.913 hybrid contribution 0.257 0.920 -0.027 0.956 sum 3.614 -17.683 -0.642 18.059 Atomic orbital electron populations 1.70004 1.06105 1.26625 1.50094 1.25024 0.94844 0.99333 0.95134 0.86492 0.80042 0.83578 0.77614 1.19639 1.20968 1.20962 1.21205 0.93116 0.90664 1.51595 0.92257 1.19018 0.93242 0.89334 0.98856 1.21753 1.00644 0.87854 1.03908 1.24749 0.87961 0.85961 0.71438 1.90614 1.15932 1.87596 1.45164 1.86611 1.42096 1.14921 1.84471 1.22618 0.95310 0.82235 0.96805 1.21927 1.00963 0.98109 0.96322 1.21488 0.98784 0.94300 1.00801 1.21592 1.00547 0.98067 0.95758 1.21499 1.00287 0.96544 0.97071 1.21582 0.99288 0.93465 1.00925 0.92917 0.95623 0.95615 0.89054 0.89044 0.90043 0.91192 0.91108 0.91494 0.91647 0.91763 0.91836 0.91283 0.91676 0.90883 0.91115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.24 13.29 55.43 0.74 -26.50 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.53 -14.92 9.11 -34.44 -0.31 -15.24 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 9 C 0.03 0.88 4.26 -27.88 -0.12 0.76 16 10 C -0.10 -2.19 5.75 -27.88 -0.16 -2.35 16 11 C 0.46 9.28 7.93 36.00 0.29 9.57 16 12 O -0.51 -11.82 15.20 -18.75 -0.29 -12.10 16 13 O -0.36 -6.27 9.88 -39.26 -0.39 -6.65 16 14 C 0.09 1.23 2.45 -26.73 -0.07 1.16 16 15 C -0.14 -1.74 5.56 -26.73 -0.15 -1.89 16 16 C -0.12 -1.18 5.92 -26.73 -0.16 -1.33 16 17 C -0.12 -1.04 5.92 -26.73 -0.16 -1.20 16 18 C -0.12 -1.04 5.92 -26.76 -0.16 -1.19 16 19 C -0.12 -1.27 5.58 -26.75 -0.15 -1.42 16 20 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 21 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 22 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 23 H 0.09 1.76 8.14 -51.92 -0.42 1.34 16 24 H 0.09 1.77 8.14 -51.93 -0.42 1.34 16 25 H 0.08 1.29 7.16 -51.93 -0.37 0.92 16 26 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 290.21 15.07 4.37 4.37 Total: -1.00 -31.75 290.21 -7.65 -39.41 By element: Atomic # 1 Polarization: 2.29 SS G_CDS: -5.83 Total: -3.54 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: -1.24 Total: -11.53 kcal Atomic # 7 Polarization: -27.24 SS G_CDS: 0.74 Total: -26.50 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: -0.67 Total: -18.76 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -31.75 -7.65 -39.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812823018.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.962 kcal (2) G-P(sol) polarization free energy of solvation -31.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds