Wall clock time and date at job start Sun Mar 29 2020 22:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34415 * 124.35240 * 2 1 4 4 O 1.21288 * 124.94000 * 359.57121 * 3 2 1 5 5 C 1.51279 * 110.11588 * 179.44049 * 3 2 1 6 6 C 1.54627 * 104.25643 * 344.14061 * 5 3 2 7 7 C 1.46763 * 124.34806 * 180.30448 * 2 1 3 8 8 H 1.08993 * 110.25038 * 77.92305 * 7 2 1 9 9 C 1.50701 * 110.24144 * 316.01307 * 7 2 1 10 10 O 1.21280 * 120.00231 * 341.44909 * 9 7 2 11 11 N 1.34781 * 119.99690 * 161.45945 * 9 7 2 12 12 C 1.46505 * 119.99887 * 179.97438 * 11 9 7 13 13 C 1.50702 * 109.47039 * 179.97438 * 12 11 9 14 14 H 1.07996 * 119.99904 * 359.97438 * 13 12 11 15 15 C 1.37871 * 119.99643 * 180.02562 * 13 12 11 16 16 N 1.31508 * 120.00534 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99648 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47425 * 89.99907 * 17 15 13 19 19 H 1.48498 * 109.46940 * 209.99585 * 17 15 13 20 20 H 1.48501 * 109.47341 * 329.99682 * 17 15 13 21 21 H 1.08999 * 109.46892 * 269.70280 * 1 2 3 22 22 H 1.09000 * 109.46803 * 29.69453 * 1 2 3 23 23 H 1.09000 * 109.47214 * 149.70247 * 1 2 3 24 24 H 1.09000 * 110.64175 * 225.35910 * 5 3 2 25 25 H 1.09002 * 110.27454 * 102.75187 * 5 3 2 26 26 H 1.08995 * 110.97572 * 266.46161 * 6 5 3 27 27 H 1.09010 * 111.00160 * 142.70966 * 6 5 3 28 28 H 0.96990 * 120.00025 * 359.97438 * 11 9 7 29 29 H 1.08997 * 109.46969 * 299.99820 * 12 11 9 30 30 H 1.08995 * 109.46837 * 59.99469 * 12 11 9 31 31 H 0.97005 * 120.00331 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2235 1.1097 0.0000 4 8 1.7947 2.2442 -0.0074 5 6 3.6898 0.7377 0.0139 6 6 3.7010 -0.7510 0.4317 7 6 2.2931 -1.2117 -0.0064 8 1 2.3293 -1.6386 -1.0087 9 6 1.7474 -2.2214 0.9702 10 8 0.9876 -1.8678 1.8469 11 7 2.1038 -3.5173 0.8694 12 6 1.5737 -4.4988 1.8192 13 6 2.1222 -5.8633 1.4900 14 1 2.7976 -5.9871 0.6565 15 6 1.7607 -6.9538 2.2523 16 7 0.9378 -6.8031 3.2670 17 14 2.4411 -8.6451 1.8447 18 1 3.7098 -8.8602 2.5861 19 1 1.4554 -9.6833 2.2390 20 1 2.6992 -8.7363 0.3851 21 1 -0.3633 -0.0053 1.0277 22 1 -0.3633 0.8927 -0.5091 23 1 -0.3633 -0.8873 -0.5184 24 1 4.2327 1.3419 0.7407 25 1 4.1195 0.8581 -0.9806 26 1 3.8270 -0.8528 1.5096 27 1 4.4754 -1.3011 -0.1031 28 1 2.7113 -3.8000 0.1681 29 1 1.8701 -4.2221 2.8309 30 1 0.4860 -4.5187 1.7518 31 1 0.6839 -7.5703 3.8036 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116849600.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:30 Heat of formation + Delta-G solvation = -74.221042 kcal Electronic energy + Delta-G solvation = -15531.233271 eV Core-core repulsion = 12812.498072 eV Total energy + Delta-G solvation = -2718.735200 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.68230 -38.54973 -36.06006 -34.34302 -32.83871 -32.31857 -28.85076 -26.74676 -26.54358 -23.16774 -22.06148 -20.12458 -19.32830 -17.64852 -16.82570 -16.25575 -15.67181 -15.21911 -14.80729 -14.55263 -14.04224 -13.85255 -13.38906 -13.15960 -12.69938 -12.39391 -12.24453 -12.06579 -11.88851 -11.56658 -11.19757 -11.04945 -10.94156 -10.39157 -9.83908 -9.49819 -9.44832 -8.82645 -8.50518 -8.02767 -6.23953 -4.31739 2.58325 2.93047 3.15216 3.19457 3.26049 3.28009 3.86715 4.26527 4.28976 4.43694 4.81079 4.91201 5.12529 5.24331 5.35980 5.39707 5.56408 5.69147 5.71109 5.87420 6.05956 6.45416 7.09846 7.19943 7.27690 7.40609 7.56203 7.87716 8.17495 8.46548 8.66588 8.92257 9.35182 10.86124 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.058335 B = 0.005560 C = 0.005281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.874246 B = 5034.640002 C = 5301.243893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.597 5.597 3 C 0.517 3.483 4 O -0.539 6.539 5 C -0.152 4.152 6 C -0.120 4.120 7 C 0.109 3.891 8 H 0.100 0.900 9 C 0.491 3.509 10 O -0.541 6.541 11 N -0.705 5.705 12 C 0.250 3.750 13 C -0.546 4.546 14 H 0.064 0.936 15 C 0.065 3.935 16 N -0.885 5.885 17 Si 0.904 3.096 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.272 1.272 21 H 0.069 0.931 22 H 0.070 0.930 23 H 0.068 0.932 24 H 0.104 0.896 25 H 0.105 0.895 26 H 0.089 0.911 27 H 0.100 0.900 28 H 0.392 0.608 29 H 0.028 0.972 30 H 0.028 0.972 31 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.739 8.617 -8.589 13.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.330 5.330 3 C 0.305 3.695 4 O -0.417 6.417 5 C -0.192 4.192 6 C -0.158 4.158 7 C 0.001 3.999 8 H 0.118 0.882 9 C 0.273 3.727 10 O -0.419 6.419 11 N -0.354 5.354 12 C 0.129 3.871 13 C -0.584 4.584 14 H 0.082 0.918 15 C -0.139 4.139 16 N -0.522 5.522 17 Si 0.731 3.269 18 H -0.204 1.204 19 H -0.210 1.210 20 H -0.197 1.197 21 H 0.087 0.913 22 H 0.089 0.911 23 H 0.087 0.913 24 H 0.122 0.878 25 H 0.124 0.876 26 H 0.108 0.892 27 H 0.118 0.882 28 H 0.225 0.775 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.743 9.325 -7.787 13.042 hybrid contribution 0.527 -1.331 -0.429 1.495 sum 5.270 7.994 -8.216 12.617 Atomic orbital electron populations 1.21554 0.77384 1.02053 1.03057 1.47841 1.06859 1.05897 1.72432 1.20832 0.89292 0.84168 0.75189 1.90705 1.78840 1.20922 1.51208 1.22343 0.94828 0.97317 1.04737 1.22584 0.94408 0.95093 1.03703 1.21759 0.91667 0.86545 0.99922 0.88205 1.20435 0.82597 0.83716 0.85927 1.90692 1.36083 1.79601 1.35564 1.46469 1.47649 1.07160 1.34120 1.19145 0.94915 0.85078 0.87914 1.21199 1.29690 0.91984 1.15511 0.91802 1.24950 0.94781 0.99537 0.94682 1.69967 1.33086 1.31375 1.17776 0.86405 0.78752 0.82968 0.78727 1.20411 1.20987 1.19713 0.91281 0.91147 0.91337 0.87752 0.87636 0.89224 0.88169 0.77526 0.95419 0.95443 0.92356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.47 9.61 59.85 0.58 2.05 16 2 N -0.60 -8.81 3.00 -174.02 -0.52 -9.34 16 3 C 0.52 7.68 8.02 -10.86 -0.09 7.59 16 4 O -0.54 -9.85 17.59 5.55 0.10 -9.75 16 5 C -0.15 -1.54 6.86 -26.74 -0.18 -1.72 16 6 C -0.12 -1.23 6.68 -25.10 -0.17 -1.40 16 7 C 0.11 1.43 3.71 -68.16 -0.25 1.18 16 8 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 9 C 0.49 8.92 6.69 -10.98 -0.07 8.85 16 10 O -0.54 -12.24 15.07 5.56 0.08 -12.15 16 11 N -0.71 -13.45 5.55 -61.47 -0.34 -13.79 16 12 C 0.25 6.26 5.43 -5.19 -0.03 6.24 16 13 C -0.55 -14.09 9.28 -34.44 -0.32 -14.41 16 14 H 0.06 1.53 7.60 -52.49 -0.40 1.13 16 15 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 16 N -0.88 -25.36 13.29 55.43 0.74 -24.62 16 17 Si 0.90 20.12 29.54 -169.99 -5.02 15.10 16 18 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 19 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 20 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 21 H 0.07 1.14 7.51 -51.93 -0.39 0.75 16 22 H 0.07 0.94 7.92 -51.93 -0.41 0.53 16 23 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 24 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.09 1.05 7.90 -51.93 -0.41 0.64 16 27 H 0.10 0.72 8.14 -51.92 -0.42 0.30 16 28 H 0.39 6.17 8.32 -40.82 -0.34 5.83 16 29 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 271.63 15.07 4.09 4.09 Total: -1.00 -33.30 271.63 -5.55 -38.85 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -4.04 Total: 1.62 kcal Atomic # 6 Polarization: 10.63 SS G_CDS: -0.63 Total: 10.00 kcal Atomic # 7 Polarization: -47.62 SS G_CDS: -0.13 Total: -47.75 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: 0.18 Total: -21.91 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -33.30 -5.55 -38.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116849600.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.367 kcal (2) G-P(sol) polarization free energy of solvation -33.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds