Wall clock time and date at job start Sun Mar 29 2020 21:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86800 * 119.99663 * 2 1 4 4 H 1.48495 * 109.46926 * 180.27611 * 3 2 1 5 5 H 1.48499 * 109.47008 * 300.27153 * 3 2 1 6 6 H 1.48494 * 109.47149 * 60.27232 * 3 2 1 7 7 C 1.37872 * 120.00096 * 180.27156 * 2 1 3 8 8 H 1.07993 * 119.99987 * 179.72759 * 7 2 1 9 9 C 1.50702 * 119.99865 * 359.73078 * 7 2 1 10 10 N 1.46498 * 109.46839 * 180.02562 * 9 7 2 11 11 C 1.34784 * 120.00027 * 179.97438 * 10 9 7 12 12 O 1.21287 * 119.99657 * 0.02562 * 11 10 9 13 13 C 1.50697 * 120.00211 * 179.97438 * 11 10 9 14 14 H 1.08997 * 112.84701 * 336.12259 * 13 11 10 15 15 C 1.53784 * 113.61668 * 204.92748 * 13 11 10 16 16 C 1.53782 * 87.07829 * 270.88709 * 15 13 11 17 17 C 1.53777 * 87.08335 * 334.56785 * 16 15 13 18 18 H 1.09009 * 113.61521 * 270.88998 * 17 16 15 19 19 C 1.50692 * 113.61909 * 139.98470 * 17 16 15 20 20 N 1.34780 * 120.00543 * 179.41807 * 19 17 16 21 21 O 1.21288 * 119.99862 * 359.41908 * 19 17 16 22 22 H 0.96994 * 119.99888 * 359.72685 * 1 2 3 23 23 H 1.09010 * 109.46857 * 299.99159 * 9 7 2 24 24 H 1.08996 * 109.47654 * 59.99339 * 9 7 2 25 25 H 0.97000 * 120.00547 * 359.97438 * 10 9 7 26 26 H 1.09001 * 113.60916 * 25.43101 * 15 13 11 27 27 H 1.08990 * 113.61555 * 156.33551 * 15 13 11 28 28 H 1.09000 * 113.61657 * 89.11794 * 16 15 13 29 29 H 1.09005 * 113.61072 * 219.93467 * 16 15 13 30 30 H 0.96995 * 119.99712 * 0.02562 * 20 19 17 31 31 H 0.97001 * 119.99963 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0067 5 1 1.8854 2.3993 -1.2092 6 1 1.8954 2.3936 1.2158 7 6 2.0046 -1.1940 -0.0057 8 1 3.0845 -1.1939 -0.0101 9 6 1.2511 -2.4991 -0.0057 10 7 2.2031 -3.6126 -0.0116 11 6 1.7539 -4.8833 -0.0122 12 8 0.5615 -5.1050 -0.0083 13 6 2.7332 -6.0287 -0.0189 14 1 3.7045 -5.7527 -0.4292 15 6 2.1597 -7.3261 -0.6128 16 6 1.6825 -7.6725 0.8074 17 6 2.8186 -6.7739 1.3236 18 1 3.7608 -7.3021 1.4706 19 6 2.4290 -5.9289 2.5089 20 7 3.3313 -5.1014 3.0725 21 8 1.3033 -5.9934 2.9558 22 1 -0.4850 0.8400 0.0040 23 1 0.6282 -2.5590 0.8868 24 1 0.6207 -2.5548 -0.8931 25 1 3.1568 -3.4353 -0.0151 26 1 1.3458 -7.1607 -1.3187 27 1 2.9216 -8.0053 -0.9953 28 1 0.6869 -7.2934 1.0381 29 1 1.8050 -8.7246 1.0648 30 1 4.2314 -5.0495 2.7150 31 1 3.0802 -4.5572 3.8353 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261759229.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:22 Heat of formation + Delta-G solvation = -98.430853 kcal Electronic energy + Delta-G solvation = -15841.162973 eV Core-core repulsion = 13121.377957 eV Total energy + Delta-G solvation = -2719.785016 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.95297 -39.84116 -37.87921 -36.09181 -34.60858 -34.33780 -29.86453 -27.79689 -27.27347 -24.63248 -22.49219 -21.89775 -20.40248 -18.98519 -18.22604 -17.84710 -17.25627 -16.87077 -16.70285 -15.94447 -15.61565 -15.25844 -15.18273 -14.33376 -14.00557 -13.97801 -13.66463 -12.97966 -12.86823 -12.75357 -12.24692 -12.16929 -11.89060 -11.49150 -11.34309 -10.91679 -10.83580 -10.62049 -10.56637 -9.84052 -8.30802 -6.48560 1.41674 1.43615 1.56960 1.57966 1.72318 2.28392 2.47472 2.76326 3.04102 3.41299 3.64361 3.80495 3.87117 4.24469 4.40194 4.60825 4.76476 4.87074 5.05368 5.09791 5.15715 5.19305 5.46006 5.55521 5.68169 5.82673 5.90948 6.53328 6.63529 6.91033 7.21705 7.41064 7.52111 8.82035 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.038196 B = 0.006975 C = 0.006592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.882307 B = 4013.170638 C = 4246.662122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.001 4.001 3 Si 0.989 3.011 4 H -0.247 1.247 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.551 4.551 8 H 0.089 0.911 9 C 0.270 3.730 10 N -0.700 5.700 11 C 0.497 3.503 12 O -0.595 6.595 13 C -0.119 4.119 14 H 0.150 0.850 15 C -0.107 4.107 16 C -0.129 4.129 17 C -0.106 4.106 18 H 0.182 0.818 19 C 0.505 3.495 20 N -0.835 5.835 21 O -0.595 6.595 22 H 0.268 0.732 23 H -0.027 1.027 24 H -0.018 1.018 25 H 0.409 0.591 26 H 0.052 0.948 27 H 0.143 0.857 28 H 0.048 0.952 29 H 0.101 0.899 30 H 0.420 0.580 31 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.918 -12.488 1.102 20.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.200 4.200 3 Si 0.811 3.189 4 H -0.170 1.170 5 H -0.205 1.205 6 H -0.207 1.207 7 C -0.589 4.589 8 H 0.107 0.893 9 C 0.147 3.853 10 N -0.350 5.350 11 C 0.284 3.716 12 O -0.476 6.476 13 C -0.141 4.141 14 H 0.167 0.833 15 C -0.145 4.145 16 C -0.167 4.167 17 C -0.127 4.127 18 H 0.200 0.800 19 C 0.291 3.709 20 N -0.398 5.398 21 O -0.475 6.475 22 H 0.077 0.923 23 H -0.009 1.009 24 H 0.000 1.000 25 H 0.245 0.755 26 H 0.071 0.929 27 H 0.161 0.839 28 H 0.067 0.933 29 H 0.119 0.881 30 H 0.252 0.748 31 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 14.195 -12.677 1.245 19.072 hybrid contribution -0.052 1.570 0.333 1.606 sum 14.143 -11.107 1.578 18.052 Atomic orbital electron populations 1.70179 1.08553 1.28502 1.50105 1.26165 0.95757 1.04237 0.93841 0.85055 0.79260 0.76972 0.77569 1.17025 1.20525 1.20671 1.21637 0.94401 0.90219 1.52647 0.89262 1.18450 0.88734 0.84818 0.93279 1.46099 1.10935 1.05255 1.72663 1.21128 0.89601 0.84976 0.75849 1.90661 1.19810 1.85467 1.51642 1.22480 1.00238 0.93034 0.98300 0.83255 1.22835 1.01304 0.94205 0.96128 1.22827 0.97348 1.00271 0.96228 1.22937 1.04176 0.96774 0.88806 0.80045 1.21185 0.84379 0.80611 0.84730 1.43724 1.15885 1.44300 1.35856 1.90748 1.22972 1.68721 1.65054 0.92332 1.00859 0.99980 0.75505 0.92940 0.83892 0.93295 0.88089 0.74831 0.76976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.94 13.29 21.45 0.28 -57.65 16 2 C 0.00 -0.05 5.46 84.65 0.46 0.42 16 3 Si 0.99 42.33 29.54 68.60 2.03 44.35 16 4 H -0.25 -9.52 7.11 99.48 0.71 -8.81 16 5 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 6 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 7 C -0.55 -30.13 9.28 25.60 0.24 -29.89 16 8 H 0.09 4.30 7.60 -2.91 -0.02 4.27 16 9 C 0.27 15.37 5.43 85.63 0.46 15.83 16 10 N -0.70 -29.66 5.55 -466.77 -2.59 -32.25 16 11 C 0.50 20.40 5.93 87.65 0.52 20.92 16 12 O -0.59 -31.77 15.22 -3.05 -0.05 -31.82 16 13 C -0.12 -2.90 4.26 -11.01 -0.05 -2.95 16 14 H 0.15 2.14 8.14 -2.39 -0.02 2.12 16 15 C -0.11 -2.34 7.44 31.12 0.23 -2.11 16 16 C -0.13 -3.38 7.00 31.12 0.22 -3.16 16 17 C -0.11 -2.28 4.10 -11.02 -0.05 -2.33 16 18 H 0.18 1.68 8.14 -2.38 -0.02 1.66 16 19 C 0.51 15.59 6.40 87.65 0.56 16.15 16 20 N -0.83 -18.23 8.87 -173.53 -1.54 -19.77 16 21 O -0.60 -26.44 16.73 -3.05 -0.05 -26.49 16 22 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 23 H -0.03 -1.76 8.14 -2.38 -0.02 -1.78 16 24 H -0.02 -1.14 8.14 -2.39 -0.02 -1.16 16 25 H 0.41 13.60 8.32 -92.71 -0.77 12.83 16 26 H 0.05 1.48 7.87 -2.39 -0.02 1.46 16 27 H 0.14 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.05 1.90 6.56 -2.39 -0.02 1.88 16 29 H 0.10 1.94 8.14 -2.38 -0.02 1.92 16 30 H 0.42 5.23 8.83 -92.71 -0.82 4.41 16 31 H 0.40 9.19 8.93 -92.71 -0.83 8.36 16 Total: -1.00 -89.05 271.09 -0.56 -89.60 By element: Atomic # 1 Polarization: 22.38 SS G_CDS: -1.24 Total: 21.14 kcal Atomic # 6 Polarization: 10.29 SS G_CDS: 2.60 Total: 12.89 kcal Atomic # 7 Polarization: -105.83 SS G_CDS: -3.84 Total: -109.68 kcal Atomic # 8 Polarization: -58.21 SS G_CDS: -0.10 Total: -58.31 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.35 kcal Total: -89.05 -0.56 -89.60 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261759229.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.830 kcal (2) G-P(sol) polarization free energy of solvation -89.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds