Wall clock time and date at job start Sun Mar 29 2020 22:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.45754 * 117.94764 * 2 1 4 4 C 1.52740 * 110.58815 * 198.89519 * 3 2 1 5 5 C 1.53343 * 108.81853 * 309.61254 * 4 3 2 6 6 H 1.09004 * 109.67959 * 307.63745 * 5 4 3 7 7 N 1.46504 * 109.70273 * 187.12415 * 5 4 3 8 8 C 1.34781 * 120.00184 * 156.02026 * 7 5 4 9 9 O 1.21689 * 119.99842 * 359.97438 * 8 7 5 10 10 C 1.46372 * 119.99827 * 180.02562 * 8 7 5 11 11 H 1.08004 * 120.00277 * 359.97438 * 10 8 7 12 12 C 1.40054 * 119.99695 * 179.97438 * 10 8 7 13 13 N 1.30664 * 119.99643 * 359.97438 * 12 10 8 14 14 Si 1.86793 * 119.99730 * 179.97438 * 12 10 8 15 15 H 1.48502 * 109.47415 * 60.00077 * 14 12 10 16 16 H 1.48507 * 109.47068 * 179.97438 * 14 12 10 17 17 H 1.48494 * 109.47433 * 299.99835 * 14 12 10 18 18 C 1.53065 * 108.42690 * 67.37310 * 5 4 3 19 19 C 1.33353 * 117.94400 * 180.26561 * 2 1 3 20 20 O 1.21275 * 118.24693 * 357.75403 * 19 2 1 21 21 H 1.08995 * 109.47304 * 179.73658 * 1 2 3 22 22 H 1.09001 * 109.46512 * 299.73723 * 1 2 3 23 23 H 1.08998 * 109.47174 * 59.72845 * 1 2 3 24 24 H 1.09004 * 109.29812 * 319.39024 * 3 2 1 25 25 H 1.08997 * 109.30027 * 78.76082 * 3 2 1 26 26 H 1.09002 * 109.66020 * 189.73240 * 4 3 2 27 27 H 1.08995 * 109.53104 * 69.41641 * 4 3 2 28 28 H 0.97000 * 119.99630 * 336.00709 * 7 5 4 29 29 H 0.97010 * 119.99476 * 180.02562 * 13 12 10 30 30 H 1.08998 * 109.40617 * 190.97226 * 18 5 4 31 31 H 1.08998 * 109.40461 * 71.22379 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1482 1.2876 0.0000 4 6 3.5949 1.1280 -0.4630 5 6 4.2493 -0.0030 0.3395 6 1 4.1088 0.1747 1.4058 7 7 5.6809 -0.0613 0.0338 8 6 6.5377 -0.6058 0.9203 9 8 6.1222 -1.0486 1.9749 10 6 7.9680 -0.6636 0.6150 11 1 8.3368 -0.2702 -0.3208 12 6 8.8584 -1.2290 1.5365 13 7 8.4122 -1.7044 2.6688 14 14 10.6837 -1.3033 1.1465 15 1 11.2031 0.0731 0.9439 16 1 11.4055 -1.9429 2.2759 17 1 10.8938 -2.0987 -0.0897 18 6 3.5839 -1.3238 -0.0548 19 6 2.0900 -1.1780 -0.0055 20 8 1.4159 -2.1855 0.0317 21 1 -0.3634 -1.0276 -0.0047 22 1 -0.3632 0.5098 0.8924 23 1 -0.3633 0.5180 -0.8875 24 1 1.6271 1.9718 -0.6696 25 1 2.1399 1.6998 1.0090 26 1 4.1384 2.0578 -0.2948 27 1 3.6127 0.8809 -1.5245 28 1 6.0120 0.2918 -0.8068 29 1 9.0291 -2.0956 3.3072 30 1 3.8942 -2.1065 0.6374 31 1 3.8880 -1.5948 -1.0658 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344391475.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:03 Heat of formation + Delta-G solvation = -77.639232 kcal Electronic energy + Delta-G solvation = -15711.893187 eV Core-core repulsion = 12993.009764 eV Total energy + Delta-G solvation = -2718.883423 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.28177 -37.60132 -36.07134 -34.26251 -32.45881 -30.93375 -29.41085 -26.97198 -25.81425 -23.98468 -21.79617 -19.64616 -18.59630 -17.16123 -16.39028 -16.23725 -15.79462 -15.35830 -14.37137 -14.23129 -14.04042 -13.59684 -13.02124 -12.62822 -12.47107 -12.27633 -12.15218 -11.80635 -11.47492 -11.14107 -11.05159 -10.73453 -10.52160 -10.39226 -10.27323 -9.59473 -8.87469 -8.66422 -7.67989 -7.61549 -6.21460 -4.67944 2.87347 3.13527 3.14498 3.19694 3.21327 4.06848 4.52948 4.54728 4.76898 4.83605 5.14620 5.25999 5.36424 5.47687 5.54398 5.59138 5.74842 5.81247 5.87162 5.92068 6.06356 6.45814 6.49648 6.55175 7.40426 7.55851 7.86059 8.01206 8.27742 8.35247 8.99349 9.46725 10.56154 10.74140 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.059058 B = 0.006058 C = 0.005795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 473.995441 B = 4620.763906 C = 4830.541145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.612 5.612 3 C 0.120 3.880 4 C -0.144 4.144 5 C 0.156 3.844 6 H 0.083 0.917 7 N -0.761 5.761 8 C 0.554 3.446 9 O -0.578 6.578 10 C -0.546 4.546 11 H 0.067 0.933 12 C 0.088 3.912 13 N -0.767 5.767 14 Si 0.908 3.092 15 H -0.268 1.268 16 H -0.280 1.280 17 H -0.268 1.268 18 C -0.144 4.144 19 C 0.524 3.476 20 O -0.562 6.562 21 H 0.089 0.911 22 H 0.057 0.943 23 H 0.056 0.944 24 H 0.075 0.925 25 H 0.067 0.933 26 H 0.089 0.911 27 H 0.072 0.928 28 H 0.382 0.618 29 H 0.269 0.731 30 H 0.107 0.893 31 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.152 7.509 -7.070 13.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.346 5.346 3 C -0.003 4.003 4 C -0.182 4.182 5 C 0.049 3.951 6 H 0.101 0.899 7 N -0.416 5.416 8 C 0.358 3.642 9 O -0.460 6.460 10 C -0.583 4.583 11 H 0.086 0.914 12 C -0.132 4.132 13 N -0.395 5.395 14 Si 0.733 3.267 15 H -0.193 1.193 16 H -0.206 1.206 17 H -0.193 1.193 18 C -0.185 4.185 19 C 0.314 3.686 20 O -0.441 6.441 21 H 0.108 0.892 22 H 0.076 0.924 23 H 0.075 0.925 24 H 0.093 0.907 25 H 0.085 0.915 26 H 0.108 0.892 27 H 0.090 0.910 28 H 0.213 0.787 29 H 0.080 0.920 30 H 0.125 0.875 31 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -9.726 6.563 -6.060 13.205 hybrid contribution 1.060 0.251 -0.639 1.263 sum -8.666 6.813 -6.699 12.900 Atomic orbital electron populations 1.21716 0.80192 1.04484 1.00875 1.47254 1.07224 1.06346 1.73800 1.21288 0.92950 0.84316 1.01763 1.22160 0.94373 1.00858 1.00793 1.20501 0.83630 0.91178 0.99813 0.89903 1.46204 1.04340 1.68170 1.22836 1.18252 0.86330 0.77170 0.82445 1.90614 1.78854 1.50982 1.25590 1.20842 0.90354 1.42324 1.04744 0.91432 1.25704 1.00249 0.93155 0.94127 1.70005 1.35656 1.27729 1.06128 0.86427 0.82574 0.79067 0.78635 1.19302 1.20560 1.19279 1.22184 0.89141 1.02278 1.04896 1.20439 0.91276 0.82404 0.74517 1.90649 1.66539 1.35963 1.50918 0.89184 0.92447 0.92544 0.90696 0.91524 0.89214 0.90970 0.78662 0.91984 0.87501 0.88575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.79 10.48 59.85 0.63 1.42 16 2 N -0.61 -8.45 3.21 -182.96 -0.59 -9.04 16 3 C 0.12 1.32 6.40 -4.58 -0.03 1.29 16 4 C -0.14 -1.77 5.49 -26.69 -0.15 -1.92 16 5 C 0.16 2.78 2.52 -67.72 -0.17 2.61 16 6 H 0.08 1.71 7.59 -51.93 -0.39 1.31 16 7 N -0.76 -15.83 5.10 -55.01 -0.28 -16.11 16 8 C 0.55 15.16 7.72 -12.99 -0.10 15.06 16 9 O -0.58 -18.20 14.70 5.20 0.08 -18.13 16 10 C -0.55 -14.99 9.54 -35.63 -0.34 -15.33 16 11 H 0.07 1.68 7.85 -52.48 -0.41 1.27 16 12 C 0.09 2.41 5.50 -17.37 -0.10 2.31 16 13 N -0.77 -22.75 11.83 55.55 0.66 -22.10 16 14 Si 0.91 19.82 29.56 -169.99 -5.02 14.80 16 15 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 16 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 17 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 18 C -0.14 -2.63 5.62 -28.10 -0.16 -2.79 16 19 C 0.52 9.21 7.47 -11.87 -0.09 9.12 16 20 O -0.56 -11.61 15.95 5.56 0.09 -11.52 16 21 H 0.09 1.19 6.59 -51.93 -0.34 0.84 16 22 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 25 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.07 0.81 8.12 -51.93 -0.42 0.39 16 28 H 0.38 6.83 8.58 -40.82 -0.35 6.48 16 29 H 0.27 7.29 8.29 -40.82 -0.34 6.95 16 30 H 0.11 2.32 8.14 -51.93 -0.42 1.90 16 31 H 0.10 1.64 8.14 -51.93 -0.42 1.21 16 LS Contribution 266.37 15.07 4.01 4.01 Total: -1.00 -35.29 266.37 -5.57 -40.86 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -4.01 Total: 5.45 kcal Atomic # 6 Polarization: 12.28 SS G_CDS: -0.50 Total: 11.77 kcal Atomic # 7 Polarization: -47.03 SS G_CDS: -0.21 Total: -47.24 kcal Atomic # 8 Polarization: -29.82 SS G_CDS: 0.17 Total: -29.65 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -35.29 -5.57 -40.86 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344391475.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.783 kcal (2) G-P(sol) polarization free energy of solvation -35.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds