Wall clock time and date at job start Sun Mar 29 2020 22:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46918 * 2 1 4 4 H 1.08997 * 109.47006 * 55.00082 * 3 2 1 5 5 C 1.53002 * 109.46847 * 294.99646 * 3 2 1 6 6 C 1.50700 * 109.46668 * 175.00199 * 3 2 1 7 7 O 1.20823 * 120.00658 * 359.97438 * 6 3 2 8 8 O 1.34238 * 119.99613 * 179.97438 * 6 3 2 9 9 C 1.45204 * 116.99974 * 179.97438 * 8 6 3 10 10 H 1.08997 * 109.46844 * 330.00317 * 9 8 6 11 11 C 1.50702 * 109.47064 * 210.00105 * 9 8 6 12 12 H 1.08003 * 119.99700 * 0.02562 * 11 9 8 13 13 C 1.37873 * 119.99831 * 179.97438 * 11 9 8 14 14 N 1.31514 * 120.00337 * 0.02562 * 13 11 9 15 15 Si 1.86803 * 119.99905 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.47052 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47073 * 120.00271 * 15 13 11 18 18 H 1.48502 * 109.46904 * 240.00050 * 15 13 11 19 19 C 1.52996 * 109.46855 * 90.00152 * 9 8 6 20 20 C 1.53002 * 117.49888 * 231.25352 * 19 9 8 21 21 C 1.53000 * 117.50107 * 299.91114 * 19 9 8 22 22 H 1.08998 * 109.47102 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47057 * 300.00034 * 1 2 3 24 24 H 1.08997 * 109.47148 * 59.99922 * 1 2 3 25 25 H 1.08997 * 109.47574 * 239.99868 * 2 1 3 26 26 H 1.09007 * 109.47284 * 119.99497 * 2 1 3 27 27 H 1.08997 * 109.47262 * 300.00374 * 5 3 2 28 28 H 1.08996 * 109.46580 * 60.00820 * 5 3 2 29 29 H 1.09002 * 109.46756 * 179.97438 * 5 3 2 30 30 H 0.96991 * 120.00328 * 179.97438 * 14 13 11 31 31 H 1.09002 * 115.54951 * 85.58326 * 19 9 8 32 32 H 1.09000 * 117.49996 * 215.00804 * 20 19 9 33 33 H 1.08999 * 117.49664 * 0.02562 * 20 19 9 34 34 H 1.09008 * 117.49673 * 359.97438 * 21 19 9 35 35 H 1.08999 * 117.49959 * 144.99502 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 0.8418 5 6 1.6352 2.1265 -1.3074 6 6 3.5419 1.4443 0.1238 7 8 4.1427 0.3992 0.2043 8 8 4.2122 2.6071 0.1446 9 6 5.6572 2.5330 0.2666 10 1 5.9288 1.6412 0.8314 11 6 6.1641 3.7567 0.9853 12 1 5.4697 4.5142 1.3175 13 6 7.5143 3.9087 1.2195 14 7 8.3599 2.9861 0.8153 15 14 8.1426 5.4253 2.1110 16 1 6.9979 6.3055 2.4578 17 1 8.8454 5.0139 3.3527 18 1 9.0842 6.1625 1.2304 19 6 6.2837 2.4641 -1.1275 20 6 7.2901 1.3432 -1.3952 21 6 5.8938 1.2839 -2.0198 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5138 0.8901 27 1 2.0698 1.5874 -2.1492 28 1 0.5489 2.1252 -1.3969 29 1 1.9981 3.1543 -1.3072 30 1 9.3097 3.0932 0.9798 31 1 6.4596 3.4246 -1.6119 32 1 8.1281 1.5662 -2.0556 33 1 7.5055 0.6545 -0.5782 34 1 5.1913 0.5562 -1.6133 35 1 5.8132 1.4680 -3.0911 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347938075.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:04 Heat of formation + Delta-G solvation = -100.107020 kcal Electronic energy + Delta-G solvation = -16297.893926 eV Core-core repulsion = 13681.576570 eV Total energy + Delta-G solvation = -2616.317356 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.48897 -38.50380 -36.76992 -36.35943 -34.72021 -30.92246 -29.69206 -26.42638 -25.26779 -23.32060 -23.05650 -21.37934 -20.64470 -18.88657 -18.31028 -17.52594 -16.95504 -16.45491 -15.80446 -15.70521 -14.99151 -14.49989 -14.36650 -13.79269 -13.37346 -13.22304 -13.08327 -12.89977 -12.80747 -12.59150 -12.49640 -12.25627 -12.17149 -11.80000 -11.69733 -11.59418 -11.35749 -11.09614 -10.91510 -10.60499 -10.44198 -8.22628 -6.39790 1.40173 1.41646 1.42444 1.55138 2.05820 2.43518 3.04697 3.21538 3.75435 3.93416 3.99651 4.09917 4.29377 4.35061 4.43005 4.52572 4.58470 4.71269 4.78206 4.80667 4.96220 5.06477 5.10076 5.14908 5.20232 5.25370 5.36167 5.39349 5.48023 5.52486 5.57682 5.86691 6.17684 6.64559 7.05018 7.30995 8.84004 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.034949 B = 0.007689 C = 0.006884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.972555 B = 3640.667598 C = 4066.562861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.106 4.106 3 C -0.081 4.081 4 H 0.119 0.881 5 C -0.138 4.138 6 C 0.446 3.554 7 O -0.551 6.551 8 O -0.361 6.361 9 C 0.252 3.748 10 H 0.003 0.997 11 C -0.556 4.556 12 H 0.063 0.937 13 C 0.024 3.976 14 N -0.896 5.896 15 Si 0.975 3.025 16 H -0.266 1.266 17 H -0.277 1.277 18 H -0.273 1.273 19 C -0.130 4.130 20 C -0.124 4.124 21 C -0.198 4.198 22 H 0.066 0.934 23 H 0.064 0.936 24 H 0.073 0.927 25 H 0.059 0.941 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.104 0.896 29 H 0.059 0.941 30 H 0.267 0.733 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.063 0.937 34 H 0.084 0.916 35 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.396 -1.835 -3.890 13.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.144 4.144 3 C -0.100 4.100 4 H 0.137 0.863 5 C -0.195 4.195 6 C 0.291 3.709 7 O -0.443 6.443 8 O -0.277 6.277 9 C 0.199 3.801 10 H 0.021 0.979 11 C -0.593 4.593 12 H 0.081 0.919 13 C -0.178 4.178 14 N -0.532 5.532 15 Si 0.799 3.201 16 H -0.190 1.190 17 H -0.203 1.203 18 H -0.198 1.198 19 C -0.149 4.149 20 C -0.162 4.162 21 C -0.235 4.235 22 H 0.085 0.915 23 H 0.083 0.917 24 H 0.092 0.908 25 H 0.078 0.922 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.122 0.878 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.098 0.902 32 H 0.108 0.892 33 H 0.081 0.919 34 H 0.103 0.897 35 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -11.984 -2.167 -3.875 12.780 hybrid contribution 1.143 0.415 0.621 1.366 sum -10.841 -1.751 -3.254 11.453 Atomic orbital electron populations 1.21793 0.92251 1.02895 1.03166 1.21407 0.97892 0.92756 1.02306 1.21264 0.84755 1.00688 1.03261 0.86348 1.21789 1.03775 1.00290 0.93624 1.24695 0.93253 0.81741 0.71174 1.90535 1.71782 1.34428 1.47520 1.86479 1.25127 1.34395 1.81723 1.19816 0.71367 0.96904 0.91990 0.97876 1.21225 0.93184 1.05890 1.39021 0.91868 1.25740 0.96154 0.99972 0.95921 1.70169 1.03100 1.34709 1.45258 0.85254 0.78268 0.78525 0.78048 1.19002 1.20288 1.19839 1.22392 1.03702 0.92497 0.96355 1.22283 0.91767 1.01074 1.01037 1.23259 0.99373 1.02047 0.98810 0.91478 0.91710 0.90788 0.92175 0.92898 0.92766 0.87771 0.92144 0.92395 0.90223 0.89211 0.91855 0.89720 0.87771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 9.67 71.98 0.70 -1.69 16 2 C -0.11 -2.66 4.75 30.60 0.15 -2.52 16 3 C -0.08 -2.32 2.83 -11.54 -0.03 -2.36 16 4 H 0.12 3.00 8.14 -2.39 -0.02 2.98 16 5 C -0.14 -3.25 8.88 71.98 0.64 -2.62 16 6 C 0.45 18.83 6.48 71.24 0.46 19.29 16 7 O -0.55 -26.42 12.96 21.97 0.28 -26.14 16 8 O -0.36 -17.62 9.75 -51.49 -0.50 -18.12 16 9 C 0.25 13.96 2.25 29.85 0.07 14.02 16 10 H 0.00 0.22 6.91 -2.39 -0.02 0.20 16 11 C -0.56 -31.95 8.88 25.60 0.23 -31.73 16 12 H 0.06 3.59 7.81 -2.91 -0.02 3.57 16 13 C 0.02 1.33 5.30 84.65 0.45 1.78 16 14 N -0.90 -51.04 11.43 21.45 0.25 -50.80 16 15 Si 0.98 43.27 29.54 68.60 2.03 45.30 16 16 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 17 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 18 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 19 C -0.13 -6.61 4.47 -10.79 -0.05 -6.66 16 20 C -0.12 -5.92 9.04 30.62 0.28 -5.65 16 21 C -0.20 -8.60 9.80 30.62 0.30 -8.30 16 22 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 23 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 24 H 0.07 1.01 6.56 -2.39 -0.02 0.99 16 25 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.05 1.50 7.96 -2.38 -0.02 1.48 16 27 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.10 1.68 6.56 -2.39 -0.02 1.66 16 29 H 0.06 1.57 8.11 -2.39 -0.02 1.55 16 30 H 0.27 14.27 8.31 -92.72 -0.77 13.50 16 31 H 0.08 4.13 8.11 -2.39 -0.02 4.11 16 32 H 0.09 3.93 8.14 -2.39 -0.02 3.91 16 33 H 0.06 3.31 8.05 -2.39 -0.02 3.29 16 34 H 0.08 3.87 5.37 -2.38 -0.01 3.85 16 35 H 0.10 3.83 8.14 -2.39 -0.02 3.81 16 Total: -1.00 -65.78 288.11 6.29 -59.49 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: 1.05 Total: 16.68 kcal Atomic # 6 Polarization: -29.60 SS G_CDS: 3.18 Total: -26.42 kcal Atomic # 7 Polarization: -51.04 SS G_CDS: 0.25 Total: -50.80 kcal Atomic # 8 Polarization: -44.04 SS G_CDS: -0.22 Total: -44.26 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -65.78 6.29 -59.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347938075.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.612 kcal (2) G-P(sol) polarization free energy of solvation -65.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds