Wall clock time and date at job start Sun Mar 29 2020 22:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21278 * 119.99826 * 2 1 4 4 N 1.34770 * 120.00142 * 179.97438 * 2 1 3 5 5 C 1.47073 * 136.05543 * 359.63480 * 4 2 1 6 6 C 1.53754 * 87.88798 * 152.96024 * 5 4 2 7 7 N 1.46504 * 114.39481 * 272.67532 * 6 5 4 8 8 C 1.34779 * 119.99632 * 248.58966 * 7 6 5 9 9 O 1.21278 * 120.00266 * 359.97438 * 8 7 6 10 10 C 1.50701 * 119.99674 * 179.97438 * 8 7 6 11 11 C 1.50692 * 109.47200 * 179.97438 * 10 8 7 12 12 H 1.08009 * 120.00375 * 359.97438 * 11 10 8 13 13 C 1.37880 * 120.00541 * 180.02562 * 11 10 8 14 14 N 1.31520 * 119.99286 * 359.97438 * 13 11 10 15 15 Si 1.86794 * 120.00551 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.46898 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47488 * 119.99785 * 15 13 11 18 18 H 1.48501 * 109.47209 * 239.99976 * 15 13 11 19 19 C 1.47068 * 136.06023 * 179.97438 * 4 2 1 20 20 H 1.09002 * 109.47152 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.46980 * 59.99928 * 1 2 3 22 22 H 1.09004 * 109.47113 * 299.99909 * 1 2 3 23 23 H 1.08996 * 113.46538 * 267.68779 * 5 4 2 24 24 H 1.08992 * 113.47227 * 38.13099 * 5 4 2 25 25 H 1.09001 * 114.26856 * 139.78926 * 6 5 4 26 26 H 0.96999 * 120.00321 * 68.58498 * 7 6 5 27 27 H 1.08999 * 109.47137 * 299.99748 * 10 8 7 28 28 H 1.09000 * 109.47378 * 59.99479 * 10 8 7 29 29 H 0.97001 * 119.99347 * 180.02562 * 14 13 11 30 30 H 1.08999 * 113.47108 * 321.87539 * 19 4 2 31 31 H 1.09003 * 113.46230 * 92.25385 * 19 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 1.8265 -2.5945 0.0077 6 6 3.1645 -2.8718 -0.6972 7 7 3.1095 -2.7784 -2.1582 8 6 3.2491 -3.8882 -2.9102 9 8 3.4207 -4.9641 -2.3774 10 6 3.1920 -3.7922 -4.4130 11 6 3.3745 -5.1631 -5.0113 12 1 3.5181 -6.0185 -4.3677 13 6 3.3594 -5.3256 -6.3804 14 7 3.1851 -4.2839 -7.1642 15 14 3.5850 -7.0251 -7.1220 16 1 3.7608 -8.0205 -6.0340 17 1 2.3877 -7.3770 -7.9268 18 1 4.7866 -7.0289 -7.9946 19 6 3.5942 -1.5740 0.0002 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 0.5138 0.8900 23 1 1.7666 -3.0218 1.0086 24 1 0.9553 -2.8286 -0.6040 25 1 3.6820 -3.7629 -0.3417 26 1 2.9726 -1.9179 -2.5844 27 1 2.2251 -3.3895 -4.7149 28 1 3.9858 -3.1336 -4.7655 29 1 3.1741 -4.3983 -8.1274 30 1 4.2287 -0.9386 -0.6177 31 1 4.0008 -1.7311 0.9993 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143205343.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:54 Heat of formation + Delta-G solvation = -39.939207 kcal Electronic energy + Delta-G solvation = -15229.938352 eV Core-core repulsion = 12512.689725 eV Total energy + Delta-G solvation = -2717.248628 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.65509 -38.65881 -37.52157 -33.13951 -32.96530 -30.87244 -29.09886 -27.76672 -26.06978 -23.86716 -21.57152 -19.98187 -18.93362 -17.13895 -16.59682 -16.15708 -15.91429 -15.71319 -15.12987 -14.40425 -14.30563 -13.77808 -13.15747 -12.87127 -12.80807 -12.66461 -12.21178 -12.12781 -11.95135 -11.31654 -11.00176 -10.78008 -10.66571 -10.00363 -9.92190 -9.29765 -9.00018 -8.72474 -8.64363 -8.46099 -6.09045 -4.09091 2.51068 2.73608 3.31537 3.38775 3.45858 3.50177 3.63573 4.28643 4.45825 4.52323 4.84406 5.02737 5.17327 5.22578 5.28101 5.29467 5.40286 5.51349 5.56174 5.68225 5.76518 6.29194 6.90033 7.13580 7.27115 7.59091 7.91207 7.97257 8.03432 8.34339 9.01909 9.09978 9.56304 11.03326 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.048094 B = 0.005287 C = 0.005053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.048194 B = 5294.795518 C = 5539.838890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.539 3.461 3 O -0.552 6.552 4 N -0.646 5.646 5 C 0.080 3.920 6 C 0.113 3.887 7 N -0.728 5.728 8 C 0.519 3.481 9 O -0.541 6.541 10 C 0.005 3.995 11 C -0.509 4.509 12 H 0.076 0.924 13 C 0.054 3.946 14 N -0.900 5.900 15 Si 0.901 3.099 16 H -0.270 1.270 17 H -0.284 1.284 18 H -0.284 1.284 19 C 0.090 3.910 20 H 0.075 0.925 21 H 0.095 0.905 22 H 0.093 0.907 23 H 0.094 0.906 24 H 0.084 0.916 25 H 0.123 0.877 26 H 0.399 0.601 27 H 0.048 0.952 28 H 0.049 0.951 29 H 0.261 0.739 30 H 0.083 0.917 31 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.183 5.547 13.737 15.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.330 3.670 3 O -0.430 6.430 4 N -0.383 5.383 5 C -0.044 4.044 6 C 0.005 3.995 7 N -0.381 5.381 8 C 0.310 3.690 9 O -0.417 6.417 10 C -0.034 4.034 11 C -0.547 4.547 12 H 0.094 0.906 13 C -0.147 4.147 14 N -0.540 5.540 15 Si 0.729 3.271 16 H -0.195 1.195 17 H -0.210 1.210 18 H -0.210 1.210 19 C -0.033 4.033 20 H 0.094 0.906 21 H 0.114 0.886 22 H 0.112 0.888 23 H 0.112 0.888 24 H 0.103 0.897 25 H 0.141 0.859 26 H 0.234 0.766 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.101 0.899 31 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.876 5.556 13.905 15.468 hybrid contribution -0.082 -0.312 -0.597 0.679 sum -3.958 5.243 13.308 14.841 Atomic orbital electron populations 1.21796 0.91263 1.04342 1.05124 1.20408 0.90124 0.81367 0.75095 1.90724 1.70810 1.30457 1.51033 1.49833 1.09487 1.05780 1.73186 1.23755 1.00594 0.78882 1.01195 1.22051 0.95724 0.98598 0.83112 1.46014 1.76441 1.11646 1.03993 1.22113 0.72827 0.82321 0.91733 1.90539 1.48086 1.28194 1.74862 1.19257 0.99611 1.00461 0.84115 1.21192 1.48984 0.93061 0.91480 0.90566 1.25021 0.95192 0.97310 0.97129 1.69974 1.50440 1.29474 1.04097 0.86368 0.77612 0.84086 0.79021 1.19451 1.21009 1.21002 1.23430 0.84550 0.94233 1.01099 0.90563 0.88611 0.88835 0.88792 0.89733 0.85909 0.76649 0.93378 0.93320 0.92910 0.89862 0.88701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.47 10.36 36.01 0.37 -1.10 16 2 C 0.54 7.02 8.19 -10.99 -0.09 6.93 16 3 O -0.55 -9.51 17.88 5.56 0.10 -9.41 16 4 N -0.65 -7.54 3.69 -185.07 -0.68 -8.22 16 5 C 0.08 0.81 7.83 -8.36 -0.07 0.75 16 6 C 0.11 1.41 4.61 -67.68 -0.31 1.10 16 7 N -0.73 -11.56 5.40 -53.49 -0.29 -11.85 16 8 C 0.52 11.05 7.82 -10.98 -0.09 10.97 16 9 O -0.54 -13.10 15.05 5.56 0.08 -13.01 16 10 C 0.00 0.12 5.46 -29.04 -0.16 -0.04 16 11 C -0.51 -14.40 8.92 -34.44 -0.31 -14.71 16 12 H 0.08 2.24 6.75 -52.48 -0.35 1.89 16 13 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 14 N -0.90 -26.12 13.29 55.43 0.74 -25.38 16 15 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 16 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 C 0.09 0.99 8.37 -8.51 -0.07 0.92 16 20 H 0.08 0.57 7.31 -51.93 -0.38 0.19 16 21 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 22 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.08 0.88 7.94 -51.93 -0.41 0.47 16 25 H 0.12 1.59 7.45 -51.93 -0.39 1.20 16 26 H 0.40 5.89 8.76 -40.82 -0.36 5.53 16 27 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 30 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 276.70 15.07 4.17 4.17 Total: -1.00 -34.19 276.70 -5.70 -39.89 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -3.98 Total: 0.84 kcal Atomic # 6 Polarization: 7.07 SS G_CDS: -0.82 Total: 6.26 kcal Atomic # 7 Polarization: -45.22 SS G_CDS: -0.23 Total: -45.45 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: 0.18 Total: -22.43 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -34.19 -5.70 -39.89 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143205343.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.050 kcal (2) G-P(sol) polarization free energy of solvation -34.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds