Wall clock time and date at job start Sun Mar 29 2020 22:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46507 * 109.47165 * 2 1 4 4 C 1.37090 * 119.99955 * 92.27006 * 3 2 1 5 5 H 1.08002 * 120.00300 * 217.00140 * 4 3 2 6 6 C 1.38955 * 120.00360 * 37.00887 * 4 3 2 7 7 N 1.31410 * 119.99669 * 20.43902 * 6 4 3 8 8 Si 1.86800 * 120.00078 * 200.44395 * 6 4 3 9 9 H 1.48496 * 109.46978 * 179.97438 * 8 6 4 10 10 H 1.48499 * 109.46938 * 299.99577 * 8 6 4 11 11 H 1.48491 * 109.47262 * 59.99555 * 8 6 4 12 12 C 1.34772 * 119.99498 * 272.27208 * 3 2 1 13 13 O 1.21301 * 119.99641 * 175.66301 * 12 3 2 14 14 C 1.50698 * 120.00265 * 355.66194 * 12 3 2 15 15 H 1.08997 * 110.89053 * 55.36608 * 14 12 3 16 16 C 1.54766 * 111.01484 * 291.46402 * 14 12 3 17 17 C 1.51678 * 102.48097 * 217.99016 * 16 14 12 18 18 C 1.50699 * 125.76959 * 195.25639 * 17 16 14 19 19 N 1.27646 * 108.46331 * 15.27692 * 17 16 14 20 20 O 1.41375 * 113.16858 * 0.32528 * 19 17 16 21 21 H 1.09001 * 109.47095 * 60.00530 * 1 2 3 22 22 H 1.09000 * 109.47031 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47200 * 300.00157 * 1 2 3 24 24 H 1.09003 * 109.47760 * 239.99330 * 2 1 3 25 25 H 1.09001 * 109.47095 * 119.99470 * 2 1 3 26 26 H 0.97004 * 119.99638 * 180.02562 * 7 6 4 27 27 H 1.09005 * 110.80430 * 336.23656 * 16 14 12 28 28 H 1.08995 * 110.81069 * 99.73600 * 16 14 12 29 29 H 1.09000 * 109.47526 * 89.99987 * 18 17 16 30 30 H 1.09004 * 109.47535 * 210.00077 * 18 17 16 31 31 H 1.09006 * 109.47430 * 329.99744 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2911 2.0118 1.1863 5 1 2.0700 3.0625 1.3028 6 6 2.8523 1.2993 2.2390 7 7 3.4848 0.1713 2.0055 8 14 2.7075 1.9446 3.9860 9 1 3.3841 1.0070 4.9177 10 1 3.3493 3.2808 4.0748 11 1 1.2735 2.0588 4.3542 12 6 2.1993 2.0319 -1.1663 13 8 2.5278 3.1996 -1.1647 14 6 1.9934 1.3089 -2.4724 15 1 0.9984 0.8664 -2.5190 16 6 3.0882 0.2372 -2.6920 17 6 3.3517 0.3384 -4.1823 18 6 4.0867 -0.6777 -5.0179 19 7 2.8460 1.4300 -4.6090 20 8 2.2221 2.1888 -3.5924 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 3.8763 -0.3263 2.7404 27 1 3.9860 0.4786 -2.1228 28 1 2.7178 -0.7540 -2.4307 29 1 3.3780 -1.4077 -5.4089 30 1 4.5848 -0.1748 -5.8468 31 1 4.8292 -1.1858 -4.4024 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823543408.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:15 Heat of formation + Delta-G solvation = -8.143075 kcal Electronic energy + Delta-G solvation = -16144.136737 eV Core-core repulsion = 13428.266893 eV Total energy + Delta-G solvation = -2715.869844 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.10481 -38.02817 -35.10168 -33.48956 -32.27019 -30.31587 -29.56334 -28.26953 -25.45621 -23.62752 -22.10365 -19.93478 -18.84096 -17.05443 -16.55758 -15.76925 -15.31203 -15.06325 -14.40415 -13.86738 -13.78518 -13.07688 -12.98201 -12.86654 -12.57065 -12.36606 -12.07551 -11.77365 -11.70414 -11.19725 -11.11115 -10.96453 -10.49204 -10.41927 -10.39357 -10.07916 -9.22976 -9.02315 -8.39896 -7.56104 -6.41688 -4.06417 2.05074 3.14310 3.21117 3.22072 3.33526 3.68202 4.11037 4.34314 4.59030 4.86340 4.95614 5.01323 5.28440 5.43561 5.47228 5.54609 5.59538 5.75317 5.92064 6.03861 6.14720 6.21919 6.27530 6.42580 6.80117 7.14133 7.51973 7.67984 8.16788 8.42195 9.08178 9.28048 9.87999 10.62261 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.038199 B = 0.008090 C = 0.007881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.821633 B = 3460.204289 C = 3551.797889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.088 3.912 3 N -0.433 5.433 4 C -0.309 4.309 5 H 0.092 0.908 6 C 0.038 3.962 7 N -0.870 5.870 8 Si 0.921 3.079 9 H -0.284 1.284 10 H -0.271 1.271 11 H -0.273 1.273 12 C 0.464 3.536 13 O -0.558 6.558 14 C 0.031 3.969 15 H 0.094 0.906 16 C -0.139 4.139 17 C 0.076 3.924 18 C -0.083 4.083 19 N -0.302 5.302 20 O -0.172 6.172 21 H 0.040 0.960 22 H 0.052 0.948 23 H 0.060 0.940 24 H 0.050 0.950 25 H 0.114 0.886 26 H 0.269 0.731 27 H 0.109 0.891 28 H 0.106 0.894 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.448 -8.279 -6.260 10.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.036 4.036 3 N -0.154 5.154 4 C -0.436 4.436 5 H 0.110 0.890 6 C -0.166 4.166 7 N -0.508 5.508 8 Si 0.748 3.252 9 H -0.209 1.209 10 H -0.196 1.196 11 H -0.198 1.198 12 C 0.249 3.751 13 O -0.440 6.440 14 C -0.032 4.032 15 H 0.111 0.889 16 C -0.178 4.178 17 C -0.117 4.117 18 C -0.140 4.140 19 N -0.043 5.043 20 O -0.191 6.191 21 H 0.060 0.940 22 H 0.071 0.929 23 H 0.079 0.921 24 H 0.069 0.931 25 H 0.132 0.868 26 H 0.079 0.921 27 H 0.127 0.873 28 H 0.125 0.875 29 H 0.105 0.895 30 H 0.099 0.901 31 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.405 -6.959 -6.987 9.961 hybrid contribution -0.063 -0.441 1.689 1.747 sum -1.468 -7.400 -5.298 9.218 Atomic orbital electron populations 1.22204 0.97978 1.00472 1.01740 1.21764 0.92087 0.85503 1.04237 1.43390 1.56053 1.12028 1.03916 1.19423 1.40024 0.96551 0.87631 0.88989 1.25377 0.94106 0.96512 1.00593 1.69879 1.31712 1.16417 1.32786 0.86075 0.78711 0.78928 0.81514 1.20900 1.19641 1.19797 1.19855 0.82817 0.88381 0.84029 1.90573 1.50378 1.16452 1.86549 1.23603 0.98984 0.90905 0.89666 0.88887 1.23096 1.00764 1.01139 0.92809 1.26270 0.95108 0.95212 0.95155 1.20381 0.99542 0.95452 0.98668 1.77760 1.07991 1.05065 1.13531 1.91338 1.76803 1.29264 1.21663 0.94042 0.92895 0.92093 0.93144 0.86784 0.92060 0.87322 0.87535 0.89490 0.90105 0.89498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.91 10.18 37.15 0.38 -2.53 16 2 C 0.09 1.81 5.39 -4.04 -0.02 1.79 16 3 N -0.43 -10.82 2.53 -114.81 -0.29 -11.11 16 4 C -0.31 -8.46 8.94 -14.93 -0.13 -8.59 16 5 H 0.09 2.67 7.71 -52.49 -0.40 2.26 16 6 C 0.04 0.99 4.97 -17.47 -0.09 0.90 16 7 N -0.87 -22.42 11.39 55.50 0.63 -21.79 16 8 Si 0.92 20.19 29.60 -169.99 -5.03 15.16 16 9 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 10 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 11 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 12 C 0.46 11.84 6.95 -10.99 -0.08 11.76 16 13 O -0.56 -16.75 16.43 -13.29 -0.22 -16.97 16 14 C 0.03 0.64 3.26 -26.95 -0.09 0.55 16 15 H 0.09 1.71 6.99 -51.93 -0.36 1.34 16 16 C -0.14 -2.33 5.59 -26.47 -0.15 -2.48 16 17 C 0.08 1.15 7.45 -78.58 -0.59 0.57 16 18 C -0.08 -0.79 10.49 36.00 0.38 -0.41 16 19 N -0.30 -5.74 12.45 35.65 0.44 -5.29 16 20 O -0.17 -3.92 11.83 -30.19 -0.36 -4.28 16 21 H 0.04 0.70 7.23 -51.93 -0.38 0.32 16 22 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 24 H 0.05 0.91 4.55 -51.93 -0.24 0.67 16 25 H 0.11 2.58 5.46 -51.93 -0.28 2.30 16 26 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 27 H 0.11 2.04 7.90 -51.93 -0.41 1.63 16 28 H 0.11 1.45 6.68 -51.93 -0.35 1.11 16 29 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 264.33 15.07 3.98 3.98 Total: -1.00 -32.93 264.33 -4.89 -37.82 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -3.67 Total: 0.92 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: -0.38 Total: 1.56 kcal Atomic # 7 Polarization: -38.98 SS G_CDS: 0.79 Total: -38.20 kcal Atomic # 8 Polarization: -20.67 SS G_CDS: -0.58 Total: -21.25 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.03 Total: 15.16 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -32.93 -4.89 -37.82 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823543408.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.675 kcal (2) G-P(sol) polarization free energy of solvation -32.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds