Wall clock time and date at job start Sun Mar 29 2020 22:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36124 * 120.17210 * 2 1 4 4 C 1.39329 * 120.98736 * 179.97438 * 3 2 1 5 5 C 1.36128 * 120.99368 * 0.02562 * 4 3 2 6 6 C 1.50696 * 120.17572 * 179.97438 * 5 4 3 7 7 C 1.50701 * 109.47071 * 264.99952 * 6 5 4 8 8 H 1.07994 * 119.99607 * 0.02562 * 7 6 5 9 9 C 1.37876 * 119.99826 * 179.97438 * 7 6 5 10 10 N 1.31514 * 120.00501 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99966 * 179.97438 * 9 7 6 12 12 H 1.48495 * 109.47144 * 89.99874 * 11 9 7 13 13 H 1.48490 * 109.47402 * 210.00293 * 11 9 7 14 14 H 1.48499 * 109.47065 * 330.00164 * 11 9 7 15 15 C 1.40504 * 119.64980 * 359.97438 * 5 4 3 16 16 C 1.40550 * 121.28889 * 179.97438 * 15 5 4 17 17 C 1.36084 * 119.65263 * 180.02562 * 16 15 5 18 18 C 1.39387 * 120.99356 * 0.02562 * 17 16 15 19 19 C 1.36085 * 120.99233 * 359.96564 * 18 17 16 20 20 C 1.40501 * 120.17362 * 179.71724 * 2 1 3 21 21 H 1.09002 * 109.47152 * 90.00200 * 1 2 3 22 22 H 1.09001 * 109.46980 * 330.00300 * 1 2 3 23 23 H 1.09004 * 109.47113 * 210.00281 * 1 2 3 24 24 H 1.08005 * 119.50772 * 359.97438 * 3 2 1 25 25 H 1.08008 * 119.50319 * 180.02562 * 4 3 2 26 26 H 1.09002 * 109.47130 * 25.00357 * 6 5 4 27 27 H 1.09000 * 109.47127 * 144.99448 * 6 5 4 28 28 H 0.96996 * 120.00455 * 180.02562 * 10 9 7 29 29 H 1.08002 * 120.17079 * 0.04150 * 16 15 5 30 30 H 1.08000 * 119.50173 * 180.02562 * 17 16 15 31 31 H 1.07993 * 119.50029 * 179.97438 * 18 17 16 32 32 H 1.08002 * 120.17556 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1912 1.1768 0.0000 4 6 3.5843 1.1966 0.0005 5 6 4.3018 0.0398 0.0005 6 6 5.8082 0.0828 0.0005 7 6 6.3138 -0.0267 -1.4149 8 1 5.6143 -0.1178 -2.2326 9 6 7.6695 -0.0095 -1.6659 10 7 8.5213 0.1019 -0.6701 11 14 8.2963 -0.1460 -3.4203 12 1 8.4219 1.2119 -4.0080 13 1 9.6242 -0.8106 -3.4212 14 1 7.3410 -0.9477 -4.2263 15 6 3.6305 -1.1945 0.0006 16 6 4.3369 -2.4096 0.0000 17 6 3.6528 -3.5860 -0.0005 18 6 2.2591 -3.6058 -0.0010 19 6 1.5418 -2.4494 -0.0003 20 6 2.2132 -1.2146 0.0060 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3633 0.8900 0.5138 23 1 -0.3633 -0.8900 0.5139 24 1 1.6459 2.1091 -0.0004 25 1 4.1028 2.1441 0.0009 26 1 6.1448 1.0241 0.4349 27 1 6.1954 -0.7483 0.5901 28 1 9.4750 0.1144 -0.8467 29 1 5.4169 -2.4096 0.0003 30 1 4.1981 -4.5183 -0.0004 31 1 1.7407 -4.5532 -0.0018 32 1 0.4622 -2.4801 -0.0003 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250054339.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:11 Heat of formation + Delta-G solvation = 22.229168 kcal Electronic energy + Delta-G solvation = -14709.978774 eV Core-core repulsion = 12406.275232 eV Total energy + Delta-G solvation = -2303.703541 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 226.105 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.94485 -36.08972 -34.48694 -32.44024 -29.74809 -29.55295 -28.74516 -25.48718 -22.86735 -22.46793 -22.38804 -19.28159 -16.88236 -16.41639 -16.22618 -15.32700 -14.46657 -13.97522 -13.73409 -13.63147 -12.90178 -12.81710 -12.56933 -12.22933 -11.96600 -11.69099 -11.44144 -11.23902 -10.89587 -10.70141 -10.53565 -10.32528 -10.16914 -9.57666 -9.40741 -8.89832 -8.44842 -8.02229 -7.05265 -6.06612 -4.11210 1.17398 1.61290 2.68710 3.28905 3.35298 3.39843 3.60690 4.40714 4.75212 5.10782 5.23984 5.27538 5.36481 5.43117 5.54136 5.69497 5.80241 5.86674 5.95941 6.02563 6.11595 6.16795 6.45925 6.59409 6.71266 6.85113 6.90789 7.02215 7.17503 7.21835 7.43682 7.50944 7.70025 7.81315 7.88866 8.27851 8.93995 9.52857 11.02395 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.029098 B = 0.008240 C = 0.007177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.031534 B = 3397.162079 C = 3900.295310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.119 4.119 3 C -0.100 4.100 4 C -0.145 4.145 5 C -0.016 4.016 6 C 0.046 3.954 7 C -0.510 4.510 8 H 0.057 0.943 9 C 0.060 3.940 10 N -0.894 5.894 11 Si 0.894 3.106 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.273 1.273 15 C -0.052 4.052 16 C -0.070 4.070 17 C -0.147 4.147 18 C -0.117 4.117 19 C -0.127 4.127 20 C -0.043 4.043 21 H 0.062 0.938 22 H 0.060 0.940 23 H 0.062 0.938 24 H 0.112 0.888 25 H 0.118 0.882 26 H 0.031 0.969 27 H 0.032 0.968 28 H 0.262 0.738 29 H 0.140 0.860 30 H 0.115 0.885 31 H 0.112 0.888 32 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.551 -3.073 1.951 13.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.119 4.119 3 C -0.118 4.118 4 C -0.163 4.163 5 C -0.016 4.016 6 C 0.010 3.990 7 C -0.548 4.548 8 H 0.075 0.925 9 C -0.142 4.142 10 N -0.532 5.532 11 Si 0.721 3.279 12 H -0.206 1.206 13 H -0.211 1.211 14 H -0.198 1.198 15 C -0.052 4.052 16 C -0.088 4.088 17 C -0.165 4.165 18 C -0.135 4.135 19 C -0.145 4.145 20 C -0.043 4.043 21 H 0.081 0.919 22 H 0.079 0.921 23 H 0.081 0.919 24 H 0.130 0.870 25 H 0.136 0.864 26 H 0.049 0.951 27 H 0.050 0.950 28 H 0.072 0.928 29 H 0.157 0.843 30 H 0.133 0.867 31 H 0.130 0.870 32 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -12.363 -3.069 1.992 12.893 hybrid contribution 0.487 -0.011 -1.035 1.144 sum -11.876 -3.080 0.957 12.306 Atomic orbital electron populations 1.20679 0.91863 1.01998 1.01622 1.19459 0.95170 0.92544 1.04766 1.20656 0.94433 0.96863 0.99850 1.20688 0.93144 0.98549 1.03883 1.20601 0.98870 0.91067 0.91025 1.18397 0.84157 0.98562 0.97911 1.21016 0.91434 1.50590 0.91755 0.92492 1.24990 0.96856 0.95146 0.97187 1.69949 1.02309 1.50165 1.30820 0.86553 0.78212 0.78321 0.84777 1.20567 1.21113 1.19767 1.18095 0.91867 0.94153 1.01116 1.21391 1.01108 0.91246 0.95012 1.20768 0.94115 0.98080 1.03561 1.20731 0.94324 0.97663 1.00747 1.20883 0.99072 0.91873 1.02677 1.17919 0.92660 0.93099 1.00618 0.91887 0.92089 0.91941 0.87037 0.86380 0.95111 0.94951 0.92787 0.84267 0.86672 0.86965 0.86364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.31 9.54 36.01 0.34 -0.96 16 2 C -0.12 -2.00 5.89 -104.53 -0.62 -2.61 16 3 C -0.10 -1.72 9.59 -39.94 -0.38 -2.10 16 4 C -0.14 -2.90 9.57 -39.93 -0.38 -3.28 16 5 C -0.02 -0.35 5.08 -104.53 -0.53 -0.88 16 6 C 0.05 1.19 4.50 -29.04 -0.13 1.06 16 7 C -0.51 -14.15 9.09 -34.44 -0.31 -14.46 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 9 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 10 N -0.89 -26.05 13.29 55.43 0.74 -25.31 16 11 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 14 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 15 C -0.05 -1.10 5.74 -106.83 -0.61 -1.71 16 16 C -0.07 -1.40 9.28 -39.48 -0.37 -1.76 16 17 C -0.15 -2.47 9.95 -39.93 -0.40 -2.87 16 18 C -0.12 -1.77 9.95 -39.93 -0.40 -2.17 16 19 C -0.13 -2.01 9.28 -39.48 -0.37 -2.37 16 20 C -0.04 -0.79 5.74 -106.83 -0.61 -1.41 16 21 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 22 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 23 H 0.06 0.70 6.43 -51.93 -0.33 0.37 16 24 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 25 H 0.12 2.27 8.05 -52.48 -0.42 1.84 16 26 H 0.03 0.82 8.04 -51.93 -0.42 0.41 16 27 H 0.03 0.86 6.70 -51.93 -0.35 0.51 16 28 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 29 H 0.14 2.97 6.49 -52.49 -0.34 2.63 16 30 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 31 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 32 H 0.12 1.52 6.37 -52.49 -0.33 1.19 16 LS Contribution 271.32 15.07 4.09 4.09 Total: -1.00 -29.66 271.32 -8.91 -38.56 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: -3.85 Total: 0.15 kcal Atomic # 6 Polarization: -29.10 SS G_CDS: -4.86 Total: -33.97 kcal Atomic # 7 Polarization: -26.05 SS G_CDS: 0.74 Total: -25.31 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -29.66 -8.91 -38.56 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250054339.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.792 kcal (2) G-P(sol) polarization free energy of solvation -29.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds