Wall clock time and date at job start Sun Mar 29 2020 22:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.46906 * 2 1 4 4 C 1.37105 * 119.99662 * 95.76885 * 3 2 1 5 5 H 1.07996 * 119.99973 * 218.86263 * 4 3 2 6 6 C 1.38957 * 120.00010 * 38.58447 * 4 3 2 7 7 N 1.31411 * 119.99890 * 24.94408 * 6 4 3 8 8 Si 1.86798 * 120.00136 * 204.93648 * 6 4 3 9 9 H 1.48501 * 109.46888 * 60.00393 * 8 6 4 10 10 H 1.48499 * 109.47297 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47074 * 300.00669 * 8 6 4 12 12 C 1.34773 * 120.00691 * 275.76686 * 3 2 1 13 13 O 1.21290 * 120.00516 * 180.02562 * 12 3 2 14 14 C 1.50709 * 119.99586 * 0.02562 * 12 3 2 15 15 H 1.08999 * 115.54399 * 356.75705 * 14 12 3 16 16 C 1.52991 * 117.49776 * 211.09033 * 14 12 3 17 17 C 1.52992 * 117.49876 * 142.43201 * 14 12 3 18 18 H 1.09005 * 117.49770 * 214.98274 * 17 14 12 19 19 C 1.50701 * 117.50028 * 359.97245 * 17 14 12 20 20 N 1.34782 * 120.00420 * 267.48486 * 19 17 14 21 21 O 1.21284 * 119.99846 * 87.47983 * 19 17 14 22 22 H 1.08992 * 109.47477 * 299.99955 * 1 2 3 23 23 H 1.09002 * 109.47082 * 60.00315 * 1 2 3 24 24 H 1.09001 * 109.47321 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47231 * 240.00600 * 2 1 3 26 26 H 1.08997 * 109.46866 * 120.00384 * 2 1 3 27 27 H 0.96998 * 120.00045 * 179.97438 * 7 6 4 28 28 H 1.09006 * 117.50330 * 359.97438 * 16 14 12 29 29 H 1.09006 * 117.50148 * 145.02287 * 16 14 12 30 30 H 0.97004 * 119.99199 * 359.97438 * 20 19 17 31 31 H 0.96990 * 120.00243 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3592 1.9877 1.1814 5 1 2.1188 3.0280 1.3434 6 6 3.0091 1.2623 2.1725 7 7 3.7228 0.2062 1.8528 8 14 2.8684 1.7884 3.9594 9 1 1.4421 1.7620 4.3722 10 1 3.6485 0.8566 4.8127 11 1 3.4028 3.1653 4.1135 12 6 2.1323 2.0558 -1.1612 13 8 2.5370 3.1992 -1.1612 14 6 1.7570 1.3893 -2.4597 15 1 1.4550 0.3449 -2.3819 16 6 2.5190 1.8125 -3.7170 17 6 1.0648 2.2478 -3.5202 18 1 0.3075 1.7681 -4.1403 19 6 0.8099 3.6950 -3.1861 20 7 -0.3643 4.0631 -2.6362 21 8 1.6615 4.5286 -3.4119 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5137 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 4.1768 -0.2999 2.5446 28 1 3.2915 2.5734 -3.6052 29 1 2.7179 1.0467 -4.4668 30 1 -1.0454 3.3964 -2.4558 31 1 -0.5282 4.9945 -2.4208 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900361550.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:04 Heat of formation + Delta-G solvation = -43.307250 kcal Electronic energy + Delta-G solvation = -16201.989124 eV Core-core repulsion = 13484.594447 eV Total energy + Delta-G solvation = -2717.394677 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.71420 -38.03579 -35.56933 -34.55421 -33.07878 -32.01544 -29.44733 -25.86374 -24.17936 -22.97652 -22.03002 -19.89394 -18.45036 -17.26856 -16.62519 -16.54559 -15.57052 -14.95619 -14.57751 -14.05924 -13.74145 -13.34646 -13.10908 -12.86766 -12.35308 -11.87284 -11.71684 -11.41255 -11.04942 -10.97966 -10.52102 -10.39547 -10.27636 -10.08083 -9.93128 -9.41565 -9.18098 -8.88566 -8.33075 -7.43183 -6.34554 -3.94296 2.98946 3.21222 3.25701 3.29099 3.66555 3.91200 4.16317 4.55457 4.72053 4.99992 5.19954 5.32487 5.43988 5.46824 5.72233 5.90832 6.03276 6.05142 6.17230 6.30939 6.46341 6.58744 6.81894 7.14625 7.22857 7.59863 7.77968 8.29785 8.53591 8.82210 9.22779 9.42186 10.06898 10.71094 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.034011 B = 0.008895 C = 0.008386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.066842 B = 3147.042202 C = 3338.209495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.104 3.896 3 N -0.436 5.436 4 C -0.313 4.313 5 H 0.088 0.912 6 C 0.041 3.959 7 N -0.863 5.863 8 Si 0.913 3.087 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.272 1.272 12 C 0.478 3.522 13 O -0.560 6.560 14 C -0.155 4.155 15 H 0.120 0.880 16 C -0.122 4.122 17 C -0.176 4.176 18 H 0.124 0.876 19 C 0.559 3.441 20 N -0.856 5.856 21 O -0.526 6.526 22 H 0.057 0.943 23 H 0.043 0.957 24 H 0.050 0.950 25 H 0.050 0.950 26 H 0.098 0.902 27 H 0.268 0.732 28 H 0.112 0.888 29 H 0.103 0.897 30 H 0.396 0.604 31 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.124 -3.173 -6.392 11.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.020 4.020 3 N -0.155 5.155 4 C -0.440 4.440 5 H 0.106 0.894 6 C -0.164 4.164 7 N -0.500 5.500 8 Si 0.739 3.261 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.197 1.197 12 C 0.266 3.734 13 O -0.442 6.442 14 C -0.177 4.177 15 H 0.138 0.862 16 C -0.160 4.160 17 C -0.198 4.198 18 H 0.142 0.858 19 C 0.343 3.657 20 N -0.419 5.419 21 O -0.400 6.400 22 H 0.076 0.924 23 H 0.063 0.937 24 H 0.069 0.931 25 H 0.068 0.932 26 H 0.116 0.884 27 H 0.078 0.922 28 H 0.131 0.869 29 H 0.121 0.879 30 H 0.223 0.777 31 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -8.102 -2.351 -6.482 10.639 hybrid contribution -0.557 -0.113 1.154 1.286 sum -8.658 -2.464 -5.328 10.461 Atomic orbital electron populations 1.22233 0.98103 1.00338 1.01623 1.21434 0.91737 0.85734 1.03120 1.43368 1.55815 1.11589 1.04726 1.19296 1.36936 0.97588 0.90223 0.89419 1.25359 0.93772 0.96756 1.00534 1.70034 1.26575 1.19451 1.33919 0.86220 0.78438 0.78833 0.82577 1.19893 1.21002 1.19713 1.19427 0.82594 0.87730 0.83686 1.90631 1.49399 1.18155 1.86026 1.22641 1.04354 0.99431 0.91293 0.86187 1.22896 0.93221 1.02651 0.97213 1.22145 0.98952 0.93888 1.04858 0.85823 1.19309 0.81132 0.89219 0.76001 1.43648 1.18324 1.12778 1.67169 1.90687 1.43761 1.52945 1.52643 0.92406 0.93745 0.93119 0.93168 0.88400 0.92234 0.86919 0.87901 0.77688 0.77241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.77 10.07 37.16 0.37 -2.39 16 2 C 0.10 2.18 5.30 -4.04 -0.02 2.16 16 3 N -0.44 -10.96 2.52 -114.81 -0.29 -11.25 16 4 C -0.31 -8.73 8.84 -14.93 -0.13 -8.86 16 5 H 0.09 2.59 7.82 -52.49 -0.41 2.18 16 6 C 0.04 1.09 4.78 -17.47 -0.08 1.01 16 7 N -0.86 -23.46 11.88 55.50 0.66 -22.80 16 8 Si 0.91 20.64 29.62 -169.99 -5.03 15.60 16 9 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 10 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 12 C 0.48 11.79 7.03 -10.98 -0.08 11.72 16 13 O -0.56 -16.17 14.30 -8.83 -0.13 -16.30 16 14 C -0.16 -2.87 5.08 -91.78 -0.47 -3.34 16 15 H 0.12 1.91 5.88 -51.93 -0.31 1.60 16 16 C -0.12 -2.08 9.58 -26.70 -0.26 -2.33 16 17 C -0.18 -2.84 6.19 -91.74 -0.57 -3.40 16 18 H 0.12 1.45 8.14 -51.93 -0.42 1.02 16 19 C 0.56 10.54 5.92 -10.98 -0.06 10.47 16 20 N -0.86 -12.46 8.87 31.22 0.28 -12.18 16 21 O -0.53 -12.34 16.62 -8.82 -0.15 -12.48 16 22 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 23 H 0.04 0.68 7.55 -51.93 -0.39 0.29 16 24 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.05 0.96 6.31 -51.93 -0.33 0.63 16 26 H 0.10 2.28 5.83 -51.93 -0.30 1.97 16 27 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 28 H 0.11 2.31 7.65 -51.93 -0.40 1.91 16 29 H 0.10 1.34 8.14 -51.93 -0.42 0.91 16 30 H 0.40 4.47 8.83 -40.82 -0.36 4.11 16 31 H 0.40 5.39 8.93 -40.82 -0.36 5.03 16 LS Contribution 267.59 15.07 4.03 4.03 Total: -1.00 -35.02 267.59 -5.61 -40.63 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -3.69 Total: 9.72 kcal Atomic # 6 Polarization: 6.32 SS G_CDS: -1.29 Total: 5.03 kcal Atomic # 7 Polarization: -46.88 SS G_CDS: 0.65 Total: -46.23 kcal Atomic # 8 Polarization: -28.51 SS G_CDS: -0.27 Total: -28.78 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.03 Total: 15.60 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -35.02 -5.61 -40.63 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900361550.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.674 kcal (2) G-P(sol) polarization free energy of solvation -35.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds