Wall clock time and date at job start Sun Mar 29 2020 21:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86797 * 120.00084 * 2 1 4 4 H 1.48503 * 109.47087 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47063 * 300.00003 * 3 2 1 6 6 H 1.48505 * 109.46940 * 59.99701 * 3 2 1 7 7 C 1.38958 * 119.99776 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99569 * 180.02562 * 7 2 1 9 9 N 1.37095 * 120.00032 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99613 * 179.97438 * 9 7 2 11 11 O 1.21294 * 120.00286 * 0.02562 * 10 9 7 12 12 C 1.50697 * 119.99487 * 180.02562 * 10 9 7 13 13 C 1.53001 * 109.46931 * 180.02562 * 12 10 9 14 14 N 1.46498 * 109.47601 * 179.97438 * 13 12 10 15 15 C 1.46768 * 124.34879 * 89.99607 * 14 13 12 16 16 C 1.54480 * 105.55098 * 197.08340 * 15 14 13 17 17 C 1.54631 * 101.76472 * 334.54015 * 16 15 14 18 18 C 1.34621 * 124.47196 * 270.02849 * 14 13 12 19 19 O 1.21286 * 124.90539 * 359.55259 * 18 14 13 20 20 H 0.97000 * 119.99716 * 0.02562 * 1 2 3 21 21 H 0.96996 * 120.00201 * 0.02562 * 9 7 2 22 22 H 1.08994 * 109.47407 * 60.00659 * 12 10 9 23 23 H 1.08998 * 109.47731 * 300.00045 * 12 10 9 24 24 H 1.09002 * 109.47341 * 60.00111 * 13 12 10 25 25 H 1.08998 * 109.47560 * 299.99991 * 13 12 10 26 26 H 1.09002 * 110.24468 * 78.03845 * 15 14 13 27 27 H 1.09002 * 110.24463 * 316.12602 * 15 14 13 28 28 H 1.08995 * 110.97082 * 92.66028 * 16 15 14 29 29 H 1.09001 * 110.96924 * 216.42557 * 16 15 14 30 30 H 1.09000 * 110.48694 * 143.47575 * 17 16 15 31 31 H 1.08994 * 110.49106 * 266.12244 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8893 2.3964 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0005 11 8 3.2102 -3.5579 0.0010 12 6 1.2437 -4.8629 0.0000 13 6 2.2379 -6.0259 0.0007 14 7 1.5055 -7.2946 0.0008 15 6 1.0920 -8.0121 -1.2109 16 6 0.0091 -9.0130 -0.7504 17 6 0.3811 -9.2178 0.7365 18 6 1.1236 -7.9539 1.1106 19 8 1.3429 -7.5872 2.2457 20 1 -0.4850 0.8401 -0.0004 21 1 0.3534 -2.3907 -0.0002 22 1 0.6175 -4.9205 -0.8903 23 1 0.6167 -4.9209 0.8896 24 1 2.8639 -5.9682 0.8912 25 1 2.8653 -5.9682 -0.8887 26 1 1.9397 -8.5452 -1.6415 27 1 0.6763 -7.3151 -1.9386 28 1 -0.9872 -8.5818 -0.8474 29 1 0.0829 -9.9494 -1.3034 30 1 -0.5180 -9.3258 1.3433 31 1 1.0271 -10.0880 0.8519 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318209430.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:23 Heat of formation + Delta-G solvation = -106.168508 kcal Electronic energy + Delta-G solvation = -15252.061138 eV Core-core repulsion = 12531.940592 eV Total energy + Delta-G solvation = -2720.120546 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.34891 -40.12942 -37.47652 -36.13153 -34.61511 -33.32590 -30.90002 -28.41520 -27.26028 -24.88077 -22.67142 -21.13947 -20.32344 -19.91819 -18.21361 -17.48444 -17.06187 -16.69059 -16.43706 -15.93266 -15.78848 -14.82777 -14.71712 -14.38673 -13.99707 -13.96500 -13.60452 -13.24784 -13.04207 -12.94490 -12.44794 -12.31578 -12.12426 -12.10252 -11.78295 -11.57135 -10.85264 -10.50684 -10.07961 -9.72532 -8.51235 -6.01120 1.34477 1.40348 1.53786 1.56210 1.96154 1.99416 2.29587 3.15434 3.24823 3.47100 3.69210 3.96165 4.04184 4.12466 4.26523 4.32895 4.56606 4.70967 4.74631 4.79691 4.93266 4.93885 5.14498 5.28368 5.37286 5.56644 5.93845 6.20114 6.51418 7.05565 7.14624 7.47628 8.01738 8.66407 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.057121 B = 0.005070 C = 0.005021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.073543 B = 5521.751428 C = 5575.679435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.012 4.012 3 Si 0.997 3.003 4 H -0.272 1.272 5 H -0.267 1.267 6 H -0.271 1.271 7 C -0.339 4.339 8 H 0.081 0.919 9 N -0.569 5.569 10 C 0.439 3.561 11 O -0.635 6.635 12 C -0.127 4.127 13 C 0.154 3.846 14 N -0.620 5.620 15 C 0.088 3.912 16 C -0.117 4.117 17 C -0.144 4.144 18 C 0.493 3.507 19 O -0.594 6.594 20 H 0.279 0.721 21 H 0.397 0.603 22 H 0.110 0.890 23 H 0.077 0.923 24 H 0.053 0.947 25 H 0.093 0.907 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.124 0.876 30 H 0.109 0.891 31 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.147 -17.073 -5.553 18.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.212 4.212 3 Si 0.820 3.180 4 H -0.197 1.197 5 H -0.192 1.192 6 H -0.197 1.197 7 C -0.468 4.468 8 H 0.099 0.901 9 N -0.205 5.205 10 C 0.227 3.773 11 O -0.523 6.523 12 C -0.168 4.168 13 C 0.031 3.969 14 N -0.353 5.353 15 C -0.033 4.033 16 C -0.154 4.154 17 C -0.184 4.184 18 C 0.283 3.717 19 O -0.475 6.475 20 H 0.089 0.911 21 H 0.231 0.769 22 H 0.129 0.871 23 H 0.096 0.904 24 H 0.071 0.929 25 H 0.111 0.889 26 H 0.108 0.892 27 H 0.109 0.891 28 H 0.108 0.892 29 H 0.143 0.857 30 H 0.127 0.873 31 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.344 -16.665 -5.000 17.717 hybrid contribution 0.006 1.224 0.318 1.264 sum -3.338 -15.442 -4.682 16.477 Atomic orbital electron populations 1.69684 1.06966 1.29448 1.49925 1.26115 0.96569 1.02603 0.95915 0.84823 0.78012 0.76745 0.78448 1.19696 1.19193 1.19654 1.19774 0.92837 0.83988 1.50231 0.90107 1.41985 1.09392 1.04848 1.64248 1.20700 0.88032 0.86145 0.82432 1.90488 1.15839 1.88249 1.57723 1.21686 0.99285 0.91405 1.04460 1.20770 0.92472 0.80537 1.03134 1.48625 1.56030 1.21764 1.08840 1.22492 0.99163 0.95428 0.86210 1.22658 0.98673 1.00809 0.93266 1.22370 1.01905 0.94622 0.99498 1.22131 0.78611 0.87170 0.83772 1.90700 1.59731 1.73462 1.23610 0.91133 0.76941 0.87139 0.90417 0.92878 0.88869 0.89212 0.89143 0.89193 0.85731 0.87259 0.85980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.41 13.05 21.67 0.28 -50.12 16 2 C -0.01 -0.65 5.50 84.93 0.47 -0.19 16 3 Si 1.00 43.37 29.55 68.60 2.03 45.40 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 6 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 7 C -0.34 -19.71 9.68 84.04 0.81 -18.89 16 8 H 0.08 4.99 7.16 -2.91 -0.02 4.97 16 9 N -0.57 -30.30 5.29 -306.98 -1.62 -31.92 16 10 C 0.44 21.77 7.78 87.66 0.68 22.45 16 11 O -0.63 -36.03 15.56 -3.07 -0.05 -36.08 16 12 C -0.13 -4.66 6.02 29.85 0.18 -4.48 16 13 C 0.15 5.22 5.23 86.38 0.45 5.68 16 14 N -0.62 -16.23 2.94 -817.66 -2.40 -18.63 16 15 C 0.09 1.30 7.34 86.83 0.64 1.94 16 16 C -0.12 -1.08 7.18 31.65 0.23 -0.85 16 17 C -0.14 -2.21 6.86 30.59 0.21 -2.00 16 18 C 0.49 14.24 8.03 87.87 0.71 14.94 16 19 O -0.59 -24.00 17.60 -3.05 -0.05 -24.06 16 20 H 0.28 14.20 8.31 -92.71 -0.77 13.43 16 21 H 0.40 20.13 7.90 -92.71 -0.73 19.40 16 22 H 0.11 3.34 8.14 -2.39 -0.02 3.32 16 23 H 0.08 2.92 8.14 -2.39 -0.02 2.90 16 24 H 0.05 2.17 7.89 -2.39 -0.02 2.15 16 25 H 0.09 2.98 8.10 -2.39 -0.02 2.96 16 26 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.12 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -76.66 273.43 2.96 -73.70 By element: Atomic # 1 Polarization: 22.72 SS G_CDS: 0.40 Total: 23.12 kcal Atomic # 6 Polarization: 14.22 SS G_CDS: 4.37 Total: 18.59 kcal Atomic # 7 Polarization: -96.94 SS G_CDS: -3.74 Total: -100.68 kcal Atomic # 8 Polarization: -60.03 SS G_CDS: -0.10 Total: -60.13 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -76.66 2.96 -73.70 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318209430.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.468 kcal (2) G-P(sol) polarization free energy of solvation -76.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds