Wall clock time and date at job start Sun Mar 29 2020 21:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.27564 * 126.42261 * 2 1 4 4 N 1.39147 * 113.16849 * 180.02562 * 3 2 1 5 5 C 1.46504 * 124.43815 * 180.02562 * 4 3 2 6 6 C 1.50702 * 109.46829 * 270.00402 * 5 4 3 7 7 H 1.07997 * 120.00476 * 0.02562 * 6 5 4 8 8 C 1.37883 * 119.99225 * 180.02562 * 6 5 4 9 9 N 1.31509 * 120.00257 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99377 * 180.02562 * 8 6 5 11 11 H 1.48490 * 109.47283 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47024 * 120.00378 * 10 8 6 13 13 H 1.48500 * 109.46597 * 239.99934 * 10 8 6 14 14 C 1.34950 * 111.12079 * 0.02562 * 4 3 2 15 15 O 1.21297 * 127.49623 * 180.26544 * 14 4 3 16 16 C 1.51441 * 126.41198 * 180.02562 * 2 1 3 17 17 H 1.09006 * 110.61193 * 61.45164 * 16 2 1 18 18 C 1.53000 * 110.74270 * 298.53891 * 16 2 1 19 19 C 1.52999 * 109.46969 * 179.34251 * 18 16 2 20 20 O 1.42907 * 109.47010 * 180.02562 * 19 18 16 21 21 H 1.09000 * 109.46967 * 269.95719 * 1 2 3 22 22 H 1.08998 * 109.46685 * 29.95318 * 1 2 3 23 23 H 1.08995 * 109.47149 * 149.95343 * 1 2 3 24 24 H 1.08998 * 109.46934 * 30.00120 * 5 4 3 25 25 H 1.09000 * 109.46848 * 150.00208 * 5 4 3 26 26 H 0.97005 * 119.99761 * 180.02562 * 9 8 6 27 27 H 1.08999 * 109.47458 * 299.34391 * 18 16 2 28 28 H 1.09003 * 109.46690 * 59.34875 * 18 16 2 29 29 H 1.08995 * 109.47744 * 299.99923 * 19 18 16 30 30 H 1.08994 * 109.47487 * 60.00749 * 19 18 16 31 31 H 0.96696 * 113.99794 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2645 1.0265 0.0000 4 7 3.6189 0.7074 -0.0006 5 6 4.7023 1.6936 -0.0002 6 6 5.0733 2.0327 -1.4209 7 1 4.5538 1.5613 -2.2420 8 6 6.0762 2.9450 -1.6723 9 7 6.7084 3.5195 -0.6725 10 14 6.5356 3.3660 -3.4334 11 1 5.6809 2.5897 -4.3670 12 1 6.3302 4.8184 -3.6648 13 1 7.9616 3.0241 -3.6680 14 6 3.8036 -0.6294 -0.0016 15 8 4.8579 -1.2291 0.0022 16 6 2.4060 -1.2188 -0.0005 17 1 2.2414 -1.8166 -0.8970 18 6 2.1775 -2.0612 1.2560 19 6 3.0868 -3.2911 1.2178 20 8 2.8730 -4.0782 2.3912 21 1 -0.3633 -0.0008 1.0277 22 1 -0.3632 0.8904 -0.5131 23 1 -0.3633 -0.8895 -0.5145 24 1 4.3721 2.5959 0.5144 25 1 5.5702 1.2795 0.5131 26 1 7.4137 4.1616 -0.8495 27 1 2.4084 -1.4660 2.1395 28 1 1.1360 -2.3804 1.2950 29 1 2.8559 -3.8864 0.3344 30 1 4.1282 -2.9720 1.1788 31 1 3.4179 -4.8758 2.4344 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330709923.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:45 Heat of formation + Delta-G solvation = -69.891225 kcal Electronic energy + Delta-G solvation = -15615.003089 eV Core-core repulsion = 12896.455645 eV Total energy + Delta-G solvation = -2718.547445 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.33508 -38.50798 -37.96391 -36.00452 -34.47205 -32.96451 -30.62765 -28.63558 -27.63746 -24.99612 -23.27071 -21.69986 -20.45947 -18.90105 -18.36388 -17.88581 -17.20147 -16.49523 -16.23682 -15.99036 -15.20447 -14.90834 -14.55974 -14.38139 -14.12683 -13.73972 -13.48447 -13.23556 -13.08051 -12.88893 -12.73509 -12.59252 -12.35825 -12.25740 -11.64697 -11.62080 -10.96776 -10.78074 -10.46670 -9.56319 -8.35528 -6.52689 0.67622 1.32071 1.34546 1.46179 1.63065 1.73112 2.31869 2.79083 2.95381 3.01104 3.31987 3.82996 4.04431 4.17536 4.31687 4.45821 4.60745 4.70077 4.84980 4.88202 4.93528 4.97862 5.03061 5.22786 5.34016 5.53420 5.64655 5.82899 6.51376 6.77962 6.83654 7.01905 7.19182 8.72866 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.033892 B = 0.007139 C = 0.006409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.963882 B = 3920.933901 C = 4367.836090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.101 3.899 3 N -0.274 5.274 4 N -0.465 5.465 5 C 0.282 3.718 6 C -0.554 4.554 7 H 0.050 0.950 8 C 0.011 3.989 9 N -0.925 5.925 10 Si 0.979 3.021 11 H -0.269 1.269 12 H -0.265 1.265 13 H -0.273 1.273 14 C 0.472 3.528 15 O -0.548 6.548 16 C -0.127 4.127 17 H 0.160 0.840 18 C -0.077 4.077 19 C 0.069 3.931 20 O -0.587 6.587 21 H 0.109 0.891 22 H 0.085 0.915 23 H 0.121 0.879 24 H 0.027 0.973 25 H 0.015 0.985 26 H 0.273 0.727 27 H 0.051 0.949 28 H 0.129 0.871 29 H 0.072 0.928 30 H 0.030 0.970 31 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.358 -11.985 1.167 18.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.092 4.092 3 N -0.080 5.080 4 N -0.282 5.282 5 C 0.162 3.838 6 C -0.592 4.592 7 H 0.068 0.932 8 C -0.188 4.188 9 N -0.564 5.564 10 Si 0.801 3.199 11 H -0.193 1.193 12 H -0.190 1.190 13 H -0.198 1.198 14 C 0.261 3.739 15 O -0.425 6.425 16 C -0.150 4.150 17 H 0.177 0.823 18 C -0.116 4.116 19 C -0.009 4.009 20 O -0.395 6.395 21 H 0.127 0.873 22 H 0.104 0.896 23 H 0.139 0.861 24 H 0.045 0.955 25 H 0.033 0.967 26 H 0.082 0.918 27 H 0.070 0.930 28 H 0.147 0.853 29 H 0.090 0.910 30 H 0.049 0.951 31 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -13.821 -10.579 1.355 17.458 hybrid contribution 1.651 -0.528 -0.765 1.895 sum -12.170 -11.107 0.590 16.487 Atomic orbital electron populations 1.20625 0.80487 1.06044 1.05737 1.26260 0.99221 0.88576 0.95100 1.74620 0.89115 1.29004 1.15258 1.50226 1.03603 1.07066 1.67313 1.18833 0.81742 0.85995 0.97224 1.21581 1.19931 1.25604 0.92113 0.93169 1.25925 0.95077 0.94944 1.02896 1.70043 1.24285 1.28731 1.33295 0.85210 0.78198 0.78538 0.77906 1.19344 1.19033 1.19791 1.22177 0.92562 0.83284 0.75906 1.90636 1.33145 1.66810 1.51933 1.21820 0.90301 0.98212 1.04669 0.82280 1.21074 1.03366 0.94014 0.93136 1.22207 0.98308 0.92235 0.88121 1.86345 1.68455 1.41204 1.43545 0.87305 0.89594 0.86088 0.95531 0.96673 0.91826 0.93027 0.85251 0.90966 0.95141 0.75192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.99 10.49 71.24 0.75 -0.24 16 2 C 0.10 2.81 6.94 46.83 0.33 3.14 16 3 N -0.27 -11.14 12.02 -40.84 -0.49 -11.63 16 4 N -0.46 -22.98 3.52 -465.39 -1.64 -24.62 16 5 C 0.28 16.54 5.99 85.63 0.51 17.05 16 6 C -0.55 -33.82 9.39 25.60 0.24 -33.58 16 7 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 8 C 0.01 0.68 5.46 84.66 0.46 1.14 16 9 N -0.92 -56.80 13.29 21.45 0.28 -56.51 16 10 Si 0.98 45.72 29.54 68.60 2.03 47.75 16 11 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 12 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 13 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 14 C 0.47 21.14 7.56 87.94 0.66 21.81 16 15 O -0.55 -28.09 15.99 -3.08 -0.05 -28.14 16 16 C -0.13 -3.64 3.06 -11.74 -0.04 -3.68 16 17 H 0.16 3.60 8.14 -2.38 -0.02 3.58 16 18 C -0.08 -1.84 5.13 30.59 0.16 -1.68 16 19 C 0.07 1.70 6.85 71.98 0.49 2.20 16 20 O -0.59 -13.22 13.66 -148.98 -2.04 -15.25 16 21 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 22 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 23 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 24 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.02 0.98 8.03 -2.39 -0.02 0.96 16 26 H 0.27 15.45 8.31 -92.70 -0.77 14.68 16 27 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.13 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.03 0.98 6.20 -2.39 -0.01 0.97 16 31 H 0.40 5.40 9.12 -74.06 -0.68 4.72 16 Total: -1.00 -81.06 274.82 2.13 -78.94 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: 0.46 Total: 3.32 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: 3.57 Total: 6.15 kcal Atomic # 7 Polarization: -90.91 SS G_CDS: -1.85 Total: -92.76 kcal Atomic # 8 Polarization: -41.31 SS G_CDS: -2.08 Total: -43.40 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -81.06 2.13 -78.94 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330709923.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.044 kcal (2) G-P(sol) polarization free energy of solvation -81.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds