Wall clock time and date at job start Sun Mar 29 2020 22:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.47111 * 2 1 4 4 C 1.42901 * 113.99901 * 179.97438 * 3 2 1 5 5 C 1.50706 * 109.46953 * 179.97438 * 4 3 2 6 6 N 1.30276 * 126.27773 * 90.02711 * 5 4 3 7 7 N 1.28669 * 109.37977 * 179.97438 * 6 5 4 8 8 C 1.30273 * 109.37823 * 0.02562 * 7 6 5 9 9 C 1.50701 * 126.28178 * 180.02562 * 8 7 6 10 10 H 1.09000 * 109.47538 * 179.97438 * 9 8 7 11 11 C 1.53001 * 109.47047 * 299.97348 * 9 8 7 12 12 C 1.50696 * 109.47145 * 59.96759 * 9 8 7 13 13 H 1.07998 * 120.00004 * 0.02562 * 12 9 8 14 14 C 1.37882 * 120.00175 * 179.97438 * 12 9 8 15 15 N 1.31512 * 119.99968 * 0.02562 * 14 12 9 16 16 Si 1.86800 * 120.00034 * 180.02562 * 14 12 9 17 17 H 1.48500 * 109.47132 * 90.00626 * 16 14 12 18 18 H 1.48502 * 109.47132 * 210.00253 * 16 14 12 19 19 H 1.48496 * 109.47305 * 330.00173 * 16 14 12 20 20 O 1.34355 * 126.28637 * 269.71311 * 5 4 3 21 21 H 1.08999 * 109.47258 * 299.99573 * 1 2 3 22 22 H 1.08999 * 109.47404 * 59.99729 * 1 2 3 23 23 H 1.08996 * 109.47175 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47258 * 240.00427 * 2 1 3 25 25 H 1.08999 * 109.47404 * 120.00271 * 2 1 3 26 26 H 1.08994 * 109.46951 * 60.00610 * 4 3 2 27 27 H 1.08997 * 109.47177 * 300.00148 * 4 3 2 28 28 H 1.09000 * 109.47267 * 179.97438 * 11 9 8 29 29 H 1.09006 * 109.46869 * 299.99655 * 11 9 8 30 30 H 1.09000 * 109.47291 * 59.99433 * 11 9 8 31 31 H 0.96996 * 120.00747 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8194 2.9162 -0.0001 6 7 4.0182 3.6615 1.0498 7 7 4.3361 4.8507 0.6752 8 6 4.3505 4.9046 -0.6263 9 6 4.6744 6.1139 -1.4653 10 1 4.6048 5.8528 -2.5213 11 6 3.6808 7.2339 -1.1504 12 6 6.0729 6.5810 -1.1543 13 1 6.6679 6.0547 -0.4226 14 6 6.5933 7.6799 -1.8046 15 7 5.8690 8.3206 -2.6959 16 14 8.3272 8.2585 -1.4196 17 1 9.2884 7.5785 -2.3245 18 1 8.4145 9.7276 -1.6186 19 1 8.6572 7.9297 -0.0096 20 8 4.0302 3.6824 -1.0834 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 3.8340 0.9765 -0.8892 27 1 3.8333 0.9767 0.8908 28 1 3.9153 8.1088 -1.7569 29 1 2.6691 6.8960 -1.3754 30 1 3.7502 7.4951 -0.0944 31 1 6.2349 9.0938 -3.1531 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349988876.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:46 Heat of formation + Delta-G solvation = -42.989727 kcal Electronic energy + Delta-G solvation = -15256.046398 eV Core-core repulsion = 12538.665489 eV Total energy + Delta-G solvation = -2717.380908 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -45.18855 -39.18597 -37.16470 -36.75529 -33.84212 -32.67689 -31.09582 -27.87851 -27.38167 -25.32875 -23.72068 -23.40375 -22.34652 -18.81380 -18.42063 -18.18103 -17.31406 -17.15537 -16.85025 -16.53809 -15.40958 -14.79509 -14.38346 -14.05378 -13.70877 -13.43584 -13.29047 -13.07407 -12.92485 -12.87510 -12.65086 -12.47815 -12.32730 -12.22105 -12.14369 -11.84496 -11.35444 -10.73430 -10.60610 -10.45717 -8.24692 -6.40147 0.12674 1.20952 1.39917 1.43493 1.45242 1.56648 2.39279 2.61636 3.05294 3.17768 3.56685 3.87312 4.07265 4.19917 4.32810 4.44054 4.50121 4.52169 4.62325 4.69759 4.83730 4.85036 4.96035 5.04011 5.27387 5.35909 5.61885 5.77409 6.00603 6.04764 6.61078 7.27822 7.33930 8.81736 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.058301 B = 0.005409 C = 0.005226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.154649 B = 5175.667351 C = 5356.104235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.050 3.950 3 O -0.415 6.415 4 C 0.173 3.827 5 C 0.134 3.866 6 N -0.297 5.297 7 N -0.327 5.327 8 C 0.214 3.786 9 C 0.129 3.871 10 H 0.046 0.954 11 C -0.119 4.119 12 C -0.535 4.535 13 H 0.049 0.951 14 C 0.029 3.971 15 N -0.906 5.906 16 Si 0.967 3.033 17 H -0.270 1.270 18 H -0.273 1.273 19 H -0.275 1.275 20 O -0.234 6.234 21 H 0.053 0.947 22 H 0.053 0.947 23 H 0.100 0.900 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.111 0.889 27 H 0.123 0.877 28 H 0.087 0.913 29 H 0.032 0.968 30 H 0.036 0.964 31 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.193 -15.272 1.718 16.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.025 4.025 3 O -0.335 6.335 4 C 0.096 3.904 5 C -0.078 4.078 6 N -0.145 5.145 7 N -0.172 5.172 8 C 0.004 3.996 9 C 0.109 3.891 10 H 0.064 0.936 11 C -0.177 4.177 12 C -0.574 4.574 13 H 0.067 0.933 14 C -0.172 4.172 15 N -0.543 5.543 16 Si 0.791 3.209 17 H -0.195 1.195 18 H -0.198 1.198 19 H -0.200 1.200 20 O -0.113 6.113 21 H 0.072 0.928 22 H 0.072 0.928 23 H 0.119 0.881 24 H 0.091 0.909 25 H 0.091 0.909 26 H 0.129 0.871 27 H 0.140 0.860 28 H 0.106 0.894 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.239 -14.618 2.830 16.143 hybrid contribution 0.815 0.059 -1.032 1.316 sum -5.424 -14.558 1.799 15.639 Atomic orbital electron populations 1.21805 0.93064 1.03743 1.02403 1.22846 0.96218 0.81041 1.02421 1.87937 1.19297 1.30287 1.95938 1.20723 0.83192 0.80428 1.06098 1.28278 1.01427 0.98553 0.79586 1.74195 1.15304 0.97866 1.27177 1.74351 1.20015 1.12381 1.10480 1.29350 0.92741 0.85679 0.91837 1.17649 0.96688 0.82503 0.92308 0.93567 1.21643 0.95015 1.00139 1.00943 1.20976 0.97444 1.14468 1.24468 0.93261 1.25605 1.01932 0.95533 0.94124 1.69930 1.38157 1.20420 1.25829 0.85414 0.79094 0.77813 0.78538 1.19532 1.19801 1.20035 1.84808 1.66215 1.21479 1.38843 0.92751 0.92784 0.88138 0.90920 0.90850 0.87114 0.85956 0.89403 0.94876 0.94482 0.91891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 10.28 71.98 0.74 -1.49 16 2 C 0.05 0.78 6.66 71.98 0.48 1.26 16 3 O -0.41 -10.73 10.33 -148.98 -1.54 -12.27 16 4 C 0.17 4.20 6.56 71.24 0.47 4.67 16 5 C 0.13 5.09 8.11 88.34 0.72 5.81 16 6 N -0.30 -13.21 12.22 -165.50 -2.02 -15.23 16 7 N -0.33 -16.43 12.22 -165.51 -2.02 -18.45 16 8 C 0.21 10.56 6.92 88.34 0.61 11.17 16 9 C 0.13 6.69 2.77 -12.29 -0.03 6.66 16 10 H 0.05 2.47 8.14 -2.39 -0.02 2.45 16 11 C -0.12 -5.86 8.95 71.98 0.64 -5.21 16 12 C -0.54 -29.78 8.55 25.60 0.22 -29.56 16 13 H 0.05 2.83 7.74 -2.91 -0.02 2.80 16 14 C 0.03 1.56 5.30 84.66 0.45 2.00 16 15 N -0.91 -49.29 11.32 21.45 0.24 -49.04 16 16 Si 0.97 42.72 29.54 68.60 2.03 44.75 16 17 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 18 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 19 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 20 O -0.23 -10.24 10.87 -3.53 -0.04 -10.28 16 21 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 22 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 23 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 24 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 28 H 0.09 4.54 6.07 -2.39 -0.01 4.52 16 29 H 0.03 1.45 8.14 -2.38 -0.02 1.43 16 30 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.27 13.86 8.31 -92.71 -0.77 13.09 16 Total: -1.00 -65.88 275.47 2.06 -63.82 By element: Atomic # 1 Polarization: 0.27 SS G_CDS: 1.12 Total: 1.39 kcal Atomic # 6 Polarization: -8.97 SS G_CDS: 4.29 Total: -4.68 kcal Atomic # 7 Polarization: -78.92 SS G_CDS: -3.80 Total: -82.72 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: -1.58 Total: -22.55 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -65.88 2.06 -63.82 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349988876.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.830 kcal (2) G-P(sol) polarization free energy of solvation -65.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds