Wall clock time and date at job start Sun Mar 29 2020 21:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47489 * 2 1 4 4 H 1.08999 * 109.46821 * 305.64076 * 3 2 1 5 5 C 1.50697 * 109.47387 * 185.64282 * 3 2 1 6 6 H 1.08003 * 119.99850 * 240.00210 * 5 3 2 7 7 C 1.37879 * 120.00064 * 59.72192 * 5 3 2 8 8 N 1.31512 * 120.00138 * 0.27512 * 7 5 3 9 9 Si 1.86800 * 119.99696 * 180.27826 * 7 5 3 10 10 H 1.48498 * 109.47510 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.46964 * 120.00113 * 9 7 5 12 12 H 1.48498 * 109.47058 * 239.99870 * 9 7 5 13 13 N 1.46902 * 109.47007 * 65.63898 * 3 2 1 14 14 C 1.46900 * 110.99824 * 205.22090 * 13 3 2 15 15 C 1.50694 * 109.46971 * 185.20052 * 14 13 3 16 16 C 1.35273 * 126.71328 * 89.99848 * 15 14 13 17 17 C 1.41929 * 103.96476 * 179.97438 * 16 15 14 18 18 O 1.35711 * 126.88131 * 179.97438 * 17 16 15 19 19 N 1.30621 * 106.23915 * 359.97438 * 17 16 15 20 20 O 1.20916 * 111.49932 * 359.72412 * 19 17 16 21 21 H 1.09006 * 109.47007 * 294.41777 * 1 2 3 22 22 H 1.08997 * 109.46995 * 54.41053 * 1 2 3 23 23 H 1.08996 * 109.47230 * 174.41488 * 1 2 3 24 24 H 1.08997 * 109.47469 * 239.99505 * 2 1 3 25 25 H 1.09000 * 109.46985 * 119.99840 * 2 1 3 26 26 H 0.96991 * 119.99962 * 180.02562 * 8 7 5 27 27 H 1.00901 * 111.00169 * 329.17186 * 13 3 2 28 28 H 1.09008 * 109.46878 * 305.19626 * 14 13 3 29 29 H 1.08998 * 109.47306 * 65.19538 * 14 13 3 30 30 H 1.08001 * 128.01768 * 359.97438 * 16 15 14 31 31 H 0.96703 * 113.99405 * 90.00283 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5966 1.9846 -0.8352 5 6 3.5405 1.4448 -0.1397 6 1 4.1540 1.8864 0.6317 7 6 4.1305 0.8779 -1.2495 8 7 3.3835 0.3400 -2.1888 9 14 5.9908 0.8738 -1.4189 10 1 6.5970 1.5362 -0.2361 11 1 6.4768 -0.5266 -1.5058 12 1 6.3773 1.6093 -2.6497 13 7 1.6647 2.0946 1.2617 14 6 1.5791 3.5517 1.0960 15 6 1.3186 4.1949 2.4337 16 6 2.2469 4.6219 3.3201 17 6 1.4801 5.1396 4.3964 18 8 1.9536 5.6909 5.5426 19 7 0.2275 4.9792 4.0628 20 8 0.1213 4.4620 2.9750 21 1 -0.3633 0.4248 0.9358 22 1 -0.3633 0.5981 -0.8357 23 1 -0.3633 -1.0227 -0.1000 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 3.7985 -0.0591 -2.9693 27 1 0.7986 1.7198 1.6188 28 1 2.5182 3.9269 0.6892 29 1 0.7650 3.7925 0.4124 30 1 3.3223 4.5788 3.2298 31 1 2.0907 6.6468 5.4917 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255156273.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:24 Heat of formation + Delta-G solvation = 19.716755 kcal Electronic energy + Delta-G solvation = -15444.637970 eV Core-core repulsion = 12729.976219 eV Total energy + Delta-G solvation = -2714.661751 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -44.74528 -37.86453 -36.64155 -33.57257 -32.40459 -31.72740 -30.31289 -26.95953 -24.84757 -23.27995 -22.64036 -21.30577 -19.69275 -18.16077 -17.36267 -16.74094 -16.36446 -15.21562 -14.81870 -14.81386 -13.96296 -13.68396 -13.29803 -12.80111 -12.56239 -12.38055 -11.97385 -11.57396 -11.21017 -10.90360 -10.65381 -10.50878 -10.04197 -9.92475 -9.89781 -9.71979 -9.30728 -9.07919 -8.42073 -7.44271 -6.04158 -4.09127 1.55770 2.20483 3.22488 3.27540 3.36198 3.40506 3.54099 4.39203 4.68248 5.17518 5.23335 5.32393 5.37998 5.62248 6.00477 6.02097 6.12736 6.13163 6.23391 6.37844 6.80022 6.98284 7.06928 7.25898 7.35011 7.69307 7.82136 8.10058 8.28093 8.33831 8.58368 8.98619 9.56484 11.01221 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.029698 B = 0.006896 C = 0.005828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.598596 B = 4059.358089 C = 4803.288025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C 0.219 3.781 4 H 0.007 0.993 5 C -0.498 4.498 6 H 0.063 0.937 7 C 0.057 3.943 8 N -0.894 5.894 9 Si 0.895 3.105 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.286 1.286 13 N -0.681 5.681 14 C 0.142 3.858 15 C 0.005 3.995 16 C -0.235 4.235 17 C 0.194 3.806 18 O -0.453 6.453 19 N -0.384 5.384 20 O 0.106 5.894 21 H 0.036 0.964 22 H 0.044 0.956 23 H 0.038 0.962 24 H 0.102 0.898 25 H 0.042 0.958 26 H 0.260 0.740 27 H 0.324 0.676 28 H 0.112 0.888 29 H 0.045 0.955 30 H 0.177 0.823 31 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.229 7.638 6.273 10.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C 0.113 3.887 4 H 0.025 0.975 5 C -0.537 4.537 6 H 0.082 0.918 7 C -0.144 4.144 8 N -0.534 5.534 9 Si 0.723 3.277 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.212 1.212 13 N -0.314 5.314 14 C 0.012 3.988 15 C -0.058 4.058 16 C -0.258 4.258 17 C -0.005 4.005 18 O -0.257 6.257 19 N -0.099 5.099 20 O 0.038 5.962 21 H 0.055 0.945 22 H 0.063 0.937 23 H 0.058 0.942 24 H 0.120 0.880 25 H 0.061 0.939 26 H 0.070 0.930 27 H 0.141 0.859 28 H 0.130 0.870 29 H 0.063 0.937 30 H 0.194 0.806 31 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -3.681 7.297 7.191 10.886 hybrid contribution 1.087 0.437 -0.801 1.420 sum -2.593 7.734 6.390 10.362 Atomic orbital electron populations 1.21896 0.99433 0.99948 0.99663 1.21774 0.91378 0.99973 1.03322 1.19229 0.95773 0.90217 0.83526 0.97496 1.21234 0.91042 1.36916 1.04496 0.91835 1.24957 0.98212 0.95458 0.95799 1.69870 1.34710 1.39139 1.09668 0.86482 0.85598 0.77705 0.77866 1.19753 1.21089 1.21199 1.60748 1.36725 1.00162 1.33774 1.20439 1.02419 0.90595 0.85339 1.24744 0.83615 0.98551 0.98927 1.22539 1.02395 1.07433 0.93462 1.21338 0.88043 1.01986 0.89103 1.84828 1.84103 1.27412 1.29378 1.74025 1.20434 1.16814 0.98614 1.84875 1.30900 1.58143 1.22236 0.94533 0.93733 0.94240 0.87991 0.93885 0.93002 0.85871 0.87048 0.93745 0.80581 0.74618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 9.65 37.16 0.36 -2.45 16 2 C -0.13 -2.83 5.36 -26.73 -0.14 -2.97 16 3 C 0.22 5.09 2.02 -68.86 -0.14 4.95 16 4 H 0.01 0.19 7.85 -51.93 -0.41 -0.22 16 5 C -0.50 -12.94 8.55 -34.44 -0.29 -13.23 16 6 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 7 C 0.06 1.49 5.29 -17.82 -0.09 1.40 16 8 N -0.89 -24.37 11.28 55.43 0.63 -23.74 16 9 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 10 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 13 N -0.68 -13.49 6.26 -109.22 -0.68 -14.18 16 14 C 0.14 2.41 6.01 -4.98 -0.03 2.38 16 15 C 0.01 0.08 7.04 -35.37 -0.25 -0.17 16 16 C -0.23 -3.53 11.10 -39.23 -0.44 -3.96 16 17 C 0.19 2.94 8.62 -16.65 -0.14 2.80 16 18 O -0.45 -5.71 13.65 -18.84 -0.26 -5.96 16 19 N -0.38 -6.34 12.10 30.38 0.37 -5.97 16 20 O 0.11 1.72 11.19 17.05 0.19 1.91 16 21 H 0.04 0.61 6.65 -51.93 -0.35 0.26 16 22 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 23 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 24 H 0.10 2.59 5.93 -51.93 -0.31 2.28 16 25 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 27 H 0.32 6.00 6.64 -39.29 -0.26 5.74 16 28 H 0.11 1.93 7.92 -51.92 -0.41 1.52 16 29 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.18 2.40 8.06 -52.49 -0.42 1.97 16 31 H 0.40 2.68 9.06 45.56 0.41 3.09 16 LS Contribution 269.77 15.07 4.07 4.07 Total: -1.00 -29.01 269.77 -4.86 -33.87 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -2.98 Total: 5.66 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: -1.17 Total: -11.26 kcal Atomic # 7 Polarization: -44.20 SS G_CDS: 0.31 Total: -43.89 kcal Atomic # 8 Polarization: -3.99 SS G_CDS: -0.07 Total: -4.06 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -29.01 -4.86 -33.87 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255156273.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.586 kcal (2) G-P(sol) polarization free energy of solvation -29.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds