Wall clock time and date at job start Sun Mar 29 2020 22:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21278 * 119.99826 * 2 1 4 4 N 1.34770 * 120.00142 * 179.97438 * 2 1 3 5 5 C 1.47073 * 136.05543 * 359.63480 * 4 2 1 6 6 C 1.53754 * 87.88798 * 152.96024 * 5 4 2 7 7 N 1.46504 * 114.39481 * 272.67532 * 6 5 4 8 8 C 1.34779 * 119.99632 * 248.58966 * 7 6 5 9 9 O 1.21278 * 120.00266 * 359.97438 * 8 7 6 10 10 C 1.50701 * 119.99674 * 179.97438 * 8 7 6 11 11 C 1.50692 * 109.47200 * 179.97438 * 10 8 7 12 12 H 1.08009 * 120.00375 * 359.97438 * 11 10 8 13 13 C 1.37880 * 120.00541 * 180.02562 * 11 10 8 14 14 N 1.31520 * 119.99286 * 359.97438 * 13 11 10 15 15 Si 1.86794 * 120.00551 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.46898 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47488 * 119.99785 * 15 13 11 18 18 H 1.48501 * 109.47209 * 239.99976 * 15 13 11 19 19 C 1.47068 * 136.06023 * 179.97438 * 4 2 1 20 20 H 1.09002 * 109.47152 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.46980 * 59.99928 * 1 2 3 22 22 H 1.09004 * 109.47113 * 299.99909 * 1 2 3 23 23 H 1.08996 * 113.46538 * 267.68779 * 5 4 2 24 24 H 1.08992 * 113.47227 * 38.13099 * 5 4 2 25 25 H 1.09001 * 114.26856 * 139.78926 * 6 5 4 26 26 H 0.96999 * 120.00321 * 68.58498 * 7 6 5 27 27 H 1.08999 * 109.47137 * 299.99748 * 10 8 7 28 28 H 1.09000 * 109.47378 * 59.99479 * 10 8 7 29 29 H 0.97001 * 119.99347 * 180.02562 * 14 13 11 30 30 H 1.08999 * 113.47108 * 321.87539 * 19 4 2 31 31 H 1.09003 * 113.46230 * 92.25385 * 19 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 1.8265 -2.5945 0.0077 6 6 3.1645 -2.8718 -0.6972 7 7 3.1095 -2.7784 -2.1582 8 6 3.2491 -3.8882 -2.9102 9 8 3.4207 -4.9641 -2.3774 10 6 3.1920 -3.7922 -4.4130 11 6 3.3745 -5.1631 -5.0113 12 1 3.5181 -6.0185 -4.3677 13 6 3.3594 -5.3256 -6.3804 14 7 3.1851 -4.2839 -7.1642 15 14 3.5850 -7.0251 -7.1220 16 1 3.7608 -8.0205 -6.0340 17 1 2.3877 -7.3770 -7.9268 18 1 4.7866 -7.0289 -7.9946 19 6 3.5942 -1.5740 0.0002 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 0.5138 0.8900 23 1 1.7666 -3.0218 1.0086 24 1 0.9553 -2.8286 -0.6040 25 1 3.6820 -3.7629 -0.3417 26 1 2.9726 -1.9179 -2.5844 27 1 2.2251 -3.3895 -4.7149 28 1 3.9858 -3.1336 -4.7655 29 1 3.1741 -4.3983 -8.1274 30 1 4.2287 -0.9386 -0.6177 31 1 4.0008 -1.7311 0.9993 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143205343.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:54 Heat of formation + Delta-G solvation = -66.000597 kcal Electronic energy + Delta-G solvation = -15231.068459 eV Core-core repulsion = 12512.689725 eV Total energy + Delta-G solvation = -2718.378734 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.71209 -40.11203 -38.76974 -35.09027 -34.56256 -31.90990 -30.87635 -28.84239 -26.93793 -25.81009 -22.78574 -21.50378 -19.93671 -18.52277 -18.15985 -17.66604 -17.22252 -16.77268 -16.43834 -16.21688 -15.92241 -14.92733 -14.44574 -14.18190 -14.12111 -13.82484 -13.43940 -13.19416 -13.04011 -12.92344 -12.75518 -12.58260 -12.04982 -12.00555 -11.42052 -10.97826 -10.62479 -10.60512 -10.04364 -9.80532 -8.24499 -6.31914 1.41579 1.42731 1.54823 1.57263 1.82020 1.85121 2.24520 2.47715 3.11392 3.33780 3.59346 3.89762 4.24487 4.32570 4.34246 4.48913 4.58068 4.64128 4.67050 4.75236 4.89483 5.03915 5.09026 5.25632 5.58807 5.75730 6.04978 6.61316 6.69290 6.83978 7.06126 7.34172 7.47987 8.87926 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.048094 B = 0.005287 C = 0.005053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.048194 B = 5294.795518 C = 5539.838890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.531 3.469 3 O -0.604 6.604 4 N -0.649 5.649 5 C 0.095 3.905 6 C 0.099 3.901 7 N -0.710 5.710 8 C 0.528 3.472 9 O -0.573 6.573 10 C 0.005 3.995 11 C -0.533 4.533 12 H 0.060 0.940 13 C 0.008 3.992 14 N -0.927 5.927 15 Si 0.966 3.034 16 H -0.271 1.271 17 H -0.274 1.274 18 H -0.275 1.275 19 C 0.095 3.905 20 H 0.094 0.906 21 H 0.099 0.901 22 H 0.109 0.891 23 H 0.132 0.868 24 H 0.085 0.915 25 H 0.123 0.877 26 H 0.406 0.594 27 H 0.041 0.959 28 H 0.038 0.962 29 H 0.266 0.734 30 H 0.070 0.930 31 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.868 5.007 14.817 16.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.323 3.677 3 O -0.486 6.486 4 N -0.384 5.384 5 C -0.029 4.029 6 C -0.008 4.008 7 N -0.362 5.362 8 C 0.318 3.682 9 O -0.452 6.452 10 C -0.035 4.035 11 C -0.571 4.571 12 H 0.078 0.922 13 C -0.191 4.191 14 N -0.568 5.568 15 Si 0.790 3.210 16 H -0.196 1.196 17 H -0.199 1.199 18 H -0.201 1.201 19 C -0.028 4.028 20 H 0.113 0.887 21 H 0.117 0.883 22 H 0.127 0.873 23 H 0.149 0.851 24 H 0.104 0.896 25 H 0.141 0.859 26 H 0.241 0.759 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -4.575 5.032 15.011 16.480 hybrid contribution 0.147 -0.100 -0.900 0.917 sum -4.428 4.933 14.111 15.591 Atomic orbital electron populations 1.21828 0.88089 1.05848 1.06048 1.21154 0.91671 0.80786 0.74048 1.90699 1.72092 1.32226 1.53551 1.49942 1.09891 1.06260 1.72321 1.23813 0.98749 0.77590 1.02718 1.22297 0.98283 0.99589 0.80613 1.45671 1.74547 1.10249 1.05740 1.21318 0.73122 0.83069 0.90689 1.90519 1.50066 1.29576 1.75045 1.19094 0.98726 0.98619 0.87032 1.21417 1.49591 0.94130 0.91986 0.92216 1.25824 0.94657 1.01137 0.97461 1.70055 1.50832 1.31346 1.04530 0.85382 0.78077 0.79392 0.78113 1.19576 1.19903 1.20062 1.23510 0.84421 0.92611 1.02265 0.88725 0.88260 0.87265 0.85069 0.89609 0.85907 0.75907 0.94111 0.94356 0.92482 0.91111 0.85515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.44 10.36 71.24 0.74 -1.70 16 2 C 0.53 12.99 8.19 87.66 0.72 13.71 16 3 O -0.60 -20.58 17.88 -3.02 -0.05 -20.63 16 4 N -0.65 -13.63 3.69 -857.82 -3.16 -16.80 16 5 C 0.09 1.61 7.83 83.27 0.65 2.26 16 6 C 0.10 2.27 4.61 45.54 0.21 2.48 16 7 N -0.71 -22.03 5.40 -441.54 -2.38 -24.42 16 8 C 0.53 22.57 7.82 87.66 0.69 23.25 16 9 O -0.57 -27.82 15.05 -3.02 -0.05 -27.87 16 10 C 0.00 0.24 5.46 29.10 0.16 0.40 16 11 C -0.53 -30.65 8.92 25.60 0.23 -30.42 16 12 H 0.06 3.58 6.75 -2.91 -0.02 3.56 16 13 C 0.01 0.43 5.46 84.65 0.46 0.89 16 14 N -0.93 -54.03 13.29 21.45 0.28 -53.75 16 15 Si 0.97 44.55 29.54 68.60 2.03 46.58 16 16 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 17 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 18 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 19 C 0.10 1.88 8.37 83.18 0.70 2.57 16 20 H 0.09 1.09 7.31 -2.39 -0.02 1.07 16 21 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 22 H 0.11 1.35 8.14 -2.38 -0.02 1.33 16 23 H 0.13 1.39 8.14 -2.39 -0.02 1.37 16 24 H 0.09 1.51 7.94 -2.39 -0.02 1.50 16 25 H 0.12 2.95 7.45 -2.39 -0.02 2.93 16 26 H 0.41 11.74 8.76 -92.71 -0.81 10.93 16 27 H 0.04 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 30 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.13 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -74.39 276.70 1.54 -72.84 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: 0.33 Total: 10.59 kcal Atomic # 6 Polarization: 8.90 SS G_CDS: 4.55 Total: 13.45 kcal Atomic # 7 Polarization: -89.70 SS G_CDS: -5.26 Total: -94.96 kcal Atomic # 8 Polarization: -48.40 SS G_CDS: -0.10 Total: -48.50 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -74.39 1.54 -72.84 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143205343.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.842 kcal (2) G-P(sol) polarization free energy of solvation -74.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds