Wall clock time and date at job start Sun Mar 29 2020 22:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46507 * 109.47165 * 2 1 4 4 C 1.37090 * 119.99955 * 92.27006 * 3 2 1 5 5 H 1.08002 * 120.00300 * 217.00140 * 4 3 2 6 6 C 1.38955 * 120.00360 * 37.00887 * 4 3 2 7 7 N 1.31410 * 119.99669 * 20.43902 * 6 4 3 8 8 Si 1.86800 * 120.00078 * 200.44395 * 6 4 3 9 9 H 1.48496 * 109.46978 * 179.97438 * 8 6 4 10 10 H 1.48499 * 109.46938 * 299.99577 * 8 6 4 11 11 H 1.48491 * 109.47262 * 59.99555 * 8 6 4 12 12 C 1.34772 * 119.99498 * 272.27208 * 3 2 1 13 13 O 1.21301 * 119.99641 * 175.66301 * 12 3 2 14 14 C 1.50698 * 120.00265 * 355.66194 * 12 3 2 15 15 H 1.08997 * 110.89053 * 55.36608 * 14 12 3 16 16 C 1.54766 * 111.01484 * 291.46402 * 14 12 3 17 17 C 1.51678 * 102.48097 * 217.99016 * 16 14 12 18 18 C 1.50699 * 125.76959 * 195.25639 * 17 16 14 19 19 N 1.27646 * 108.46331 * 15.27692 * 17 16 14 20 20 O 1.41375 * 113.16858 * 0.32528 * 19 17 16 21 21 H 1.09001 * 109.47095 * 60.00530 * 1 2 3 22 22 H 1.09000 * 109.47031 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47200 * 300.00157 * 1 2 3 24 24 H 1.09003 * 109.47760 * 239.99330 * 2 1 3 25 25 H 1.09001 * 109.47095 * 119.99470 * 2 1 3 26 26 H 0.97004 * 119.99638 * 180.02562 * 7 6 4 27 27 H 1.09005 * 110.80430 * 336.23656 * 16 14 12 28 28 H 1.08995 * 110.81069 * 99.73600 * 16 14 12 29 29 H 1.09000 * 109.47526 * 89.99987 * 18 17 16 30 30 H 1.09004 * 109.47535 * 210.00077 * 18 17 16 31 31 H 1.09006 * 109.47430 * 329.99744 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2911 2.0118 1.1863 5 1 2.0700 3.0625 1.3028 6 6 2.8523 1.2993 2.2390 7 7 3.4848 0.1713 2.0055 8 14 2.7075 1.9446 3.9860 9 1 3.3841 1.0070 4.9177 10 1 3.3493 3.2808 4.0748 11 1 1.2735 2.0588 4.3542 12 6 2.1993 2.0319 -1.1663 13 8 2.5278 3.1996 -1.1647 14 6 1.9934 1.3089 -2.4724 15 1 0.9984 0.8664 -2.5190 16 6 3.0882 0.2372 -2.6920 17 6 3.3517 0.3384 -4.1823 18 6 4.0867 -0.6777 -5.0179 19 7 2.8460 1.4300 -4.6090 20 8 2.2221 2.1888 -3.5924 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 3.8763 -0.3263 2.7404 27 1 3.9860 0.4786 -2.1228 28 1 2.7178 -0.7540 -2.4307 29 1 3.3780 -1.4077 -5.4089 30 1 4.5848 -0.1748 -5.8468 31 1 4.8292 -1.1858 -4.4024 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823543408.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:14 Heat of formation + Delta-G solvation = -30.731325 kcal Electronic energy + Delta-G solvation = -16145.116237 eV Core-core repulsion = 13428.266893 eV Total energy + Delta-G solvation = -2716.849344 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.65744 -39.81159 -37.05116 -34.82996 -34.19982 -31.87930 -31.25269 -29.25923 -27.34326 -25.28945 -23.74198 -21.46043 -20.38719 -18.93918 -18.27582 -17.30959 -16.99023 -16.79511 -16.11575 -15.50256 -15.23099 -14.61018 -14.46599 -14.24378 -13.89702 -13.66322 -13.48055 -13.45549 -13.14228 -12.87215 -12.74153 -12.53128 -12.31481 -12.11953 -11.90261 -11.59145 -10.94957 -10.79624 -10.27138 -9.53035 -8.40609 -6.14254 0.81771 1.36056 1.40905 1.49875 1.77387 1.85030 2.31155 2.89343 2.96018 3.10567 3.43877 3.60813 3.81036 3.91884 4.20227 4.43108 4.56122 4.62193 4.72605 4.77844 4.81807 4.82917 5.00514 5.27593 5.31397 5.40991 5.52323 6.13237 6.31282 6.48390 7.08184 7.31778 7.91920 8.61573 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.038199 B = 0.008090 C = 0.007881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.821633 B = 3460.204289 C = 3551.797889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.084 3.916 3 N -0.435 5.435 4 C -0.351 4.351 5 H 0.059 0.941 6 C 0.014 3.986 7 N -0.878 5.878 8 Si 0.982 3.018 9 H -0.265 1.265 10 H -0.281 1.281 11 H -0.264 1.264 12 C 0.444 3.556 13 O -0.624 6.624 14 C 0.035 3.965 15 H 0.118 0.882 16 C -0.136 4.136 17 C 0.108 3.892 18 C -0.082 4.082 19 N -0.335 5.335 20 O -0.226 6.226 21 H 0.046 0.954 22 H 0.093 0.907 23 H 0.041 0.959 24 H 0.080 0.920 25 H 0.097 0.903 26 H 0.278 0.722 27 H 0.088 0.912 28 H 0.148 0.852 29 H 0.120 0.880 30 H 0.089 0.911 31 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.385 -11.441 -6.525 13.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.038 4.038 3 N -0.154 5.154 4 C -0.479 4.479 5 H 0.077 0.923 6 C -0.191 4.191 7 N -0.514 5.514 8 Si 0.805 3.195 9 H -0.190 1.190 10 H -0.207 1.207 11 H -0.189 1.189 12 C 0.232 3.768 13 O -0.510 6.510 14 C -0.027 4.027 15 H 0.135 0.865 16 C -0.175 4.175 17 C -0.085 4.085 18 C -0.139 4.139 19 N -0.081 5.081 20 O -0.240 6.240 21 H 0.065 0.935 22 H 0.112 0.888 23 H 0.060 0.940 24 H 0.098 0.902 25 H 0.115 0.885 26 H 0.088 0.912 27 H 0.106 0.894 28 H 0.166 0.834 29 H 0.139 0.861 30 H 0.107 0.893 31 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -1.369 -10.168 -7.230 12.551 hybrid contribution 0.008 0.433 1.769 1.821 sum -1.361 -9.735 -5.461 11.245 Atomic orbital electron populations 1.22134 0.95474 1.02892 1.01105 1.21975 0.94146 0.82987 1.04726 1.43650 1.55129 1.13410 1.03225 1.19335 1.42813 0.95973 0.89780 0.92322 1.26044 0.92942 0.96598 1.03467 1.69914 1.30747 1.16605 1.34158 0.85189 0.79097 0.78088 0.77143 1.18951 1.20681 1.18899 1.20734 0.82061 0.88050 0.85947 1.90509 1.53449 1.19295 1.87777 1.23508 1.01443 0.91063 0.86713 0.86476 1.23144 0.98773 1.01741 0.93830 1.27137 0.92428 0.94352 0.94547 1.20734 1.00257 0.94476 0.98447 1.77820 1.11103 1.06795 1.12390 1.91304 1.77985 1.31828 1.22841 0.93496 0.88817 0.93997 0.90199 0.88527 0.91198 0.89398 0.83405 0.86141 0.89261 0.87004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.23 10.18 71.98 0.73 -4.50 16 2 C 0.08 3.36 5.39 86.38 0.47 3.82 16 3 N -0.43 -22.22 2.53 -635.53 -1.61 -23.83 16 4 C -0.35 -19.97 8.94 84.04 0.75 -19.22 16 5 H 0.06 3.65 7.71 -2.91 -0.02 3.62 16 6 C 0.01 0.70 4.97 84.93 0.42 1.12 16 7 N -0.88 -44.52 11.39 21.66 0.25 -44.27 16 8 Si 0.98 41.32 29.60 68.60 2.03 43.35 16 9 H -0.27 -10.33 7.11 99.48 0.71 -9.63 16 10 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 11 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 12 C 0.44 23.56 6.95 87.66 0.61 24.17 16 13 O -0.62 -39.94 16.43 14.91 0.25 -39.70 16 14 C 0.03 1.43 3.26 30.45 0.10 1.53 16 15 H 0.12 4.14 6.99 -2.39 -0.02 4.13 16 16 C -0.14 -4.27 5.59 30.76 0.17 -4.10 16 17 C 0.11 2.99 7.45 46.89 0.35 3.34 16 18 C -0.08 -1.18 10.49 71.24 0.75 -0.43 16 19 N -0.33 -12.47 12.45 -40.62 -0.51 -12.98 16 20 O -0.23 -10.54 11.83 -20.28 -0.24 -10.78 16 21 H 0.05 1.49 7.23 -2.39 -0.02 1.47 16 22 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 23 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 24 H 0.08 2.65 4.55 -2.39 -0.01 2.63 16 25 H 0.10 4.25 5.46 -2.39 -0.01 4.23 16 26 H 0.28 13.07 8.31 -92.71 -0.77 12.30 16 27 H 0.09 3.22 7.90 -2.38 -0.02 3.20 16 28 H 0.15 3.37 6.68 -2.39 -0.02 3.36 16 29 H 0.12 1.08 8.14 -2.39 -0.02 1.07 16 30 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 31 H 0.11 1.15 8.14 -2.38 -0.02 1.13 16 Total: -1.00 -77.14 264.33 5.66 -71.48 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: 1.14 Total: 10.98 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: 4.35 Total: 5.74 kcal Atomic # 7 Polarization: -79.21 SS G_CDS: -1.87 Total: -81.08 kcal Atomic # 8 Polarization: -50.48 SS G_CDS: 0.01 Total: -50.48 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.35 kcal Total: -77.14 5.66 -71.48 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823543408.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.753 kcal (2) G-P(sol) polarization free energy of solvation -77.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds