Wall clock time and date at job start Sun Mar 29 2020 21:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 119.99956 * 2 1 4 4 H 1.48498 * 109.46912 * 89.99923 * 3 2 1 5 5 H 1.48494 * 109.47155 * 209.99980 * 3 2 1 6 6 H 1.48497 * 109.47198 * 330.00123 * 3 2 1 7 7 C 1.38809 * 120.00072 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00287 * 162.57636 * 7 2 1 9 9 N 1.36940 * 119.99869 * 342.57456 * 7 2 1 10 10 C 1.46933 * 120.61254 * 151.87748 * 9 7 2 11 11 C 1.53695 * 108.50347 * 125.84352 * 10 9 7 12 12 C 1.52551 * 109.35947 * 54.08977 * 11 10 9 13 13 C 1.53715 * 110.14204 * 177.75797 * 12 11 10 14 14 N 1.47203 * 103.60196 * 241.21208 * 13 12 11 15 15 C 1.34074 * 108.85664 * 0.02562 * 14 13 12 16 16 O 1.21509 * 123.08881 * 180.02562 * 15 14 13 17 17 O 1.33918 * 113.81675 * 0.02562 * 15 14 13 18 18 C 1.52546 * 110.73771 * 299.83048 * 12 11 10 19 19 C 1.46938 * 120.61375 * 332.15949 * 9 7 2 20 20 H 0.97003 * 120.00118 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.59542 * 245.66489 * 10 9 7 22 22 H 1.09007 * 109.59242 * 6.10966 * 10 9 7 23 23 H 1.09006 * 109.61142 * 294.06039 * 11 10 9 24 24 H 1.08995 * 109.41355 * 173.99644 * 11 10 9 25 25 H 1.09001 * 110.59782 * 359.73925 * 13 12 11 26 26 H 1.08997 * 110.59919 * 122.52492 * 13 12 11 27 27 H 0.97008 * 125.57148 * 180.02562 * 14 13 12 28 28 H 1.08996 * 109.48379 * 300.06173 * 18 12 11 29 29 H 1.09004 * 109.48001 * 180.02562 * 18 12 11 30 30 H 1.09001 * 109.59286 * 353.88640 * 19 9 7 31 31 H 1.08998 * 109.59448 * 114.33637 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0464 1.4001 5 1 3.5477 1.4402 -0.7000 6 1 1.4476 2.6527 -0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0530 -1.2235 -0.2806 9 7 1.3727 -2.3610 0.3541 10 6 1.8134 -3.6535 -0.1881 11 6 2.0880 -4.6068 0.9858 12 6 0.8545 -4.6753 1.8808 13 6 1.0895 -5.6676 3.0310 14 7 0.0494 -6.6888 2.8252 15 6 -0.6729 -6.3600 1.7446 16 8 -1.6033 -7.0286 1.3400 17 8 -0.2746 -5.2269 1.1521 18 6 0.5141 -3.2966 2.4378 19 6 0.2313 -2.3342 1.2791 20 1 -0.4850 0.8401 -0.0004 21 1 1.0318 -4.0686 -0.8245 22 1 2.7253 -3.5145 -0.7690 23 1 2.9366 -4.2406 1.5637 24 1 2.3128 -5.6011 0.6001 25 1 2.0824 -6.1114 2.9577 26 1 0.9611 -5.1749 3.9947 27 1 -0.0905 -7.4717 3.3807 28 1 1.3543 -2.9235 3.0233 29 1 -0.3684 -3.3691 3.0735 30 1 0.0987 -1.3241 1.6669 31 1 -0.6714 -2.6482 0.7550 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334679860.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:21 Heat of formation + Delta-G solvation = -50.610583 kcal Electronic energy + Delta-G solvation = -16399.628359 eV Core-core repulsion = 13681.916986 eV Total energy + Delta-G solvation = -2717.711373 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.49678 -37.77005 -35.96572 -34.51444 -32.77785 -30.65003 -29.96133 -26.71290 -24.11656 -22.56114 -22.29416 -21.70070 -19.67131 -17.44663 -16.76074 -16.34594 -15.79970 -14.97895 -14.60595 -14.19832 -13.78745 -13.63275 -13.35188 -13.30666 -12.96139 -12.49498 -11.58924 -11.44349 -11.08896 -10.97078 -10.76721 -10.49740 -10.46165 -10.30643 -9.94460 -9.66914 -9.60983 -9.23746 -8.50220 -6.72627 -5.81720 -3.25361 2.95586 2.97738 3.35625 3.42742 3.44399 3.77040 4.33858 4.46665 4.79692 4.96875 5.27718 5.35047 5.43126 5.49690 5.56465 5.85556 6.07808 6.15375 6.27397 6.33210 6.51231 6.66607 6.85597 6.93636 7.28342 7.57521 7.63112 7.76348 8.29324 8.40833 9.17023 9.80088 10.37313 11.26701 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.054706 B = 0.007521 C = 0.007324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.700669 B = 3721.794090 C = 3822.158714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.003 3.997 3 Si 0.903 3.097 4 H -0.287 1.287 5 H -0.279 1.279 6 H -0.291 1.291 7 C -0.257 4.257 8 H 0.068 0.932 9 N -0.591 5.591 10 C 0.145 3.855 11 C -0.134 4.134 12 C 0.108 3.892 13 C 0.071 3.929 14 N -0.742 5.742 15 C 0.642 3.358 16 O -0.538 6.538 17 O -0.305 6.305 18 C -0.142 4.142 19 C 0.172 3.828 20 H 0.255 0.745 21 H 0.028 0.972 22 H 0.059 0.941 23 H 0.084 0.916 24 H 0.061 0.939 25 H 0.089 0.911 26 H 0.090 0.910 27 H 0.429 0.571 28 H 0.080 0.920 29 H 0.060 0.940 30 H 0.093 0.907 31 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.661 -9.220 8.046 13.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.196 4.196 3 Si 0.733 3.267 4 H -0.214 1.214 5 H -0.204 1.204 6 H -0.218 1.218 7 C -0.386 4.386 8 H 0.085 0.915 9 N -0.314 5.314 10 C 0.019 3.981 11 C -0.173 4.173 12 C 0.070 3.930 13 C -0.054 4.054 14 N -0.414 5.414 15 C 0.395 3.605 16 O -0.424 6.424 17 O -0.214 6.214 18 C -0.182 4.182 19 C 0.046 3.954 20 H 0.065 0.935 21 H 0.046 0.954 22 H 0.078 0.922 23 H 0.102 0.898 24 H 0.079 0.921 25 H 0.107 0.893 26 H 0.108 0.892 27 H 0.270 0.730 28 H 0.099 0.901 29 H 0.078 0.922 30 H 0.111 0.889 31 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 4.013 -9.108 7.472 12.445 hybrid contribution 0.427 0.445 0.459 0.768 sum 4.440 -8.663 7.930 12.556 Atomic orbital electron populations 1.70042 1.05276 1.25629 1.53438 1.25080 0.95276 0.98512 1.00729 0.86277 0.79112 0.83631 0.77660 1.21437 1.20415 1.21758 1.19199 0.92774 0.84728 1.41919 0.91460 1.44095 1.36109 1.01513 1.49670 1.20950 0.98229 0.86696 0.92244 1.22369 0.94599 1.00851 0.99503 1.22890 0.85774 0.94505 0.89810 1.23053 0.92659 0.89468 1.00251 1.46017 1.35259 1.28749 1.31399 1.18788 0.81785 0.80600 0.79310 1.91020 1.29717 1.53149 1.68515 1.87412 1.47729 1.35501 1.50758 1.22492 1.01478 0.93210 1.00983 1.20772 0.89261 0.97924 0.87445 0.93508 0.95438 0.92222 0.89796 0.92076 0.89324 0.89173 0.72981 0.90104 0.92164 0.88921 0.95426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.87 11.19 55.49 0.62 -25.25 16 2 C 0.00 0.08 4.91 -17.43 -0.09 0.00 16 3 Si 0.90 21.16 29.59 -169.99 -5.03 16.13 16 4 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.26 -6.83 9.58 -15.06 -0.14 -6.97 16 8 H 0.07 1.74 7.89 -52.49 -0.41 1.33 16 9 N -0.59 -14.38 2.98 -171.95 -0.51 -14.89 16 10 C 0.15 2.98 6.38 -3.45 -0.02 2.96 16 11 C -0.13 -2.11 4.95 -26.60 -0.13 -2.24 16 12 C 0.11 1.71 0.91 -90.71 -0.08 1.62 16 13 C 0.07 0.79 7.33 -3.29 -0.02 0.77 16 14 N -0.74 -9.20 6.41 -64.79 -0.42 -9.61 16 15 C 0.64 11.40 9.16 53.74 0.49 11.89 16 16 O -0.54 -11.35 18.04 -19.11 -0.34 -11.69 16 17 O -0.30 -5.87 9.76 -38.20 -0.37 -6.24 16 18 C -0.14 -2.49 4.93 -26.83 -0.13 -2.62 16 19 C 0.17 4.01 5.16 -3.67 -0.02 3.99 16 20 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 21 H 0.03 0.61 7.98 -51.93 -0.41 0.20 16 22 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 23 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 24 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.09 0.79 7.71 -51.93 -0.40 0.39 16 26 H 0.09 0.84 7.71 -51.93 -0.40 0.44 16 27 H 0.43 4.00 8.96 -40.82 -0.37 3.63 16 28 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.09 2.39 6.02 -51.93 -0.31 2.08 16 31 H 0.03 0.72 7.98 -51.93 -0.41 0.30 16 LS Contribution 255.66 15.07 3.85 3.85 Total: -1.00 -32.28 255.66 -6.31 -38.59 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: -3.96 Total: -0.28 kcal Atomic # 6 Polarization: 9.54 SS G_CDS: -0.15 Total: 9.40 kcal Atomic # 7 Polarization: -49.44 SS G_CDS: -0.31 Total: -49.75 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: -0.72 Total: -17.94 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.03 Total: 16.13 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -32.28 -6.31 -38.59 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334679860.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.018 kcal (2) G-P(sol) polarization free energy of solvation -32.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds