Wall clock time and date at job start Sun Mar 29 2020 22:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.37105 * 119.99547 * 2 1 4 4 H 1.08002 * 119.99130 * 151.70460 * 3 2 1 5 5 C 1.38945 * 120.00540 * 331.70840 * 3 2 1 6 6 N 1.31417 * 119.99693 * 331.02556 * 5 3 2 7 7 Si 1.86797 * 120.00190 * 151.02587 * 5 3 2 8 8 H 1.48500 * 109.47091 * 179.97438 * 7 5 3 9 9 H 1.48494 * 109.47444 * 299.99771 * 7 5 3 10 10 H 1.48505 * 109.46876 * 60.00134 * 7 5 3 11 11 C 1.34770 * 120.00066 * 180.02562 * 2 1 3 12 12 O 1.21294 * 119.99604 * 180.02562 * 11 2 1 13 13 C 1.50702 * 120.00249 * 359.97438 * 11 2 1 14 14 H 1.09000 * 109.87277 * 318.99320 * 13 11 2 15 15 C 1.54323 * 109.87677 * 80.00092 * 13 11 2 16 16 C 1.55162 * 102.93810 * 141.61324 * 15 13 11 17 17 C 1.54909 * 101.58207 * 324.49440 * 16 15 13 18 18 N 1.47015 * 109.88289 * 197.81161 * 13 11 2 19 19 C 1.34781 * 125.65126 * 61.59951 * 18 13 11 20 20 O 1.21285 * 119.99564 * 359.97438 * 19 18 13 21 21 H 1.08999 * 109.46572 * 95.33697 * 1 2 3 22 22 H 1.09001 * 109.46859 * 215.33314 * 1 2 3 23 23 H 1.08998 * 109.47539 * 335.33886 * 1 2 3 24 24 H 0.96998 * 120.00244 * 353.75192 * 6 5 3 25 25 H 1.09003 * 110.72417 * 259.97023 * 15 13 11 26 26 H 1.08998 * 110.72434 * 23.25278 * 15 13 11 27 27 H 1.08996 * 111.00516 * 82.56860 * 16 15 13 28 28 H 1.09001 * 111.00248 * 206.38667 * 16 15 13 29 29 H 1.09005 * 110.36503 * 155.84588 * 17 16 15 30 30 H 1.08999 * 110.37250 * 278.06612 * 17 16 15 31 31 H 1.08001 * 120.00118 * 179.97438 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1874 0.0000 4 1 3.1337 1.2432 0.4434 5 6 1.5803 2.3189 -0.5703 6 7 0.7261 2.1957 -1.5614 7 14 2.0277 4.0150 0.0718 8 1 1.2896 5.0470 -0.6999 9 1 1.6611 4.1134 1.5074 10 1 3.4885 4.2331 -0.0822 11 6 2.1389 -1.1671 -0.0005 12 8 3.3519 -1.1670 -0.0001 13 6 1.3855 -2.4723 -0.0005 14 1 0.5305 -2.4066 0.6724 15 6 0.9044 -2.8004 -1.4297 16 6 1.1003 -4.3371 -1.5180 17 6 2.3891 -4.5348 -0.6815 18 7 2.2756 -3.5635 0.4218 19 6 2.8874 -3.6595 1.6189 20 8 2.7223 -2.7967 2.4552 21 1 -0.3632 -0.0956 -1.0232 22 1 -0.3633 -0.8384 0.5943 23 1 -0.3634 0.9339 0.4288 24 1 0.5622 1.3244 -1.9550 25 1 -0.1465 -2.5380 -1.5527 26 1 1.5197 -2.2900 -2.1705 27 1 0.2587 -4.8647 -1.0694 28 1 1.2516 -4.6529 -2.5502 29 1 2.4345 -5.5508 -0.2892 30 1 3.2705 -4.3227 -1.2866 31 1 3.5246 -4.5047 1.8335 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824862021.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:00 Heat of formation + Delta-G solvation = -53.992300 kcal Electronic energy + Delta-G solvation = -16349.160947 eV Core-core repulsion = 13631.302931 eV Total energy + Delta-G solvation = -2717.858015 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.95116 -37.87170 -36.66744 -34.74812 -31.75015 -31.19688 -29.21578 -26.33412 -24.61113 -23.71472 -21.39783 -21.00599 -18.61286 -17.43878 -16.81592 -16.72418 -15.51802 -14.70791 -14.51714 -13.93613 -13.74721 -13.68558 -13.22912 -12.93741 -12.57794 -12.03204 -11.86316 -11.72716 -11.28036 -11.22409 -10.98208 -10.78931 -10.65619 -10.15944 -9.94224 -9.53964 -8.90811 -8.75295 -7.95533 -7.75269 -6.58356 -3.83478 3.06909 3.33462 3.37967 3.41159 3.60500 3.88129 4.29430 4.58469 4.70342 4.81014 4.97381 5.09456 5.24867 5.39170 5.52380 5.56414 5.77108 5.79862 5.96678 5.98358 6.11010 6.27442 6.38362 6.51489 6.64155 7.81679 7.96997 8.18119 8.48788 8.70962 9.01114 9.47654 9.95836 10.67320 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.039142 B = 0.008787 C = 0.007816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.172384 B = 3185.910765 C = 3581.387599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.452 5.452 3 C -0.399 4.399 4 H 0.086 0.914 5 C 0.009 3.991 6 N -0.876 5.876 7 Si 1.071 2.929 8 H -0.280 1.280 9 H -0.284 1.284 10 H -0.284 1.284 11 C 0.451 3.549 12 O -0.571 6.571 13 C 0.117 3.883 14 H 0.083 0.917 15 C -0.118 4.118 16 C -0.131 4.131 17 C 0.103 3.897 18 N -0.606 5.606 19 C 0.510 3.490 20 O -0.542 6.542 21 H 0.044 0.956 22 H 0.043 0.957 23 H 0.071 0.929 24 H 0.273 0.727 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.063 -12.869 -0.957 13.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.173 5.173 3 C -0.526 4.526 4 H 0.104 0.896 5 C -0.198 4.198 6 N -0.510 5.510 7 Si 0.897 3.103 8 H -0.205 1.205 9 H -0.211 1.211 10 H -0.210 1.210 11 C 0.238 3.762 12 O -0.453 6.453 13 C 0.010 3.990 14 H 0.101 0.899 15 C -0.156 4.156 16 C -0.169 4.169 17 C -0.020 4.020 18 N -0.343 5.343 19 C 0.280 3.720 20 O -0.416 6.416 21 H 0.062 0.938 22 H 0.062 0.938 23 H 0.090 0.910 24 H 0.084 0.916 25 H 0.103 0.897 26 H 0.099 0.901 27 H 0.094 0.906 28 H 0.102 0.898 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -2.844 -10.775 -0.546 11.158 hybrid contribution 0.286 -1.688 0.017 1.712 sum -2.558 -12.463 -0.529 12.734 Atomic orbital electron populations 1.21701 0.82844 1.01513 0.99941 1.43545 1.04345 1.05222 1.64168 1.20310 1.05292 0.86241 1.40757 0.89626 1.26345 0.96153 1.03719 0.93591 1.70779 1.35003 1.27741 1.17491 0.83480 0.76443 0.74222 0.76122 1.20541 1.21061 1.20966 1.20176 0.88289 0.84540 0.83226 1.90498 1.13869 1.86628 1.54347 1.21530 0.92833 0.88080 0.96571 0.89909 1.22554 1.02268 0.95761 0.95059 1.22769 0.97380 0.96222 1.00505 1.22271 0.98663 0.92415 0.88696 1.48760 1.48089 1.22837 1.14631 1.22105 0.80444 0.89742 0.79725 1.90732 1.61668 1.42863 1.46333 0.93756 0.93840 0.91021 0.91631 0.89692 0.90073 0.90555 0.89757 0.90578 0.91225 0.85726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.87 8.26 59.85 0.49 2.36 16 2 N -0.45 -12.11 2.83 -122.19 -0.35 -12.46 16 3 C -0.40 -11.83 8.97 -14.93 -0.13 -11.96 16 4 H 0.09 2.76 7.64 -52.49 -0.40 2.36 16 5 C 0.01 0.25 4.62 -17.47 -0.08 0.17 16 6 N -0.88 -24.72 12.82 55.50 0.71 -24.01 16 7 Si 1.07 24.78 30.01 -169.99 -5.10 19.68 16 8 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 9 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 C 0.45 11.64 6.08 -10.99 -0.07 11.57 16 12 O -0.57 -17.05 15.84 5.54 0.09 -16.97 16 13 C 0.12 2.26 2.50 -68.11 -0.17 2.09 16 14 H 0.08 1.56 6.43 -51.93 -0.33 1.23 16 15 C -0.12 -1.76 6.20 -24.89 -0.15 -1.92 16 16 C -0.13 -1.39 7.09 -24.58 -0.17 -1.57 16 17 C 0.10 1.23 7.21 -2.53 -0.02 1.21 16 18 N -0.61 -10.37 2.76 -169.37 -0.47 -10.83 16 19 C 0.51 9.18 11.63 54.06 0.63 9.81 16 20 O -0.54 -12.84 16.96 5.55 0.09 -12.75 16 21 H 0.04 0.93 7.05 -51.93 -0.37 0.56 16 22 H 0.04 0.82 6.20 -51.93 -0.32 0.50 16 23 H 0.07 1.67 7.39 -51.93 -0.38 1.28 16 24 H 0.27 7.64 6.65 -40.82 -0.27 7.37 16 25 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.08 1.38 7.84 -51.93 -0.41 0.97 16 27 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.13 1.56 8.06 -52.49 -0.42 1.13 16 LS Contribution 263.07 15.07 3.96 3.96 Total: -1.00 -37.63 263.07 -4.55 -42.18 By element: Atomic # 1 Polarization: 3.23 SS G_CDS: -3.82 Total: -0.58 kcal Atomic # 6 Polarization: 11.44 SS G_CDS: 0.32 Total: 11.77 kcal Atomic # 7 Polarization: -47.19 SS G_CDS: -0.10 Total: -47.29 kcal Atomic # 8 Polarization: -29.89 SS G_CDS: 0.18 Total: -29.71 kcal Atomic # 14 Polarization: 24.78 SS G_CDS: -5.10 Total: 19.68 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -37.63 -4.55 -42.18 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824862021.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.816 kcal (2) G-P(sol) polarization free energy of solvation -37.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds