Wall clock time and date at job start Sun Mar 29 2020 22:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46918 * 2 1 4 4 H 1.08997 * 109.47006 * 55.00082 * 3 2 1 5 5 C 1.53002 * 109.46847 * 294.99646 * 3 2 1 6 6 C 1.50700 * 109.46668 * 175.00199 * 3 2 1 7 7 O 1.20823 * 120.00658 * 359.97438 * 6 3 2 8 8 O 1.34238 * 119.99613 * 179.97438 * 6 3 2 9 9 C 1.45204 * 116.99974 * 179.97438 * 8 6 3 10 10 H 1.08997 * 109.46844 * 330.00317 * 9 8 6 11 11 C 1.50702 * 109.47064 * 210.00105 * 9 8 6 12 12 H 1.08003 * 119.99700 * 0.02562 * 11 9 8 13 13 C 1.37873 * 119.99831 * 179.97438 * 11 9 8 14 14 N 1.31514 * 120.00337 * 0.02562 * 13 11 9 15 15 Si 1.86803 * 119.99905 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.47052 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47073 * 120.00271 * 15 13 11 18 18 H 1.48502 * 109.46904 * 240.00050 * 15 13 11 19 19 C 1.52996 * 109.46855 * 90.00152 * 9 8 6 20 20 C 1.53002 * 117.49888 * 231.25352 * 19 9 8 21 21 C 1.53000 * 117.50107 * 299.91114 * 19 9 8 22 22 H 1.08998 * 109.47102 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47057 * 300.00034 * 1 2 3 24 24 H 1.08997 * 109.47148 * 59.99922 * 1 2 3 25 25 H 1.08997 * 109.47574 * 239.99868 * 2 1 3 26 26 H 1.09007 * 109.47284 * 119.99497 * 2 1 3 27 27 H 1.08997 * 109.47262 * 300.00374 * 5 3 2 28 28 H 1.08996 * 109.46580 * 60.00820 * 5 3 2 29 29 H 1.09002 * 109.46756 * 179.97438 * 5 3 2 30 30 H 0.96991 * 120.00328 * 179.97438 * 14 13 11 31 31 H 1.09002 * 115.54951 * 85.58326 * 19 9 8 32 32 H 1.09000 * 117.49996 * 215.00804 * 20 19 9 33 33 H 1.08999 * 117.49664 * 0.02562 * 20 19 9 34 34 H 1.09008 * 117.49673 * 359.97438 * 21 19 9 35 35 H 1.08999 * 117.49959 * 144.99502 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 0.8418 5 6 1.6352 2.1265 -1.3074 6 6 3.5419 1.4443 0.1238 7 8 4.1427 0.3992 0.2043 8 8 4.2122 2.6071 0.1446 9 6 5.6572 2.5330 0.2666 10 1 5.9288 1.6412 0.8314 11 6 6.1641 3.7567 0.9853 12 1 5.4697 4.5142 1.3175 13 6 7.5143 3.9087 1.2195 14 7 8.3599 2.9861 0.8153 15 14 8.1426 5.4253 2.1110 16 1 6.9979 6.3055 2.4578 17 1 8.8454 5.0139 3.3527 18 1 9.0842 6.1625 1.2304 19 6 6.2837 2.4641 -1.1275 20 6 7.2901 1.3432 -1.3952 21 6 5.8938 1.2839 -2.0198 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5138 0.8901 27 1 2.0698 1.5874 -2.1492 28 1 0.5489 2.1252 -1.3969 29 1 1.9981 3.1543 -1.3072 30 1 9.3097 3.0932 0.9798 31 1 6.4596 3.4246 -1.6119 32 1 8.1281 1.5662 -2.0556 33 1 7.5055 0.6545 -0.5782 34 1 5.1913 0.5562 -1.6133 35 1 5.8132 1.4680 -3.0911 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347938075.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:05 Heat of formation + Delta-G solvation = -84.330949 kcal Electronic energy + Delta-G solvation = -16297.209824 eV Core-core repulsion = 13681.576570 eV Total energy + Delta-G solvation = -2615.633255 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.75668 -36.74833 -35.19011 -34.76123 -32.62564 -29.80606 -27.74893 -25.20513 -23.36314 -21.86778 -21.20240 -19.66655 -18.97965 -17.02573 -16.44655 -15.82851 -15.27547 -14.68474 -14.36930 -13.97377 -13.51004 -13.23311 -12.59609 -12.37984 -12.06731 -11.65052 -11.61140 -11.34086 -11.22549 -11.01719 -10.90152 -10.65626 -10.58620 -10.37625 -10.24893 -9.79159 -9.50973 -9.28608 -8.98509 -8.61303 -8.40656 -6.13260 -4.20962 3.07139 3.24995 3.32147 3.36403 3.70362 4.36264 4.89549 5.03350 5.06482 5.17312 5.31825 5.43974 5.54466 5.59001 5.86914 5.92710 5.97212 6.04188 6.07906 6.15246 6.20460 6.39121 6.41015 6.49197 6.58837 6.74179 7.03193 7.19429 7.31564 7.44847 7.66758 7.89449 8.16178 8.69861 8.94585 9.43805 10.93603 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.034949 B = 0.007689 C = 0.006884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.972555 B = 3640.667598 C = 4066.562861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.109 4.109 3 C -0.087 4.087 4 H 0.100 0.900 5 C -0.142 4.142 6 C 0.456 3.544 7 O -0.521 6.521 8 O -0.351 6.351 9 C 0.247 3.753 10 H 0.047 0.953 11 C -0.526 4.526 12 H 0.069 0.931 13 C 0.068 3.932 14 N -0.873 5.873 15 Si 0.906 3.094 16 H -0.271 1.271 17 H -0.282 1.282 18 H -0.282 1.282 19 C -0.113 4.113 20 C -0.124 4.124 21 C -0.229 4.229 22 H 0.055 0.945 23 H 0.054 0.946 24 H 0.057 0.943 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.263 0.737 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.981 -2.577 -3.244 11.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.147 4.147 3 C -0.106 4.106 4 H 0.118 0.882 5 C -0.200 4.200 6 C 0.299 3.701 7 O -0.412 6.412 8 O -0.267 6.267 9 C 0.195 3.805 10 H 0.065 0.935 11 C -0.564 4.564 12 H 0.087 0.913 13 C -0.136 4.136 14 N -0.510 5.510 15 Si 0.733 3.267 16 H -0.195 1.195 17 H -0.208 1.208 18 H -0.208 1.208 19 C -0.132 4.132 20 C -0.161 4.161 21 C -0.266 4.266 22 H 0.074 0.926 23 H 0.073 0.927 24 H 0.076 0.924 25 H 0.087 0.913 26 H 0.089 0.911 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.073 0.927 31 H 0.106 0.894 32 H 0.092 0.908 33 H 0.106 0.894 34 H 0.112 0.888 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -10.546 -2.899 -3.221 11.402 hybrid contribution 0.728 0.721 0.400 1.100 sum -9.818 -2.178 -2.822 10.445 Atomic orbital electron populations 1.21827 0.95508 1.01632 1.01899 1.21402 0.95253 0.94462 1.03540 1.21033 0.89598 0.98775 1.01242 0.88160 1.21768 1.01361 1.01482 0.95352 1.23393 0.91011 0.83068 0.72623 1.90555 1.70611 1.33701 1.46308 1.86481 1.26480 1.32589 1.81178 1.20186 0.69547 0.99278 0.91519 0.93540 1.20960 0.92455 1.05375 1.37645 0.91301 1.24886 0.96260 0.96958 0.95494 1.70057 1.02787 1.33199 1.44915 0.86319 0.78839 0.82333 0.79224 1.19539 1.20838 1.20820 1.22580 1.02076 0.92060 0.96514 1.22361 0.90459 1.02103 1.01224 1.23279 1.01129 1.04612 0.97580 0.92625 0.92694 0.92403 0.91303 0.91108 0.92319 0.91629 0.91087 0.92718 0.89425 0.90828 0.89383 0.88819 0.91117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.67 37.16 0.36 -1.14 16 2 C -0.11 -1.44 4.75 -26.73 -0.13 -1.57 16 3 C -0.09 -1.31 2.83 -91.77 -0.26 -1.57 16 4 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 5 C -0.14 -1.85 8.88 37.16 0.33 -1.52 16 6 C 0.46 9.47 6.48 36.01 0.23 9.70 16 7 O -0.52 -12.08 12.96 -18.75 -0.24 -12.33 16 8 O -0.35 -8.36 9.75 -39.28 -0.38 -8.74 16 9 C 0.25 6.59 2.25 -27.88 -0.06 6.53 16 10 H 0.05 1.38 6.91 -51.93 -0.36 1.02 16 11 C -0.53 -14.75 8.88 -34.44 -0.31 -15.06 16 12 H 0.07 1.92 7.81 -52.48 -0.41 1.51 16 13 C 0.07 1.86 5.30 -17.82 -0.09 1.77 16 14 N -0.87 -24.47 11.43 55.43 0.63 -23.83 16 15 Si 0.91 21.06 29.54 -169.99 -5.02 16.03 16 16 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 19 C -0.11 -2.82 4.47 -90.62 -0.41 -3.23 16 20 C -0.12 -2.92 9.04 -26.69 -0.24 -3.16 16 21 C -0.23 -5.03 9.80 -26.70 -0.26 -5.29 16 22 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 23 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 24 H 0.06 0.52 6.56 -51.93 -0.34 0.18 16 25 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.07 1.01 7.96 -51.93 -0.41 0.60 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.06 0.66 6.56 -51.93 -0.34 0.32 16 29 H 0.07 0.98 8.11 -51.93 -0.42 0.56 16 30 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 31 H 0.09 2.24 8.11 -51.93 -0.42 1.82 16 32 H 0.07 1.62 8.14 -51.93 -0.42 1.20 16 33 H 0.09 2.21 8.05 -51.93 -0.42 1.80 16 34 H 0.09 2.13 5.37 -51.92 -0.28 1.85 16 35 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 288.11 15.07 4.34 4.34 Total: -1.00 -29.63 288.11 -7.00 -36.64 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -5.50 Total: 2.43 kcal Atomic # 6 Polarization: -13.71 SS G_CDS: -0.84 Total: -14.54 kcal Atomic # 7 Polarization: -24.47 SS G_CDS: 0.63 Total: -23.83 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: -0.63 Total: -21.07 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -29.63 -7.00 -36.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347938075.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.695 kcal (2) G-P(sol) polarization free energy of solvation -29.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds