Wall clock time and date at job start Sun Mar 29 2020 22:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.47309 * 2 1 4 4 C 1.50695 * 109.47062 * 119.99938 * 2 1 3 5 5 H 1.08004 * 120.00135 * 119.99754 * 4 2 1 6 6 C 1.37871 * 120.00219 * 299.99929 * 4 2 1 7 7 N 1.31519 * 119.99826 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00174 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47071 * 60.00063 * 8 6 4 10 10 H 1.48503 * 109.47182 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47469 * 300.00178 * 8 6 4 12 12 C 1.50700 * 109.47164 * 240.00180 * 2 1 3 13 13 O 1.20829 * 119.99886 * 240.00046 * 12 2 1 14 14 O 1.34229 * 120.00153 * 59.99871 * 12 2 1 15 15 C 1.45200 * 116.99814 * 179.97438 * 14 12 2 16 16 C 1.53004 * 109.46952 * 179.97438 * 15 14 12 17 17 C 1.54894 * 110.48128 * 68.24508 * 16 15 14 18 18 C 1.55238 * 102.58338 * 156.67574 * 17 16 15 19 19 C 1.54266 * 104.23333 * 322.08174 * 18 17 16 20 20 C 1.53869 * 106.59800 * 23.61579 * 19 18 17 21 21 H 1.09008 * 109.47081 * 60.00070 * 1 2 3 22 22 H 1.09003 * 109.47194 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47378 * 300.00094 * 1 2 3 24 24 H 0.97003 * 119.99673 * 179.97438 * 7 6 4 25 25 H 1.09002 * 109.47167 * 60.00825 * 15 14 12 26 26 H 1.08991 * 109.47344 * 300.00035 * 15 14 12 27 27 H 1.09002 * 110.43542 * 305.70356 * 16 15 14 28 28 H 1.08996 * 110.75388 * 275.05927 * 17 16 15 29 29 H 1.08993 * 110.76071 * 38.44153 * 17 16 15 30 30 H 1.09005 * 110.46917 * 203.39204 * 18 17 16 31 31 H 1.09007 * 110.58541 * 80.83124 * 18 17 16 32 32 H 1.08999 * 110.03060 * 264.32313 * 19 18 17 33 33 H 1.09006 * 110.06829 * 142.91691 * 19 18 17 34 34 H 1.09001 * 110.02983 * 240.71432 * 20 19 18 35 35 H 1.08996 * 110.07773 * 119.30576 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9427 0.8297 2.6033 8 14 2.3213 -1.1204 4.0079 9 1 3.8063 -1.1210 4.0081 10 1 1.8259 -0.4206 5.2204 11 1 1.8258 -2.5202 4.0077 12 6 2.0323 -0.7104 -1.2305 13 8 2.7270 -1.6928 -1.1196 14 8 1.7080 -0.2518 -2.4496 15 6 2.2277 -0.9857 -3.5896 16 6 1.7556 -0.3192 -4.8834 17 6 2.4253 1.0669 -5.0548 18 6 2.3422 1.2955 -6.5880 19 6 2.6021 -0.0991 -7.1940 20 6 2.2291 -1.1258 -6.1103 21 1 -0.3634 0.5139 -0.8901 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 0.7081 1.1609 3.4844 25 1 1.8642 -2.0128 -3.5569 26 1 3.3171 -0.9845 -3.5565 27 1 0.6699 -0.2215 -4.8870 28 1 1.8685 1.8340 -4.5167 29 1 3.4634 1.0380 -4.7241 30 1 3.1086 2.0004 -6.9104 31 1 1.3522 1.6551 -6.8688 32 1 3.6546 -0.2010 -7.4585 33 1 1.9796 -0.2453 -8.0768 34 1 3.1006 -1.7260 -5.8488 35 1 1.4254 -1.7703 -6.4662 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327174401.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:00 Heat of formation + Delta-G solvation = -119.558712 kcal Electronic energy + Delta-G solvation = -15708.030842 eV Core-core repulsion = 13090.869997 eV Total energy + Delta-G solvation = -2617.160845 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.136 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.60407 -38.08221 -35.49736 -33.84883 -30.89907 -30.10919 -28.71076 -25.19086 -24.90077 -22.66174 -20.58935 -19.96652 -19.50247 -16.77332 -16.05256 -15.94520 -15.72957 -15.19799 -14.79478 -14.14203 -13.43018 -13.35731 -12.78521 -12.68182 -11.82432 -11.56552 -11.46050 -11.25144 -11.08593 -11.01451 -10.84764 -10.70218 -10.66737 -10.58888 -10.50861 -10.30037 -10.03293 -9.87305 -9.05710 -9.02760 -8.42306 -6.08311 -4.13649 3.33553 3.36407 3.37630 3.39735 3.57788 4.42509 4.55338 4.58414 4.72022 5.20869 5.24965 5.37036 5.42308 5.48848 5.54193 5.59008 5.73114 5.79539 5.83430 5.98349 6.01216 6.16613 6.24252 6.29192 6.44555 6.69227 6.90316 6.91529 7.29618 7.47134 7.76751 7.97080 8.17290 8.89639 8.97370 9.51693 10.99067 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.060907 B = 0.005263 C = 0.005070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.603444 B = 5318.767967 C = 5521.709991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.057 3.943 3 H 0.063 0.937 4 C -0.513 4.513 5 H 0.074 0.926 6 C 0.061 3.939 7 N -0.893 5.893 8 Si 0.905 3.095 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.276 1.276 12 C 0.464 3.536 13 O -0.520 6.520 14 O -0.365 6.365 15 C 0.070 3.930 16 C -0.092 4.092 17 C -0.117 4.117 18 C -0.126 4.126 19 C -0.123 4.123 20 C -0.118 4.118 21 H 0.023 0.977 22 H 0.030 0.970 23 H 0.095 0.905 24 H 0.263 0.737 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.594 0.481 -15.653 15.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.038 3.962 3 H 0.081 0.919 4 C -0.551 4.551 5 H 0.093 0.907 6 C -0.140 4.140 7 N -0.531 5.531 8 Si 0.733 3.267 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.201 1.201 12 C 0.309 3.691 13 O -0.408 6.408 14 O -0.283 6.283 15 C -0.004 4.004 16 C -0.110 4.110 17 C -0.155 4.155 18 C -0.164 4.164 19 C -0.161 4.161 20 C -0.156 4.156 21 H 0.042 0.958 22 H 0.049 0.951 23 H 0.114 0.886 24 H 0.073 0.927 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.102 0.898 28 H 0.092 0.908 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.731 0.283 -15.510 15.530 hybrid contribution 0.406 -0.625 0.761 1.065 sum 1.137 -0.342 -14.749 14.797 Atomic orbital electron populations 1.21724 0.95663 0.99981 1.01684 1.18737 0.94829 0.96942 0.85673 0.91893 1.21100 1.31891 1.13212 0.88851 0.90746 1.24935 0.94924 0.95026 0.99103 1.69876 1.36504 1.22842 1.23908 0.86435 0.79279 0.79670 0.81347 1.20099 1.21214 1.20110 1.25317 0.76531 0.83168 0.84109 1.90488 1.36508 1.26864 1.86909 1.86606 1.70369 1.55904 1.15414 1.22894 0.98458 0.95189 0.83905 1.22018 1.01241 0.95593 0.92163 1.22599 1.00928 0.96647 0.95308 1.22435 1.01484 0.96642 0.95803 1.22111 1.01169 0.94890 0.97881 1.22119 1.01222 0.97849 0.94421 0.95789 0.95062 0.88608 0.92672 0.92110 0.91979 0.89761 0.90767 0.91430 0.91829 0.91660 0.91921 0.91973 0.91537 0.91554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.20 8.90 37.16 0.33 -2.87 16 2 C 0.06 1.48 2.74 -92.93 -0.25 1.23 16 3 H 0.06 1.68 8.14 -51.93 -0.42 1.26 16 4 C -0.51 -14.62 8.37 -34.45 -0.29 -14.91 16 5 H 0.07 2.21 6.76 -52.48 -0.35 1.85 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -25.06 11.32 55.43 0.63 -24.44 16 8 Si 0.91 21.68 29.54 -169.99 -5.02 16.66 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 12 C 0.46 11.21 7.25 36.01 0.26 11.47 16 13 O -0.52 -13.65 15.21 -18.75 -0.29 -13.93 16 14 O -0.36 -7.44 10.01 -39.26 -0.39 -7.84 16 15 C 0.07 1.15 4.74 37.16 0.18 1.33 16 16 C -0.09 -1.17 3.14 -88.96 -0.28 -1.45 16 17 C -0.12 -1.42 6.25 -24.55 -0.15 -1.57 16 18 C -0.13 -1.22 6.84 -24.88 -0.17 -1.39 16 19 C -0.12 -1.12 6.80 -25.62 -0.17 -1.29 16 20 C -0.12 -1.23 6.37 -25.62 -0.16 -1.39 16 21 H 0.02 0.50 8.11 -51.92 -0.42 0.08 16 22 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.10 2.47 6.07 -51.93 -0.32 2.16 16 24 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 25 H 0.06 1.00 8.13 -51.93 -0.42 0.58 16 26 H 0.06 1.02 8.05 -51.93 -0.42 0.60 16 27 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.07 0.84 8.00 -51.93 -0.42 0.43 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.69 7.84 -51.93 -0.41 0.28 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 288.65 15.07 4.35 4.35 Total: -1.00 -29.71 288.65 -7.23 -36.93 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: -5.69 Total: -2.50 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: -0.81 Total: -9.23 kcal Atomic # 7 Polarization: -25.06 SS G_CDS: 0.63 Total: -24.44 kcal Atomic # 8 Polarization: -21.09 SS G_CDS: -0.68 Total: -21.77 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -29.71 -7.23 -36.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327174401.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.625 kcal (2) G-P(sol) polarization free energy of solvation -29.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds