Wall clock time and date at job start Sun Mar 29 2020 21:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.27644 * 125.76416 * 2 1 4 4 O 1.41385 * 113.16632 * 179.65304 * 3 2 1 5 5 C 1.44256 * 107.50667 * 17.37168 * 4 3 2 6 6 H 1.08995 * 111.01215 * 92.99106 * 5 4 3 7 7 C 1.50699 * 111.00730 * 216.82435 * 5 4 3 8 8 O 1.21285 * 120.00195 * 3.54636 * 7 5 4 9 9 N 1.34773 * 120.00085 * 183.54538 * 7 5 4 10 10 C 1.46505 * 120.00255 * 180.27818 * 9 7 5 11 11 H 1.08999 * 109.46984 * 34.71873 * 10 9 7 12 12 C 1.53001 * 109.46570 * 274.72142 * 10 9 7 13 13 C 1.50699 * 109.47218 * 154.72482 * 10 9 7 14 14 H 1.08003 * 120.00074 * 5.45526 * 13 10 9 15 15 C 1.37878 * 119.99860 * 185.45856 * 13 10 9 16 16 N 1.31509 * 119.99884 * 9.55788 * 15 13 10 17 17 Si 1.86800 * 119.99780 * 189.55736 * 15 13 10 18 18 H 1.48499 * 109.47184 * 84.99346 * 17 15 13 19 19 H 1.48497 * 109.46967 * 204.99406 * 17 15 13 20 20 H 1.48501 * 109.47375 * 324.99389 * 17 15 13 21 21 C 1.51675 * 125.76757 * 179.97438 * 2 1 3 22 22 H 1.09003 * 109.47088 * 359.97438 * 1 2 3 23 23 H 1.08997 * 109.47011 * 119.97844 * 1 2 3 24 24 H 1.09001 * 109.47377 * 239.97800 * 1 2 3 25 25 H 0.97000 * 119.99633 * 359.97438 * 9 7 5 26 26 H 1.08999 * 109.46772 * 183.67537 * 12 10 9 27 27 H 1.09000 * 109.47586 * 303.67332 * 12 10 9 28 28 H 1.08997 * 109.47326 * 63.68046 * 12 10 9 29 29 H 0.97002 * 119.99736 * 179.97438 * 16 15 13 30 30 H 1.09003 * 110.80902 * 46.50238 * 21 2 1 31 31 H 1.08994 * 110.81047 * 282.98922 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2530 1.0357 0.0000 4 8 3.6328 0.7274 0.0079 5 6 3.7720 -0.6501 -0.3973 6 1 3.9333 -0.7268 -1.4725 7 6 4.8833 -1.3271 0.3626 8 8 5.4768 -0.7260 1.2328 9 7 5.2177 -2.6007 0.0752 10 6 6.2941 -3.2610 0.8181 11 1 6.2885 -2.9137 1.8513 12 6 7.6400 -2.9231 0.1738 13 6 6.0832 -4.7528 0.7883 14 1 5.2843 -5.1736 0.1958 15 6 6.9103 -5.5806 1.5176 16 7 7.7582 -5.0672 2.3819 17 14 6.8264 -7.4313 1.2778 18 1 7.6844 -7.8211 0.1301 19 1 7.3055 -8.1119 2.5075 20 1 5.4228 -7.8320 1.0050 21 6 2.3936 -1.2307 0.0006 22 1 -0.3633 1.0277 0.0005 23 1 -0.3633 -0.5135 -0.8902 24 1 -0.3634 -0.5142 0.8898 25 1 4.7428 -3.0816 -0.6205 26 1 8.4344 -3.4660 0.6860 27 1 7.6223 -3.2113 -0.8773 28 1 7.8224 -1.8515 0.2537 29 1 8.3398 -5.6497 2.8952 30 1 2.0508 -1.9552 -0.7383 31 1 2.4341 -1.6783 0.9935 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000824689784.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:16 Heat of formation + Delta-G solvation = -48.979949 kcal Electronic energy + Delta-G solvation = -15508.286084 eV Core-core repulsion = 12790.645421 eV Total energy + Delta-G solvation = -2717.640664 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.67418 -39.95913 -36.77772 -34.87849 -34.43828 -32.45972 -30.50253 -29.25999 -27.33239 -25.75031 -22.98400 -21.38249 -20.78920 -19.27027 -17.94601 -17.49199 -17.09400 -16.76722 -16.20307 -15.69540 -15.20064 -14.63752 -14.50445 -14.24220 -13.87043 -13.71780 -13.48353 -13.11874 -13.07652 -12.94246 -12.70549 -12.59889 -12.38113 -12.14420 -11.69279 -11.19244 -11.02924 -10.59061 -10.40837 -9.90275 -8.21149 -6.35587 0.81647 1.46319 1.47791 1.49608 1.57505 1.71020 2.38873 2.60809 3.04562 3.11881 3.39403 3.57386 3.76919 3.94014 4.42360 4.58012 4.67997 4.72470 4.80185 4.83562 4.85558 4.99239 5.31465 5.35164 5.53985 5.58469 5.81774 5.98348 6.33038 6.71383 6.81958 7.28012 7.43046 8.88430 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.041841 B = 0.006220 C = 0.005657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.041797 B = 4500.185408 C = 4948.539782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.108 3.892 3 N -0.336 5.336 4 O -0.225 6.225 5 C 0.026 3.974 6 H 0.139 0.861 7 C 0.503 3.497 8 O -0.591 6.591 9 N -0.689 5.689 10 C 0.268 3.732 11 H 0.000 1.000 12 C -0.130 4.130 13 C -0.546 4.546 14 H 0.082 0.918 15 C 0.014 3.986 16 N -0.922 5.922 17 Si 0.974 3.026 18 H -0.271 1.271 19 H -0.291 1.291 20 H -0.258 1.258 21 C -0.139 4.139 22 H 0.083 0.917 23 H 0.124 0.876 24 H 0.110 0.890 25 H 0.411 0.589 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.011 0.989 29 H 0.265 0.735 30 H 0.161 0.839 31 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.721 1.736 -9.191 18.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.085 4.085 3 N -0.083 5.083 4 O -0.239 6.239 5 C -0.036 4.036 6 H 0.157 0.843 7 C 0.288 3.712 8 O -0.471 6.471 9 N -0.339 5.339 10 C 0.164 3.836 11 H 0.018 0.982 12 C -0.189 4.189 13 C -0.584 4.584 14 H 0.100 0.900 15 C -0.186 4.186 16 N -0.559 5.559 17 Si 0.798 3.202 18 H -0.196 1.196 19 H -0.217 1.217 20 H -0.182 1.182 21 C -0.178 4.178 22 H 0.102 0.898 23 H 0.142 0.858 24 H 0.129 0.871 25 H 0.247 0.753 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.031 0.969 29 H 0.074 0.926 30 H 0.179 0.821 31 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -14.897 3.319 -8.389 17.416 hybrid contribution 0.733 -1.667 0.133 1.826 sum -14.164 1.652 -8.256 16.478 Atomic orbital electron populations 1.20737 0.81259 1.05577 1.06616 1.27118 1.00040 0.90954 0.90348 1.77941 0.88162 1.24916 1.17250 1.91355 1.17644 1.26126 1.88760 1.23693 0.95290 0.83770 1.00857 0.84346 1.20721 0.84411 0.82691 0.83414 1.90688 1.55878 1.65678 1.34883 1.46113 1.37086 1.11646 1.39074 1.18432 0.83243 0.91758 0.90125 0.98160 1.21865 1.00010 0.96998 1.00064 1.21484 1.16725 0.90254 1.29895 0.90001 1.25859 0.94896 1.04232 0.93616 1.70149 1.24170 1.37518 1.24096 0.85336 0.79135 0.78349 0.77388 1.19601 1.21714 1.18217 1.23184 0.88328 0.99522 1.06779 0.89809 0.85778 0.87145 0.75263 0.93075 0.92766 0.96948 0.92570 0.82143 0.88361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.78 10.49 71.24 0.75 -0.03 16 2 C 0.11 2.23 7.45 46.89 0.35 2.58 16 3 N -0.34 -10.40 12.45 -40.62 -0.51 -10.90 16 4 O -0.23 -8.70 11.84 -20.32 -0.24 -8.94 16 5 C 0.03 0.79 4.25 30.45 0.13 0.92 16 6 H 0.14 3.24 8.14 -2.39 -0.02 3.22 16 7 C 0.50 20.91 7.10 87.66 0.62 21.54 16 8 O -0.59 -31.92 16.25 14.94 0.24 -31.68 16 9 N -0.69 -27.45 5.07 -446.09 -2.26 -29.71 16 10 C 0.27 13.69 2.43 44.24 0.11 13.80 16 11 H 0.00 0.03 7.52 -2.39 -0.02 0.01 16 12 C -0.13 -6.51 9.36 71.98 0.67 -5.83 16 13 C -0.55 -27.75 8.66 25.60 0.22 -27.53 16 14 H 0.08 3.75 7.74 -2.91 -0.02 3.73 16 15 C 0.01 0.75 5.17 84.66 0.44 1.19 16 16 N -0.92 -53.14 12.16 21.45 0.26 -52.87 16 17 Si 0.97 40.61 29.55 68.60 2.03 42.64 16 18 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 19 H -0.29 -12.31 7.11 99.48 0.71 -11.60 16 20 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16 21 C -0.14 -2.91 6.62 30.76 0.20 -2.71 16 22 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 23 H 0.12 0.39 8.14 -2.39 -0.02 0.37 16 24 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.41 12.65 8.53 -92.71 -0.79 11.86 16 26 H 0.05 2.76 6.83 -2.39 -0.02 2.75 16 27 H 0.05 2.38 8.14 -2.39 -0.02 2.36 16 28 H 0.01 0.58 8.14 -2.39 -0.02 0.57 16 29 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 30 H 0.16 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.10 2.37 7.90 -2.39 -0.02 2.35 16 Total: -1.00 -77.92 273.97 3.36 -74.55 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: 0.35 Total: 12.99 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: 3.49 Total: 3.92 kcal Atomic # 7 Polarization: -90.98 SS G_CDS: -2.51 Total: -93.49 kcal Atomic # 8 Polarization: -40.62 SS G_CDS: 0.00 Total: -40.62 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 2.03 Total: 42.64 kcal Total: -77.92 3.36 -74.55 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824689784.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.574 kcal (2) G-P(sol) polarization free energy of solvation -77.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds